Wall clock time and date at job start Tue Mar 31 2020 03:33:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31410 * 1
3 3 Si 1.86802 * 120.00121 * 2 1
4 4 H 1.48498 * 109.47296 * 180.02562 * 3 2 1
5 5 H 1.48502 * 109.47417 * 300.00364 * 3 2 1
6 6 H 1.48500 * 109.47020 * 60.00286 * 3 2 1
7 7 C 1.38951 * 120.00150 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00193 * 157.64457 * 7 2 1
9 9 N 1.37098 * 119.99783 * 337.64887 * 7 2 1
10 10 C 1.46501 * 120.00016 * 326.20196 * 9 7 2
11 11 C 1.53002 * 109.46549 * 264.25704 * 10 9 7
12 12 C 1.50702 * 109.46968 * 179.97438 * 11 10 9
13 13 O 1.20826 * 119.99977 * 359.97438 * 12 11 10
14 14 O 1.34227 * 120.00215 * 179.97438 * 12 11 10
15 15 C 1.34775 * 119.99974 * 145.92176 * 9 7 2
16 16 O 1.21293 * 119.99963 * 180.02562 * 15 9 7
17 17 C 1.50698 * 120.00389 * 359.97438 * 15 9 7
18 18 C 1.53001 * 109.47452 * 179.97438 * 17 15 9
19 19 N 1.46901 * 109.46860 * 180.02562 * 18 17 15
20 20 C 1.47012 * 111.00303 * 293.63576 * 19 18 17
21 21 C 1.53096 * 109.25559 * 177.60884 * 20 19 18
22 22 O 1.43016 * 109.26016 * 56.85039 * 21 20 19
23 23 C 1.43019 * 113.73740 * 301.33149 * 22 21 20
24 24 C 1.47012 * 110.99659 * 170.00055 * 19 18 17
25 25 H 0.97003 * 119.99709 * 0.02562 * 1 2 3
26 26 H 1.09002 * 109.47047 * 24.24837 * 10 9 7
27 27 H 1.08993 * 109.47528 * 144.25530 * 10 9 7
28 28 H 1.08994 * 109.47209 * 299.99755 * 11 10 9
29 29 H 1.08997 * 109.47626 * 60.00128 * 11 10 9
30 30 H 0.96704 * 117.00151 * 179.97438 * 14 12 11
31 31 H 1.09000 * 109.47439 * 300.00585 * 17 15 9
32 32 H 1.09005 * 109.46643 * 60.00019 * 17 15 9
33 33 H 1.09001 * 109.46840 * 300.00440 * 18 17 15
34 34 H 1.08994 * 109.46533 * 60.00450 * 18 17 15
35 35 H 1.08996 * 109.50616 * 297.54241 * 20 19 18
36 36 H 1.08998 * 109.50074 * 57.67534 * 20 19 18
37 37 H 1.09002 * 109.51095 * 296.91431 * 21 20 19
38 38 H 1.09005 * 109.53825 * 176.80657 * 21 20 19
39 39 H 1.08996 * 109.50143 * 298.72958 * 23 22 21
40 40 H 1.08999 * 109.53787 * 178.62488 * 23 22 21
41 41 H 1.09007 * 109.50850 * 302.33365 * 24 19 18
42 42 H 1.08999 * 109.50737 * 62.41191 * 24 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6177 0.0000
4 1 3.7081 1.3464 -0.0006
5 1 1.8894 2.3966 -1.2124
6 1 1.8895 2.3964 1.2125
7 6 2.0089 -1.2033 -0.0005
8 1 3.0280 -1.2383 -0.3563
9 7 1.4006 -2.3462 0.4505
10 6 0.4293 -2.2761 1.5449
11 6 1.1309 -2.5824 2.8697
12 6 0.1319 -2.5097 3.9957
13 8 -1.0226 -2.2400 3.7626
14 8 0.5246 -2.7445 5.2575
15 6 1.6921 -3.5335 -0.1168
16 8 1.1536 -4.5446 0.2819
17 6 2.6861 -3.6049 -1.2472
18 6 2.8338 -5.0571 -1.7057
19 7 3.8032 -5.1266 -2.8073
20 6 3.2927 -4.4395 -4.0025
21 6 4.3558 -4.4844 -5.1033
22 8 4.7032 -5.8461 -5.3684
23 6 5.2046 -6.5453 -4.2260
24 6 4.1502 -6.5213 -3.1164
25 1 -0.4850 0.8401 -0.0004
26 1 -0.0014 -1.2756 1.5849
27 1 -0.3622 -3.0060 1.3757
28 1 1.5617 -3.5828 2.8298
29 1 1.9224 -1.8525 3.0390
30 1 -0.1520 -2.6859 5.9460
31 1 2.3346 -2.9947 -2.0793
32 1 3.6518 -3.2320 -0.9059
33 1 3.1855 -5.6668 -0.8735
34 1 1.8682 -5.4302 -2.0469
35 1 2.3877 -4.9378 -4.3501
36 1 3.0664 -3.4020 -3.7570
37 1 5.2416 -3.9398 -4.7763
38 1 3.9611 -4.0262 -6.0102
39 1 6.1151 -6.0607 -3.8735
40 1 5.4237 -7.5779 -4.4978
41 1 4.5497 -7.0033 -2.2241
42 1 3.2587 -7.0530 -3.4489
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001601069785.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:33:55
Heat of formation + Delta-G solvation = -188.471290 kcal
Electronic energy + Delta-G solvation = -25043.965686 eV
Core-core repulsion = 21216.298983 eV
Total energy + Delta-G solvation = -3827.666703 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.156 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-41.36598 -40.74432 -40.15960 -37.37990 -37.03389 -36.62263 -33.83727 -32.96374
-32.14633 -31.54808 -28.00231 -27.08015 -25.66005 -24.97783 -23.32680 -21.92246
-21.30252 -20.91655 -19.26601 -18.60630 -18.01303 -17.58327 -17.23529 -17.09891
-16.91166 -16.53344 -16.23110 -16.08701 -15.96342 -15.62866 -15.34768 -14.92576
-14.48436 -14.25940 -14.05002 -13.88232 -13.38505 -13.25887 -13.05031 -12.94671
-12.80747 -12.58766 -12.57706 -12.34390 -12.24504 -12.04727 -11.90996 -11.76509
-11.67412 -11.43160 -11.05654 -10.64752 -10.40100 -9.57762 -9.43406 -8.31170
-6.05568 1.17380 1.42823 1.52123 1.64302 1.92555 2.05834 2.36866
2.63211 2.97279 3.06685 3.22488 3.90178 3.97171 4.01541 4.03220
4.11461 4.20383 4.22582 4.34162 4.39807 4.45217 4.54443 4.59206
4.70721 4.73994 4.79075 4.85997 4.91156 4.97641 5.03807 5.07867
5.09794 5.35711 5.51594 5.58681 5.91027 5.94211 5.99146 6.20023
6.39853 6.98815 7.11683 7.54990 7.98235 8.71542
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.014328 B = 0.004053 C = 0.003333
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1953.712191 B = 6907.058759 C = 8398.510488
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.001 3.999
3 Si 0.981 3.019
4 H -0.249 1.249
5 H -0.283 1.283
6 H -0.283 1.283
7 C -0.354 4.354
8 H 0.110 0.890
9 N -0.447 5.447
10 C 0.130 3.870
11 C -0.117 4.117
12 C 0.494 3.506
13 O -0.550 6.550
14 O -0.506 6.506
15 C 0.458 3.542
16 O -0.635 6.635
17 C -0.099 4.099
18 C 0.087 3.913
19 N -0.538 5.538
20 C 0.010 3.990
21 C 0.068 3.932
22 O -0.405 6.405
23 C 0.066 3.934
24 C 0.015 3.985
25 H 0.271 0.729
26 H 0.097 0.903
27 H 0.030 0.970
28 H 0.102 0.898
29 H 0.119 0.881
30 H 0.427 0.573
31 H 0.084 0.916
32 H 0.100 0.900
33 H 0.075 0.925
34 H 0.017 0.983
35 H 0.030 0.970
36 H 0.090 0.910
37 H 0.067 0.933
38 H 0.114 0.886
39 H 0.067 0.933
40 H 0.119 0.881
41 H 0.097 0.903
42 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.405 -5.259 -2.001 11.829
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.202 4.202
3 Si 0.804 3.196
4 H -0.172 1.172
5 H -0.209 1.209
6 H -0.208 1.208
7 C -0.481 4.481
8 H 0.128 0.872
9 N -0.165 5.165
10 C 0.006 3.994
11 C -0.155 4.155
12 C 0.338 3.662
13 O -0.441 6.441
14 O -0.320 6.320
15 C 0.248 3.752
16 O -0.524 6.524
17 C -0.139 4.139
18 C -0.041 4.041
19 N -0.263 5.263
20 C -0.118 4.118
21 C -0.009 4.009
22 O -0.324 6.324
23 C -0.011 4.011
24 C -0.113 4.113
25 H 0.081 0.919
26 H 0.114 0.886
27 H 0.048 0.952
28 H 0.120 0.880
29 H 0.137 0.863
30 H 0.288 0.712
31 H 0.103 0.897
32 H 0.118 0.882
33 H 0.093 0.907
34 H 0.036 0.964
35 H 0.048 0.952
36 H 0.108 0.892
37 H 0.086 0.914
38 H 0.132 0.868
39 H 0.085 0.915
40 H 0.136 0.864
41 H 0.116 0.884
42 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges 10.388 -5.399 -2.198 11.912
hybrid contribution -1.656 0.625 0.637 1.881
sum 8.732 -4.774 -1.561 10.074
Atomic orbital electron populations
1.70076 1.08084 1.28744 1.45974 1.26233 0.95520 1.03156 0.95271
0.85069 0.79625 0.77376 0.77521 1.17210 1.20861 1.20840 1.19884
0.97978 0.85183 1.45023 0.87212 1.43684 1.37986 1.06392 1.28447
1.20956 0.90687 1.03325 0.84453 1.21620 0.97846 1.05608 0.90450
1.23393 0.87971 0.70953 0.83885 1.90705 1.22168 1.46140 1.85115
1.84503 1.47494 1.82595 1.17414 1.21158 0.85703 0.83329 0.84963
1.90506 1.57934 1.36317 1.67601 1.21187 0.98940 0.97320 0.96474
1.21621 0.92914 0.96015 0.93529 1.62238 1.42150 1.15351 1.06593
1.22920 0.97185 1.00618 0.91110 1.22742 0.97082 0.82985 0.98047
1.87937 1.84515 1.24956 1.34963 1.22791 0.95090 0.98519 0.84651
1.22882 0.99088 0.88693 1.00681 0.91926 0.88552 0.95156 0.87964
0.86317 0.71157 0.89736 0.88175 0.90655 0.96447 0.95216 0.89167
0.91446 0.86840 0.91519 0.86359 0.88445 0.94995
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -47.07 11.34 21.66 0.25 -46.82 16
2 C 0.00 0.07 4.92 84.93 0.42 0.49 16
3 Si 0.98 37.43 29.61 68.60 2.03 39.46 16
4 H -0.25 -8.76 7.11 99.48 0.71 -8.06 16
5 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16
6 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16
7 C -0.35 -16.65 8.70 84.04 0.73 -15.92 16
8 H 0.11 4.75 6.98 -2.91 -0.02 4.73 16
9 N -0.45 -21.68 2.56 -635.54 -1.63 -23.30 16
10 C 0.13 6.35 4.18 86.38 0.36 6.71 16
11 C -0.12 -4.54 6.10 29.85 0.18 -4.36 16
12 C 0.49 17.88 8.33 71.24 0.59 18.48 16
13 O -0.55 -23.86 16.74 21.97 0.37 -23.49 16
14 O -0.51 -13.30 13.42 -51.39 -0.69 -13.99 16
15 C 0.46 21.39 7.60 87.66 0.67 22.06 16
16 O -0.63 -32.69 15.66 -3.07 -0.05 -32.74 16
17 C -0.10 -3.71 4.29 29.85 0.13 -3.58 16
18 C 0.09 2.94 4.25 86.30 0.37 3.31 16
19 N -0.54 -14.97 4.73 -895.25 -4.23 -19.21 16
20 C 0.01 0.26 5.44 86.31 0.47 0.73 16
21 C 0.07 1.47 7.01 72.01 0.50 1.98 16
22 O -0.40 -9.62 10.83 -148.98 -1.61 -11.23 16
23 C 0.07 1.29 7.01 72.01 0.50 1.79 16
24 C 0.01 0.34 5.64 86.31 0.49 0.83 16
25 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16
26 H 0.10 5.14 5.31 -2.39 -0.01 5.13 16
27 H 0.03 1.62 7.55 -2.39 -0.02 1.61 16
28 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16
29 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16
30 H 0.43 6.86 9.10 -74.05 -0.67 6.19 16
31 H 0.08 3.19 6.47 -2.39 -0.02 3.18 16
32 H 0.10 3.48 7.64 -2.38 -0.02 3.46 16
33 H 0.07 2.56 8.00 -2.39 -0.02 2.54 16
34 H 0.02 0.65 8.08 -2.39 -0.02 0.63 16
35 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16
36 H 0.09 2.42 6.38 -2.39 -0.02 2.40 16
37 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16
38 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16
39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
40 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16
41 H 0.10 2.00 8.09 -2.38 -0.02 1.98 16
42 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16
Total: -1.00 -66.77 346.70 0.21 -66.56
By element:
Atomic # 1 Polarization: 31.89 SS G_CDS: 0.36 Total: 32.25 kcal
Atomic # 6 Polarization: 27.10 SS G_CDS: 5.41 Total: 32.51 kcal
Atomic # 7 Polarization: -83.72 SS G_CDS: -5.61 Total: -89.33 kcal
Atomic # 8 Polarization: -79.47 SS G_CDS: -1.98 Total: -81.45 kcal
Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal
Total: -66.77 0.21 -66.56 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601069785.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -121.910 kcal
(2) G-P(sol) polarization free energy of solvation -66.772 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.682 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal
(6) G-S(sol) free energy of system = (1) + (5) -188.471 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds