Wall clock time and date at job start Tue Mar 31 2020 03:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99724 * 2 1 4 4 H 1.48502 * 109.46813 * 270.00210 * 3 2 1 5 5 H 1.48496 * 109.46972 * 30.00238 * 3 2 1 6 6 H 1.48502 * 109.46883 * 150.00365 * 3 2 1 7 7 C 1.37873 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99691 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00086 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47144 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00246 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99705 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00152 * 179.97438 * 11 10 9 14 14 N 1.46902 * 109.46899 * 177.98084 * 13 11 10 15 15 C 1.46896 * 111.00270 * 287.28736 * 14 13 11 16 16 C 1.50704 * 109.46982 * 151.43062 * 15 14 13 17 17 O 1.20824 * 120.00051 * 353.51819 * 16 15 14 18 18 O 1.34228 * 119.99639 * 173.51503 * 16 15 14 19 19 C 1.46901 * 110.99902 * 163.33514 * 14 13 11 20 20 C 1.53178 * 109.54400 * 65.42646 * 19 14 13 21 21 C 1.53093 * 109.16327 * 176.84621 * 20 19 14 22 22 O 1.42904 * 109.41744 * 302.39628 * 21 20 19 23 23 C 1.42898 * 114.09674 * 61.15781 * 22 21 20 24 24 C 1.53094 * 109.41696 * 298.84119 * 23 22 21 25 25 H 0.97005 * 119.99923 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47130 * 59.99927 * 9 7 2 27 27 H 1.09000 * 109.47367 * 299.99747 * 9 7 2 28 28 H 0.96998 * 119.99905 * 0.02562 * 10 9 7 29 29 H 1.09002 * 109.46894 * 57.98476 * 13 11 10 30 30 H 1.08994 * 109.47314 * 297.98131 * 13 11 10 31 31 H 1.09002 * 109.47057 * 271.43298 * 15 14 13 32 32 H 1.09003 * 109.46837 * 31.43284 * 15 14 13 33 33 H 0.96709 * 116.99719 * 180.02562 * 18 16 15 34 34 H 1.09005 * 109.61821 * 305.21152 * 19 14 13 35 35 H 1.08997 * 109.52453 * 296.75954 * 20 19 14 36 36 H 1.09011 * 109.51805 * 56.94780 * 20 19 14 37 37 H 1.09001 * 109.47868 * 182.40965 * 21 20 19 38 38 H 1.08997 * 109.47885 * 62.38137 * 21 20 19 39 39 H 1.09003 * 109.48381 * 178.85918 * 23 22 21 40 40 H 1.09000 * 109.49194 * 58.82810 * 23 22 21 41 41 H 1.08998 * 109.52087 * 297.70464 * 24 23 22 42 42 H 1.09000 * 109.52493 * 177.51289 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7539 -4.8833 -0.0015 12 8 0.5615 -5.1049 -0.0006 13 6 2.7333 -6.0287 -0.0033 14 7 1.9995 -7.3003 0.0462 15 6 1.4207 -7.5227 1.3779 16 6 0.1764 -8.3634 1.2509 17 8 -0.2564 -8.6406 0.1574 18 8 -0.4510 -8.8042 2.3525 19 6 2.8630 -8.4220 -0.3464 20 6 3.9824 -8.5925 0.6852 21 6 4.8298 -9.8112 0.3104 22 8 3.9943 -10.9687 0.2446 23 6 2.9584 -10.8855 -0.7363 24 6 2.0358 -9.7100 -0.4036 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5566 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 3.1568 -3.4353 -0.0021 29 1 3.3848 -5.9510 0.8671 30 1 3.3344 -5.9913 -0.9117 31 1 2.1454 -8.0391 2.0074 32 1 1.1665 -6.5632 1.8284 33 1 -1.2450 -9.3404 2.2207 34 1 3.2974 -8.2239 -1.3264 35 1 4.6096 -7.7011 0.6928 36 1 3.5473 -8.7414 1.6735 37 1 5.6020 -9.9627 1.0646 38 1 5.2971 -9.6445 -0.6601 39 1 2.3825 -11.8109 -0.7362 40 1 3.4010 -10.7329 -1.7206 41 1 1.5614 -9.8814 0.5626 42 1 1.2709 -9.6177 -1.1747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:54 Heat of formation + Delta-G solvation = -187.964642 kcal Electronic energy + Delta-G solvation = -25395.796279 eV Core-core repulsion = 21568.151546 eV Total energy + Delta-G solvation = -3827.644733 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.86249 -40.51461 -40.08063 -37.88805 -36.86652 -36.05720 -34.32569 -33.05979 -32.02880 -30.71001 -29.21007 -27.25234 -24.90867 -24.51122 -23.91819 -22.64863 -21.31285 -20.52306 -19.15021 -18.85262 -18.13795 -17.67056 -17.29877 -16.96825 -16.92433 -16.75248 -16.40021 -16.18198 -15.73534 -15.63499 -15.13435 -14.93401 -14.49547 -14.28561 -14.06731 -13.97631 -13.72470 -13.32022 -13.17922 -12.95650 -12.89671 -12.67588 -12.53589 -12.27647 -12.21317 -12.06913 -11.86460 -11.47322 -11.41521 -11.21834 -10.79071 -10.71282 -10.53991 -9.78374 -9.30973 -8.28075 -6.44744 1.30620 1.44014 1.46395 1.57507 1.82840 1.88501 2.31392 2.49631 2.97103 3.06522 3.07084 3.65184 3.73345 3.91974 3.98776 4.03718 4.11517 4.18499 4.26000 4.34208 4.42653 4.48626 4.51820 4.63813 4.73359 4.83140 4.87091 5.04706 5.13378 5.20076 5.23402 5.26201 5.50915 5.65686 5.70790 5.78338 5.86881 5.95231 6.28082 6.67361 6.98501 7.09235 7.25391 7.57692 8.84094 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.003245 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.996564 B = 8625.281164 C = 9457.639710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.252 1.252 7 C -0.553 4.553 8 H 0.087 0.913 9 C 0.269 3.731 10 N -0.708 5.708 11 C 0.489 3.511 12 O -0.588 6.588 13 C 0.053 3.947 14 N -0.525 5.525 15 C 0.062 3.938 16 C 0.479 3.521 17 O -0.522 6.522 18 O -0.520 6.520 19 C 0.086 3.914 20 C -0.191 4.191 21 C 0.063 3.937 22 O -0.403 6.403 23 C 0.065 3.935 24 C -0.139 4.139 25 H 0.268 0.732 26 H -0.018 1.018 27 H -0.014 1.014 28 H 0.409 0.591 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.424 0.576 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.049 0.951 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.111 -20.498 2.784 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.176 1.176 7 C -0.591 4.591 8 H 0.105 0.895 9 C 0.145 3.855 10 N -0.359 5.359 11 C 0.276 3.724 12 O -0.468 6.468 13 C -0.077 4.077 14 N -0.249 5.249 15 C -0.067 4.067 16 C 0.321 3.679 17 O -0.410 6.410 18 O -0.334 6.334 19 C -0.021 4.021 20 C -0.230 4.230 21 C -0.014 4.014 22 O -0.322 6.322 23 C -0.012 4.012 24 C -0.178 4.178 25 H 0.076 0.924 26 H 0.000 1.000 27 H 0.004 0.996 28 H 0.245 0.755 29 H 0.123 0.877 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.285 0.715 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.964 -20.498 2.317 23.847 hybrid contribution -0.330 1.029 0.203 1.099 sum 11.634 -19.469 2.521 22.820 Atomic orbital electron populations 1.70153 1.08375 1.28490 1.50167 1.26090 0.95736 1.04007 0.93951 0.85157 0.78571 0.76948 0.78536 1.19735 1.21204 1.17602 1.21639 0.94395 0.90499 1.52585 0.89528 1.18474 0.88714 0.84481 0.93788 1.46150 1.11147 1.05375 1.73228 1.21479 0.90072 0.84861 0.76009 1.90687 1.19445 1.85308 1.51354 1.22002 0.93516 0.85621 1.06531 1.61056 1.35555 1.02007 1.26307 1.21613 0.92758 0.99951 0.92355 1.23488 0.85554 0.77295 0.81592 1.90685 1.65889 1.55203 1.29271 1.84474 1.44674 1.66710 1.37566 1.21972 0.91232 0.89048 0.99852 1.22979 0.98682 1.01219 1.00131 1.22668 0.92221 0.83840 1.02648 1.87911 1.44756 1.40218 1.59309 1.22644 0.88466 0.98368 0.91713 1.22361 0.98715 0.94558 1.02125 0.92357 1.00026 0.99645 0.75464 0.87727 0.84603 0.86978 0.88426 0.71453 0.87970 0.88010 0.90932 0.87285 0.91574 0.88334 0.91615 0.93249 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 2 C 0.00 0.08 5.46 84.65 0.46 0.55 16 3 Si 0.98 41.79 29.54 68.60 2.03 43.82 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.55 -29.56 9.28 25.60 0.24 -29.32 16 8 H 0.09 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.27 14.57 5.43 85.63 0.46 15.04 16 10 N -0.71 -28.33 5.55 -466.79 -2.59 -30.92 16 11 C 0.49 18.56 7.26 87.66 0.64 19.20 16 12 O -0.59 -29.11 15.39 -3.05 -0.05 -29.16 16 13 C 0.05 1.24 4.68 85.56 0.40 1.64 16 14 N -0.53 -13.46 3.65 -879.35 -3.21 -16.67 16 15 C 0.06 1.59 4.60 85.56 0.39 1.98 16 16 C 0.48 13.85 6.28 71.24 0.45 14.29 16 17 O -0.52 -18.36 14.45 21.97 0.32 -18.04 16 18 O -0.52 -11.77 13.42 -51.39 -0.69 -12.46 16 19 C 0.09 1.62 2.29 45.03 0.10 1.72 16 20 C -0.19 -2.47 4.85 30.68 0.15 -2.32 16 21 C 0.06 0.77 6.84 72.01 0.49 1.26 16 22 O -0.40 -7.22 10.77 -148.98 -1.60 -8.82 16 23 C 0.07 1.09 6.84 72.01 0.49 1.58 16 24 C -0.14 -2.96 3.93 30.68 0.12 -2.84 16 25 H 0.27 15.15 8.31 -92.70 -0.77 14.37 16 26 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 27 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 28 H 0.41 12.91 8.32 -92.71 -0.77 12.14 16 29 H 0.11 1.67 7.32 -2.39 -0.02 1.65 16 30 H 0.14 2.39 7.87 -2.39 -0.02 2.37 16 31 H 0.11 2.12 5.35 -2.39 -0.01 2.10 16 32 H 0.10 2.91 6.68 -2.39 -0.02 2.89 16 33 H 0.42 6.03 9.10 -74.05 -0.67 5.36 16 34 H 0.10 1.70 7.97 -2.38 -0.02 1.68 16 35 H 0.10 0.90 7.11 -2.39 -0.02 0.88 16 36 H 0.07 1.03 5.83 -2.38 -0.01 1.02 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 1.17 5.39 -2.39 -0.01 1.15 16 42 H 0.07 1.87 7.16 -2.39 -0.02 1.86 16 Total: -1.00 -81.71 337.97 -1.49 -83.20 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.38 Total: 22.46 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 4.40 Total: 22.77 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -5.52 Total: -103.76 kcal Atomic # 8 Polarization: -66.46 SS G_CDS: -2.02 Total: -68.49 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -81.71 -1.49 -83.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.767 kcal (2) G-P(sol) polarization free energy of solvation -81.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds