Wall clock time and date at job start Tue Mar 31 2020 04:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99647 * 2 1 4 4 H 1.09007 * 109.52396 * 30.13169 * 3 2 1 5 5 C 1.53114 * 109.52530 * 269.99812 * 3 2 1 6 6 C 1.53035 * 109.27940 * 182.44045 * 5 3 2 7 7 N 1.46854 * 109.52417 * 59.18355 * 6 5 3 8 8 C 1.46898 * 111.00240 * 174.15857 * 7 6 5 9 9 C 1.50698 * 109.46896 * 58.86216 * 8 7 6 10 10 O 1.21282 * 120.00030 * 5.58129 * 9 8 7 11 11 N 1.34780 * 119.99965 * 185.57535 * 9 8 7 12 12 C 1.46497 * 119.99955 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47146 * 179.97438 * 12 11 9 14 14 H 1.08004 * 119.99671 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00236 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99906 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99782 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47560 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47174 * 119.99958 * 17 15 13 20 20 H 1.48499 * 109.47057 * 239.99704 * 17 15 13 21 21 C 1.46843 * 111.19237 * 298.25772 * 7 6 5 22 22 H 1.08998 * 109.46897 * 301.73351 * 21 7 6 23 23 C 1.50708 * 109.45964 * 181.75502 * 21 7 6 24 24 O 1.20825 * 120.00082 * 332.01624 * 23 21 7 25 25 O 1.34233 * 119.99922 * 152.29034 * 23 21 7 26 26 C 1.53038 * 109.52767 * 61.74116 * 21 7 6 27 27 H 1.08996 * 109.47591 * 59.99963 * 1 2 3 28 28 H 1.09003 * 109.47300 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47642 * 299.99738 * 1 2 3 30 30 H 1.09005 * 109.49974 * 62.50327 * 5 3 2 31 31 H 1.08996 * 109.50565 * 302.38534 * 5 3 2 32 32 H 1.08992 * 109.46531 * 299.16853 * 6 5 3 33 33 H 1.09002 * 109.45262 * 179.18835 * 6 5 3 34 34 H 1.09002 * 109.46690 * 178.86182 * 8 7 6 35 35 H 1.08998 * 109.47111 * 298.86593 * 8 7 6 36 36 H 0.96995 * 119.99905 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47152 * 300.00193 * 12 11 9 38 38 H 1.09002 * 109.47155 * 60.00179 * 12 11 9 39 39 H 0.96996 * 120.00246 * 180.02562 * 16 15 13 40 40 H 0.96698 * 117.00036 * 180.02562 * 25 23 21 41 41 H 1.09003 * 109.50531 * 60.76178 * 26 21 7 42 42 H 1.09005 * 109.50688 * 180.87682 * 26 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3465 1.9997 0.5157 5 6 2.2183 1.7730 -1.4431 6 6 2.8963 3.1449 -1.4370 7 7 4.1871 3.0513 -0.7429 8 6 4.9288 4.3158 -0.8378 9 6 4.1085 5.4259 -0.2329 10 8 3.0600 5.1722 0.3215 11 7 4.5400 6.7005 -0.3079 12 6 3.7429 7.7795 0.2805 13 6 4.4415 9.0969 0.0621 14 1 5.3848 9.1272 -0.4631 15 6 3.8766 10.2633 0.5325 16 7 2.7277 10.2263 1.1715 17 14 4.7423 11.8961 0.2610 18 1 6.0091 11.6677 -0.4795 19 1 3.8634 12.7973 -0.5268 20 1 5.0428 12.5213 1.5740 21 6 4.0085 2.6498 0.6582 22 1 3.3652 3.3701 1.1634 23 6 5.3502 2.6078 1.3434 24 8 6.3488 2.3788 0.7029 25 8 5.4352 2.8194 2.6662 26 6 3.3636 1.2631 0.7147 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5138 0.8900 30 1 1.2532 1.8463 -1.9446 31 1 2.8495 1.0575 -1.9700 32 1 2.2584 3.8631 -0.9220 33 1 3.0590 3.4741 -2.4633 34 1 5.8716 4.2252 -0.2983 35 1 5.1295 4.5416 -1.8850 36 1 5.3784 6.9033 -0.7516 37 1 2.7612 7.8056 -0.1925 38 1 3.6263 7.6035 1.3499 39 1 2.3300 11.0469 1.5021 40 1 6.3172 2.7829 3.0609 41 1 4.0129 0.5394 0.2218 42 1 3.2170 0.9719 1.7549 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599125060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:14 Heat of formation + Delta-G solvation = -192.191042 kcal Electronic energy + Delta-G solvation = -25619.408363 eV Core-core repulsion = 21791.580359 eV Total energy + Delta-G solvation = -3827.828004 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.19127 -40.68985 -39.72950 -37.95040 -37.07126 -36.11300 -34.42482 -33.72320 -32.46429 -30.02755 -28.35223 -27.06188 -25.93518 -24.77834 -23.93768 -22.42853 -21.54904 -21.00211 -19.31069 -19.01774 -18.19481 -17.63009 -17.34522 -17.28712 -16.77104 -16.58132 -16.30226 -16.03833 -15.94634 -15.81433 -15.61371 -14.85421 -14.36883 -14.27040 -14.09922 -13.95086 -13.72746 -13.52075 -12.95509 -12.91781 -12.89307 -12.79213 -12.52185 -12.47939 -12.25602 -12.04190 -11.89466 -11.73289 -11.50772 -11.44479 -11.39939 -10.83015 -10.50592 -9.85476 -9.33581 -8.31532 -6.47861 1.01308 1.42136 1.42351 1.55981 1.60881 1.81572 2.29081 2.52084 2.70291 2.76421 3.03570 3.66266 3.71690 3.84666 3.94046 4.05060 4.19099 4.26210 4.32255 4.37609 4.48346 4.52530 4.54406 4.55379 4.77599 4.84683 4.86619 4.92240 4.99902 5.07610 5.21759 5.23414 5.45794 5.45996 5.62178 5.67311 5.76224 5.82843 6.20818 6.62765 6.81125 6.92443 7.20530 7.39091 8.80349 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.019395 B = 0.003594 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.304289 B = 7789.397862 C = 8466.188138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.094 3.906 4 H 0.059 0.941 5 C -0.127 4.127 6 C 0.042 3.958 7 N -0.490 5.490 8 C 0.032 3.968 9 C 0.464 3.536 10 O -0.585 6.585 11 N -0.704 5.704 12 C 0.268 3.732 13 C -0.557 4.557 14 H 0.082 0.918 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.982 3.018 18 H -0.254 1.254 19 H -0.278 1.278 20 H -0.279 1.279 21 C 0.079 3.921 22 H 0.087 0.913 23 C 0.489 3.511 24 O -0.517 6.517 25 O -0.513 6.513 26 C -0.093 4.093 27 H 0.049 0.951 28 H 0.103 0.897 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.139 0.861 36 H 0.408 0.592 37 H -0.010 1.010 38 H -0.013 1.013 39 H 0.269 0.731 40 H 0.430 0.570 41 H 0.085 0.915 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 -18.171 -3.368 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C 0.036 3.964 4 H 0.077 0.923 5 C -0.165 4.165 6 C -0.085 4.085 7 N -0.214 5.214 8 C -0.099 4.099 9 C 0.250 3.750 10 O -0.468 6.468 11 N -0.354 5.354 12 C 0.145 3.855 13 C -0.594 4.594 14 H 0.100 0.900 15 C -0.194 4.194 16 N -0.568 5.568 17 Si 0.805 3.195 18 H -0.178 1.178 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.030 4.030 22 H 0.105 0.895 23 C 0.331 3.669 24 O -0.406 6.406 25 O -0.327 6.327 26 C -0.131 4.131 27 H 0.068 0.932 28 H 0.121 0.879 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.157 0.843 36 H 0.243 0.757 37 H 0.008 0.992 38 H 0.005 0.995 39 H 0.077 0.923 40 H 0.292 0.708 41 H 0.104 0.896 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.162 -18.829 -3.461 19.180 hybrid contribution 0.292 2.056 0.731 2.202 sum 1.454 -16.773 -2.730 17.056 Atomic orbital electron populations 1.22992 0.79593 1.03965 1.00691 1.87855 1.21271 1.27257 1.95196 1.22025 0.93763 0.84694 0.95957 0.92278 1.22018 1.01514 0.96087 0.96891 1.22376 0.88773 0.97917 0.99457 1.62339 1.20817 1.27185 1.11082 1.22558 0.97143 0.85038 1.05151 1.22623 0.86908 0.85297 0.80136 1.90549 1.26044 1.83599 1.46569 1.46369 1.25544 1.06678 1.56782 1.18530 0.90522 0.84930 0.91536 1.21650 1.08049 0.91481 1.38256 0.90027 1.26018 0.95516 1.03840 0.94046 1.70125 1.18978 1.29704 1.37960 0.85150 0.78752 0.77510 0.78062 1.17784 1.20401 1.20506 1.21349 0.91210 1.00354 0.90114 0.89527 1.23190 0.91501 0.71592 0.80617 1.90683 1.38788 1.44841 1.66275 1.84533 1.41758 1.82937 1.23454 1.21465 0.95925 0.93292 1.02448 0.93234 0.87886 0.93715 0.89681 0.89839 0.93212 0.88572 0.87071 0.84345 0.75700 0.99159 0.99477 0.92252 0.70819 0.89635 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.60 16 2 O -0.40 -8.75 10.35 -148.98 -1.54 -10.29 16 3 C 0.09 2.16 2.68 30.67 0.08 2.24 16 4 H 0.06 1.45 7.79 -2.38 -0.02 1.44 16 5 C -0.13 -2.76 5.71 30.64 0.18 -2.58 16 6 C 0.04 1.08 4.99 86.32 0.43 1.51 16 7 N -0.49 -13.48 4.45 -880.05 -3.92 -17.40 16 8 C 0.03 0.91 5.46 85.56 0.47 1.38 16 9 C 0.46 17.43 7.23 87.66 0.63 18.07 16 10 O -0.59 -25.82 11.65 -3.04 -0.04 -25.85 16 11 N -0.70 -28.68 5.55 -466.78 -2.59 -31.27 16 12 C 0.27 14.27 5.43 85.63 0.46 14.74 16 13 C -0.56 -29.75 9.28 25.60 0.24 -29.51 16 14 H 0.08 3.97 7.60 -2.91 -0.02 3.95 16 15 C 0.01 0.31 5.46 84.66 0.46 0.77 16 16 N -0.93 -55.09 13.29 21.45 0.28 -54.81 16 17 Si 0.98 41.81 29.54 68.60 2.03 43.83 16 18 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 21 C 0.08 2.25 1.96 44.19 0.09 2.34 16 22 H 0.09 2.97 5.75 -2.39 -0.01 2.95 16 23 C 0.49 13.57 6.40 71.24 0.46 14.03 16 24 O -0.52 -15.75 15.90 21.97 0.35 -15.40 16 25 O -0.51 -12.02 13.42 -51.44 -0.69 -12.71 16 26 C -0.09 -2.24 5.01 30.65 0.15 -2.09 16 27 H 0.05 0.72 7.94 -2.39 -0.02 0.70 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 0.69 8.09 -2.38 -0.02 0.67 16 30 H 0.08 1.60 7.94 -2.38 -0.02 1.58 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.62 5.62 -2.39 -0.01 1.60 16 33 H 0.10 2.18 8.12 -2.39 -0.02 2.16 16 34 H 0.11 3.13 5.80 -2.39 -0.01 3.12 16 35 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.41 13.91 8.32 -92.71 -0.77 13.14 16 37 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 38 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.43 5.80 9.10 -74.06 -0.67 5.12 16 41 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -71.89 343.26 -1.63 -73.52 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -0.39 Total: 27.89 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: 4.88 Total: 22.49 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -6.23 Total: -103.48 kcal Atomic # 8 Polarization: -62.34 SS G_CDS: -1.92 Total: -64.26 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -71.89 -1.63 -73.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599125060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.667 kcal (2) G-P(sol) polarization free energy of solvation -71.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds