Wall clock time and date at job start Tue Mar 31 2020 03:33:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31410 * 1
3 3 Si 1.86802 * 120.00121 * 2 1
4 4 H 1.48498 * 109.47296 * 180.02562 * 3 2 1
5 5 H 1.48502 * 109.47417 * 300.00364 * 3 2 1
6 6 H 1.48500 * 109.47020 * 60.00286 * 3 2 1
7 7 C 1.38951 * 120.00150 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00193 * 157.64457 * 7 2 1
9 9 N 1.37098 * 119.99783 * 337.64887 * 7 2 1
10 10 C 1.46501 * 120.00016 * 326.20196 * 9 7 2
11 11 C 1.53002 * 109.46549 * 264.25704 * 10 9 7
12 12 C 1.50702 * 109.46968 * 179.97438 * 11 10 9
13 13 O 1.20826 * 119.99977 * 359.97438 * 12 11 10
14 14 O 1.34227 * 120.00215 * 179.97438 * 12 11 10
15 15 C 1.34775 * 119.99974 * 145.92176 * 9 7 2
16 16 O 1.21293 * 119.99963 * 180.02562 * 15 9 7
17 17 C 1.50698 * 120.00389 * 359.97438 * 15 9 7
18 18 C 1.53001 * 109.47452 * 179.97438 * 17 15 9
19 19 N 1.46901 * 109.46860 * 180.02562 * 18 17 15
20 20 C 1.47012 * 111.00303 * 293.63576 * 19 18 17
21 21 C 1.53096 * 109.25559 * 177.60884 * 20 19 18
22 22 O 1.43016 * 109.26016 * 56.85039 * 21 20 19
23 23 C 1.43019 * 113.73740 * 301.33149 * 22 21 20
24 24 C 1.47012 * 110.99659 * 170.00055 * 19 18 17
25 25 H 0.97003 * 119.99709 * 0.02562 * 1 2 3
26 26 H 1.09002 * 109.47047 * 24.24837 * 10 9 7
27 27 H 1.08993 * 109.47528 * 144.25530 * 10 9 7
28 28 H 1.08994 * 109.47209 * 299.99755 * 11 10 9
29 29 H 1.08997 * 109.47626 * 60.00128 * 11 10 9
30 30 H 0.96704 * 117.00151 * 179.97438 * 14 12 11
31 31 H 1.09000 * 109.47439 * 300.00585 * 17 15 9
32 32 H 1.09005 * 109.46643 * 60.00019 * 17 15 9
33 33 H 1.09001 * 109.46840 * 300.00440 * 18 17 15
34 34 H 1.08994 * 109.46533 * 60.00450 * 18 17 15
35 35 H 1.08996 * 109.50616 * 297.54241 * 20 19 18
36 36 H 1.08998 * 109.50074 * 57.67534 * 20 19 18
37 37 H 1.09002 * 109.51095 * 296.91431 * 21 20 19
38 38 H 1.09005 * 109.53825 * 176.80657 * 21 20 19
39 39 H 1.08996 * 109.50143 * 298.72958 * 23 22 21
40 40 H 1.08999 * 109.53787 * 178.62488 * 23 22 21
41 41 H 1.09007 * 109.50850 * 302.33365 * 24 19 18
42 42 H 1.08999 * 109.50737 * 62.41191 * 24 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 3.7081 1.3464 -0.0006
5 1 1.8894 2.3966 -1.2124
6 1 1.8895 2.3964 1.2125
7 6 2.0089 -1.2033 -0.0005
8 1 3.0280 -1.2383 -0.3563
9 7 1.4006 -2.3462 0.4505
10 6 0.4293 -2.2761 1.5449
11 6 1.1309 -2.5824 2.8697
12 6 0.1319 -2.5097 3.9957
13 8 -1.0226 -2.2400 3.7626
14 8 0.5246 -2.7445 5.2575
15 6 1.6921 -3.5335 -0.1168
16 8 1.1536 -4.5446 0.2819
17 6 2.6861 -3.6049 -1.2472
18 6 2.8338 -5.0571 -1.7057
19 7 3.8032 -5.1266 -2.8073
20 6 3.2927 -4.4395 -4.0025
21 6 4.3558 -4.4844 -5.1033
22 8 4.7032 -5.8461 -5.3684
23 6 5.2046 -6.5453 -4.2260
24 6 4.1502 -6.5213 -3.1164
25 1 -0.4850 0.8401 -0.0004
26 1 -0.0014 -1.2756 1.5849
27 1 -0.3622 -3.0060 1.3757
28 1 1.5617 -3.5828 2.8298
29 1 1.9224 -1.8525 3.0390
30 1 -0.1520 -2.6859 5.9460
31 1 2.3346 -2.9947 -2.0793
32 1 3.6518 -3.2320 -0.9059
33 1 3.1855 -5.6668 -0.8735
34 1 1.8682 -5.4302 -2.0469
35 1 2.3877 -4.9378 -4.3501
36 1 3.0664 -3.4020 -3.7570
37 1 5.2416 -3.9398 -4.7763
38 1 3.9611 -4.0262 -6.0102
39 1 6.1151 -6.0607 -3.8735
40 1 5.4237 -7.5779 -4.4978
41 1 4.5497 -7.0033 -2.2241
42 1 3.2587 -7.0530 -3.4489
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001601069785.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:33:56
Heat of formation + Delta-G solvation = -165.896711 kcal
Electronic energy + Delta-G solvation = -25042.986779 eV
Core-core repulsion = 21216.298983 eV
Total energy + Delta-G solvation = -3826.687796 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.156 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-39.85421 -39.54112 -38.57196 -36.00342 -35.71966 -34.91774 -32.03691 -31.44265
-31.02385 -30.07694 -26.77576 -25.24427 -24.07962 -23.97360 -21.95742 -20.48972
-20.14371 -19.09717 -17.78482 -17.02165 -16.50254 -16.13747 -15.95308 -15.83432
-15.39832 -15.22782 -15.03005 -14.73390 -14.51622 -14.09239 -13.97546 -13.56207
-13.01272 -12.68309 -12.60175 -12.31278 -12.11723 -11.77128 -11.66038 -11.37598
-11.34231 -11.17677 -11.14803 -10.99954 -10.71015 -10.60624 -10.43243 -10.27027
-10.14338 -10.06217 -9.65596 -9.21661 -8.54416 -8.24714 -7.68751 -6.47008
-4.15437 2.65783 3.04793 3.17467 3.20460 3.39732 3.74604 3.82758
3.93390 4.06725 4.78438 4.88929 4.93043 5.05038 5.09329 5.16780
5.30359 5.53786 5.58254 5.58667 5.66847 5.72260 5.78315 5.80078
5.89302 5.95135 6.00966 6.10814 6.31392 6.38161 6.51135 6.55935
6.80556 6.86035 7.05280 7.15527 7.16948 7.27062 7.41265 7.78508
8.25605 8.30274 8.97733 9.39304 9.82498 10.54481
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.014328 B = 0.004053 C = 0.003333
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1953.712191 B = 6907.058759 C = 8398.510488
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.851 5.851
2 C 0.044 3.956
3 Si 0.912 3.088
4 H -0.266 1.266
5 H -0.280 1.280
6 H -0.279 1.279
7 C -0.347 4.347
8 H 0.095 0.905
9 N -0.437 5.437
10 C 0.126 3.874
11 C -0.125 4.125
12 C 0.483 3.517
13 O -0.514 6.514
14 O -0.525 6.525
15 C 0.470 3.530
16 O -0.608 6.608
17 C -0.113 4.113
18 C 0.074 3.926
19 N -0.539 5.539
20 C 0.012 3.988
21 C 0.064 3.936
22 O -0.390 6.390
23 C 0.065 3.935
24 C 0.018 3.982
25 H 0.271 0.729
26 H 0.118 0.882
27 H 0.063 0.937
28 H 0.098 0.902
29 H 0.103 0.897
30 H 0.401 0.599
31 H 0.086 0.914
32 H 0.087 0.913
33 H 0.078 0.922
34 H 0.039 0.961
35 H 0.041 0.959
36 H 0.094 0.906
37 H 0.059 0.941
38 H 0.096 0.904
39 H 0.058 0.942
40 H 0.094 0.906
41 H 0.085 0.915
42 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.951 -5.527 -2.026 9.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.487 5.487
2 C -0.163 4.163
3 Si 0.738 3.262
4 H -0.190 1.190
5 H -0.206 1.206
6 H -0.205 1.205
7 C -0.474 4.474
8 H 0.113 0.887
9 N -0.155 5.155
10 C 0.002 3.998
11 C -0.164 4.164
12 C 0.325 3.675
13 O -0.402 6.402
14 O -0.336 6.336
15 C 0.259 3.741
16 O -0.495 6.495
17 C -0.153 4.153
18 C -0.053 4.053
19 N -0.264 5.264
20 C -0.116 4.116
21 C -0.013 4.013
22 O -0.309 6.309
23 C -0.012 4.012
24 C -0.111 4.111
25 H 0.082 0.918
26 H 0.135 0.865
27 H 0.081 0.919
28 H 0.116 0.884
29 H 0.121 0.879
30 H 0.259 0.741
31 H 0.104 0.896
32 H 0.105 0.895
33 H 0.096 0.904
34 H 0.057 0.943
35 H 0.060 0.940
36 H 0.112 0.888
37 H 0.078 0.922
38 H 0.114 0.886
39 H 0.077 0.923
40 H 0.112 0.888
41 H 0.103 0.897
42 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 7.906 -5.653 -2.247 9.975
hybrid contribution -0.854 0.780 0.598 1.302
sum 7.051 -4.873 -1.648 8.728
Atomic orbital electron populations
1.69950 1.06299 1.28015 1.44409 1.25377 0.95038 1.00025 0.95901
0.86123 0.80154 0.81842 0.78115 1.18989 1.20632 1.20462 1.19503
0.97450 0.85235 1.45247 0.88721 1.43444 1.38146 1.05844 1.28090
1.21189 0.90778 1.05677 0.82156 1.21866 0.97732 1.05043 0.91766
1.23792 0.89107 0.71721 0.82873 1.90704 1.20862 1.44280 1.84316
1.84592 1.46853 1.83712 1.18481 1.20430 0.85289 0.83949 0.84415
1.90534 1.56761 1.35509 1.66659 1.21287 0.99797 0.95932 0.98291
1.21856 0.93249 0.97585 0.92657 1.62222 1.43529 1.13795 1.06849
1.22859 0.96762 1.01161 0.90811 1.22685 0.97463 0.83057 0.98048
1.87949 1.84428 1.24477 1.34029 1.22643 0.95695 0.97147 0.85725
1.22747 0.98824 0.90100 0.99394 0.91812 0.86453 0.91903 0.88354
0.87864 0.74142 0.89585 0.89503 0.90401 0.94267 0.94045 0.88761
0.92232 0.88609 0.92342 0.88792 0.89704 0.94119
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -22.01 11.34 55.50 0.63 -21.38 16
2 C 0.04 1.05 4.92 -17.47 -0.09 0.96 16
3 Si 0.91 18.58 29.61 -169.99 -5.03 13.54 16
4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16
5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16
6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16
7 C -0.35 -8.25 8.70 -14.93 -0.13 -8.38 16
8 H 0.10 2.13 6.98 -52.49 -0.37 1.76 16
9 N -0.44 -10.45 2.56 -114.81 -0.29 -10.75 16
10 C 0.13 2.98 4.18 -4.04 -0.02 2.97 16
11 C -0.13 -2.45 6.10 -27.88 -0.17 -2.62 16
12 C 0.48 8.88 8.33 36.01 0.30 9.18 16
13 O -0.51 -11.01 16.74 -18.75 -0.31 -11.33 16
14 O -0.52 -7.49 13.42 -39.25 -0.53 -8.02 16
15 C 0.47 10.82 7.60 -10.99 -0.08 10.74 16
16 O -0.61 -15.26 15.66 5.55 0.09 -15.17 16
17 C -0.11 -2.13 4.29 -27.88 -0.12 -2.25 16
18 C 0.07 1.25 4.25 -3.82 -0.02 1.24 16
19 N -0.54 -7.80 4.73 -234.32 -1.11 -8.90 16
20 C 0.01 0.17 5.44 -3.71 -0.02 0.15 16
21 C 0.06 0.76 7.01 37.21 0.26 1.02 16
22 O -0.39 -5.06 10.83 -35.23 -0.38 -5.44 16
23 C 0.06 0.71 7.01 37.20 0.26 0.97 16
24 C 0.02 0.22 5.64 -3.72 -0.02 0.20 16
25 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16
26 H 0.12 3.02 5.31 -51.93 -0.28 2.74 16
27 H 0.06 1.61 7.55 -51.93 -0.39 1.21 16
28 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16
29 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16
30 H 0.40 3.77 9.10 45.56 0.41 4.19 16
31 H 0.09 1.63 6.47 -51.93 -0.34 1.29 16
32 H 0.09 1.57 7.64 -51.93 -0.40 1.18 16
33 H 0.08 1.34 8.00 -51.93 -0.42 0.92 16
34 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16
35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
36 H 0.09 1.30 6.38 -51.93 -0.33 0.96 16
37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
38 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16
39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
41 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16
42 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16
LS Contribution 346.70 15.07 5.22 5.22
Total: -1.00 -30.57 346.70 -7.01 -37.59
By element:
Atomic # 1 Polarization: 15.91 SS G_CDS: -5.46 Total: 10.45 kcal
Atomic # 6 Polarization: 14.02 SS G_CDS: 0.16 Total: 14.18 kcal
Atomic # 7 Polarization: -40.26 SS G_CDS: -0.77 Total: -41.04 kcal
Atomic # 8 Polarization: -38.82 SS G_CDS: -1.14 Total: -39.95 kcal
Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.54 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -30.57 -7.01 -37.59 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601069785.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -128.310 kcal
(2) G-P(sol) polarization free energy of solvation -30.574 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.884 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal
(6) G-S(sol) free energy of system = (1) + (5) -165.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds