Wall clock time and date at job start Tue Mar 31 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99724 * 2 1 4 4 H 1.48502 * 109.46813 * 270.00210 * 3 2 1 5 5 H 1.48496 * 109.46972 * 30.00238 * 3 2 1 6 6 H 1.48502 * 109.46883 * 150.00365 * 3 2 1 7 7 C 1.37873 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99691 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00086 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47144 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00246 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99705 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00152 * 179.97438 * 11 10 9 14 14 N 1.46902 * 109.46899 * 177.98084 * 13 11 10 15 15 C 1.46896 * 111.00270 * 287.28736 * 14 13 11 16 16 C 1.50704 * 109.46982 * 151.43062 * 15 14 13 17 17 O 1.20824 * 120.00051 * 353.51819 * 16 15 14 18 18 O 1.34228 * 119.99639 * 173.51503 * 16 15 14 19 19 C 1.46901 * 110.99902 * 163.33514 * 14 13 11 20 20 C 1.53178 * 109.54400 * 65.42646 * 19 14 13 21 21 C 1.53093 * 109.16327 * 176.84621 * 20 19 14 22 22 O 1.42904 * 109.41744 * 302.39628 * 21 20 19 23 23 C 1.42898 * 114.09674 * 61.15781 * 22 21 20 24 24 C 1.53094 * 109.41696 * 298.84119 * 23 22 21 25 25 H 0.97005 * 119.99923 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47130 * 59.99927 * 9 7 2 27 27 H 1.09000 * 109.47367 * 299.99747 * 9 7 2 28 28 H 0.96998 * 119.99905 * 0.02562 * 10 9 7 29 29 H 1.09002 * 109.46894 * 57.98476 * 13 11 10 30 30 H 1.08994 * 109.47314 * 297.98131 * 13 11 10 31 31 H 1.09002 * 109.47057 * 271.43298 * 15 14 13 32 32 H 1.09003 * 109.46837 * 31.43284 * 15 14 13 33 33 H 0.96709 * 116.99719 * 180.02562 * 18 16 15 34 34 H 1.09005 * 109.61821 * 305.21152 * 19 14 13 35 35 H 1.08997 * 109.52453 * 296.75954 * 20 19 14 36 36 H 1.09011 * 109.51805 * 56.94780 * 20 19 14 37 37 H 1.09001 * 109.47868 * 182.40965 * 21 20 19 38 38 H 1.08997 * 109.47885 * 62.38137 * 21 20 19 39 39 H 1.09003 * 109.48381 * 178.85918 * 23 22 21 40 40 H 1.09000 * 109.49194 * 58.82810 * 23 22 21 41 41 H 1.08998 * 109.52087 * 297.70464 * 24 23 22 42 42 H 1.09000 * 109.52493 * 177.51289 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7539 -4.8833 -0.0015 12 8 0.5615 -5.1049 -0.0006 13 6 2.7333 -6.0287 -0.0033 14 7 1.9995 -7.3003 0.0462 15 6 1.4207 -7.5227 1.3779 16 6 0.1764 -8.3634 1.2509 17 8 -0.2564 -8.6406 0.1574 18 8 -0.4510 -8.8042 2.3525 19 6 2.8630 -8.4220 -0.3464 20 6 3.9824 -8.5925 0.6852 21 6 4.8298 -9.8112 0.3104 22 8 3.9943 -10.9687 0.2446 23 6 2.9584 -10.8855 -0.7363 24 6 2.0358 -9.7100 -0.4036 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 3.1568 -3.4353 -0.0021 29 1 3.3848 -5.9510 0.8671 30 1 3.3344 -5.9913 -0.9117 31 1 2.1454 -8.0391 2.0074 32 1 1.1665 -6.5632 1.8284 33 1 -1.2450 -9.3404 2.2207 34 1 3.2974 -8.2239 -1.3264 35 1 4.6096 -7.7011 0.6928 36 1 3.5473 -8.7414 1.6735 37 1 5.6020 -9.9627 1.0646 38 1 5.2971 -9.6445 -0.6601 39 1 2.3825 -11.8109 -0.7362 40 1 3.4010 -10.7329 -1.7206 41 1 1.5614 -9.8814 0.5626 42 1 1.2709 -9.6177 -1.1747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:55 Heat of formation + Delta-G solvation = -157.923667 kcal Electronic energy + Delta-G solvation = -25394.493605 eV Core-core repulsion = 21568.151546 eV Total energy + Delta-G solvation = -3826.342059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86910 -39.42327 -38.80265 -36.88586 -35.78241 -34.16754 -32.37827 -32.14519 -31.35861 -29.45743 -27.55078 -26.02047 -23.87493 -23.59659 -22.34827 -21.64004 -19.84346 -19.52642 -18.01286 -17.37630 -16.95191 -16.54843 -16.28617 -15.97658 -15.51916 -15.43842 -15.24392 -14.81499 -14.71665 -14.33718 -14.08430 -13.75032 -13.38778 -13.13579 -12.60530 -12.51362 -12.38528 -12.25449 -11.95979 -11.68005 -11.55082 -11.48661 -11.19694 -11.00200 -10.98303 -10.88286 -10.53256 -10.33464 -10.31223 -9.82127 -9.41686 -9.11656 -8.75128 -8.35674 -7.89313 -6.18271 -4.25546 2.40948 2.84701 3.22657 3.28726 3.30917 3.33707 3.56481 3.67644 4.17796 4.34246 4.45283 4.50027 4.67111 4.78083 4.87252 4.99072 5.10226 5.16607 5.17799 5.21616 5.33043 5.35551 5.40399 5.42043 5.46553 5.53652 5.59669 5.71584 5.96104 6.06615 6.62290 6.68637 6.80976 6.92767 7.29893 7.41844 7.50377 7.64926 7.95369 8.08778 8.60461 8.76886 9.09306 9.41318 10.91843 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.003245 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.996564 B = 8625.281164 C = 9457.639710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.715 5.715 11 C 0.493 3.507 12 O -0.534 6.534 13 C 0.037 3.963 14 N -0.497 5.497 15 C 0.061 3.939 16 C 0.481 3.519 17 O -0.487 6.487 18 O -0.526 6.526 19 C 0.085 3.915 20 C -0.199 4.199 21 C 0.068 3.932 22 O -0.386 6.386 23 C 0.060 3.940 24 C -0.145 4.145 25 H 0.266 0.734 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.389 0.611 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.407 0.593 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.475 -20.291 2.439 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.364 5.364 11 C 0.276 3.724 12 O -0.411 6.411 13 C -0.094 4.094 14 N -0.220 5.220 15 C -0.068 4.068 16 C 0.321 3.679 17 O -0.372 6.372 18 O -0.338 6.338 19 C -0.023 4.023 20 C -0.239 4.239 21 C -0.010 4.010 22 O -0.304 6.304 23 C -0.017 4.017 24 C -0.183 4.183 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.222 0.778 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.265 0.735 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.273 -20.246 1.954 21.959 hybrid contribution 0.892 1.063 0.290 1.418 sum 9.165 -19.183 2.244 21.378 Atomic orbital electron populations 1.69979 1.06117 1.27321 1.48803 1.24958 0.94909 0.99464 0.94701 0.86417 0.79595 0.82666 0.78232 1.20454 1.21011 1.19756 1.21218 0.93233 0.90463 1.53304 0.91917 1.19083 0.88254 0.81860 0.97718 1.46453 1.11064 1.06035 1.72861 1.20305 0.89623 0.84081 0.78340 1.90707 1.16446 1.84539 1.49369 1.22063 0.95332 0.88655 1.03300 1.61183 1.33965 1.00980 1.25876 1.21581 0.92464 1.00911 0.91805 1.23134 0.85302 0.77709 0.81711 1.90698 1.64857 1.53684 1.27980 1.84512 1.43862 1.66708 1.38734 1.21913 0.91135 0.90675 0.98591 1.23029 0.99401 0.99954 1.01472 1.22471 0.92372 0.84876 1.01271 1.87927 1.44505 1.38972 1.59024 1.22669 0.88742 0.99044 0.91239 1.22471 0.98846 0.93132 1.03809 0.92427 0.95541 0.95622 0.77847 0.91706 0.87667 0.89980 0.86440 0.73450 0.89002 0.90208 0.90415 0.88869 0.92972 0.88740 0.92972 0.91857 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.98 13.29 55.43 0.74 -25.25 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -14.53 9.28 -34.45 -0.32 -14.85 16 8 H 0.06 1.56 7.60 -52.48 -0.40 1.16 16 9 C 0.25 6.57 5.43 -5.20 -0.03 6.54 16 10 N -0.71 -14.37 5.55 -61.47 -0.34 -14.71 16 11 C 0.49 9.39 7.26 -10.99 -0.08 9.31 16 12 O -0.53 -12.69 15.39 5.55 0.09 -12.60 16 13 C 0.04 0.48 4.68 -4.98 -0.02 0.46 16 14 N -0.50 -6.71 3.65 -229.29 -0.84 -7.55 16 15 C 0.06 0.81 4.60 -4.98 -0.02 0.78 16 16 C 0.48 6.85 6.28 36.01 0.23 7.08 16 17 O -0.49 -8.25 14.45 -18.75 -0.27 -8.52 16 18 O -0.53 -5.98 13.42 -39.25 -0.53 -6.50 16 19 C 0.09 0.90 2.29 -67.53 -0.15 0.74 16 20 C -0.20 -1.66 4.85 -26.59 -0.13 -1.79 16 21 C 0.07 0.53 6.84 37.21 0.25 0.79 16 22 O -0.39 -3.93 10.77 -35.23 -0.38 -4.31 16 23 C 0.06 0.55 6.84 37.21 0.25 0.80 16 24 C -0.14 -1.59 3.93 -26.59 -0.10 -1.69 16 25 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.39 6.54 8.32 -40.82 -0.34 6.20 16 29 H 0.06 0.66 7.32 -51.93 -0.38 0.28 16 30 H 0.11 1.15 7.87 -51.93 -0.41 0.74 16 31 H 0.08 0.86 5.35 -51.93 -0.28 0.58 16 32 H 0.12 1.74 6.68 -51.93 -0.35 1.39 16 33 H 0.41 2.90 9.10 45.56 0.41 3.32 16 34 H 0.09 0.91 7.97 -51.93 -0.41 0.49 16 35 H 0.08 0.56 7.11 -51.93 -0.37 0.20 16 36 H 0.08 0.69 5.83 -51.92 -0.30 0.38 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.76 5.39 -51.93 -0.28 0.48 16 42 H 0.10 1.25 7.16 -51.93 -0.37 0.88 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -35.45 337.97 -6.83 -42.28 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.15 Total: 6.65 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.22 Total: 9.82 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.44 Total: -47.51 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.09 Total: -31.93 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.45 -6.83 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.645 kcal (2) G-P(sol) polarization free energy of solvation -35.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds