Wall clock time and date at job start Tue Mar 31 2020 03:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00406 * 2 1 4 4 H 1.48500 * 109.47392 * 269.72701 * 3 2 1 5 5 H 1.48504 * 109.46801 * 29.72805 * 3 2 1 6 6 H 1.48493 * 109.47097 * 149.72495 * 3 2 1 7 7 C 1.37878 * 119.99489 * 179.73184 * 2 1 3 8 8 H 1.08002 * 119.99991 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99946 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47233 * 179.97438 * 9 7 2 11 11 C 1.34770 * 119.99896 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00371 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00224 * 180.02562 * 11 10 9 14 14 N 1.46896 * 109.47212 * 179.97438 * 13 11 10 15 15 C 1.46902 * 110.99491 * 178.76633 * 14 13 11 16 16 C 1.52998 * 109.52242 * 54.16862 * 15 14 13 17 17 C 1.50696 * 109.47192 * 59.41245 * 16 15 14 18 18 O 1.20825 * 120.00316 * 357.33439 * 17 16 15 19 19 O 1.34234 * 120.00186 * 177.34264 * 17 16 15 20 20 C 1.53170 * 109.52593 * 293.97602 * 15 14 13 21 21 C 1.53178 * 109.03732 * 297.07506 * 20 15 14 22 22 C 1.53092 * 109.16538 * 303.02029 * 21 20 15 23 23 O 1.42898 * 109.41710 * 57.60528 * 22 21 20 24 24 C 1.42910 * 114.09731 * 298.84707 * 23 22 21 25 25 H 0.97005 * 119.99324 * 0.27235 * 1 2 3 26 26 H 1.08998 * 109.47288 * 299.99878 * 9 7 2 27 27 H 1.09004 * 109.47078 * 59.99640 * 9 7 2 28 28 H 0.96997 * 119.99790 * 359.97438 * 10 9 7 29 29 H 1.09007 * 109.46586 * 299.99761 * 13 11 10 30 30 H 1.08997 * 109.47264 * 59.98956 * 13 11 10 31 31 H 1.00894 * 111.00422 * 302.72380 * 14 13 11 32 32 H 1.09002 * 109.47036 * 179.40725 * 16 15 14 33 33 H 1.08996 * 109.46996 * 299.40747 * 16 15 14 34 34 H 0.96702 * 116.99819 * 179.97438 * 19 17 16 35 35 H 1.08998 * 109.54355 * 56.94470 * 20 15 14 36 36 H 1.09002 * 109.54689 * 177.21137 * 20 15 14 37 37 H 1.09000 * 109.52164 * 183.11489 * 21 20 15 38 38 H 1.09003 * 109.57415 * 62.95973 * 21 20 15 39 39 H 1.08998 * 109.47992 * 297.62285 * 22 21 20 40 40 H 1.09003 * 109.48179 * 177.59369 * 22 21 20 41 41 H 1.09000 * 109.47604 * 301.16954 * 24 23 22 42 42 H 1.09000 * 109.47695 * 181.13885 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.5026 2.0430 -1.4000 5 1 1.4439 2.6543 0.6943 6 1 3.5439 1.4417 0.7058 7 6 2.0045 -1.1941 0.0056 8 1 1.4644 -2.1294 0.0104 9 6 3.5115 -1.1942 0.0050 10 7 3.9997 -2.5755 0.0122 11 6 5.3247 -2.8218 0.0135 12 8 6.1130 -1.9000 0.0083 13 6 5.8271 -4.2426 0.0204 14 7 7.2960 -4.2426 0.0199 15 6 7.8224 -5.6137 0.0560 16 6 7.2171 -6.4241 -1.0919 17 6 7.5676 -5.7738 -2.4054 18 8 8.1922 -4.7397 -2.4199 19 8 7.1859 -6.3435 -3.5593 20 6 7.4585 -6.2667 1.3929 21 6 8.1338 -5.4909 2.5281 22 6 9.6454 -5.4626 2.2877 23 8 9.9130 -4.8714 1.0146 24 6 9.3461 -5.5807 -0.0890 25 1 -0.4849 0.8401 -0.0040 26 1 3.8745 -0.6848 -0.8876 27 1 3.8752 -0.6760 0.8923 28 1 3.3694 -3.3126 0.0168 29 1 5.4636 -4.7521 0.9128 30 1 5.4637 -4.7607 -0.8671 31 1 7.6575 -3.7374 -0.7751 32 1 7.6161 -7.4382 -1.0706 33 1 6.1333 -6.4577 -0.9809 34 1 7.4337 -5.8891 -4.3762 35 1 6.3772 -6.2430 1.5279 36 1 7.8057 -7.2999 1.4005 37 1 7.9253 -5.9815 3.4788 38 1 7.7496 -4.4711 2.5524 39 1 10.0354 -6.4803 2.3049 40 1 10.1270 -4.8754 3.0697 41 1 9.7321 -6.5999 -0.1028 42 1 9.6120 -5.0784 -1.0191 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:39 Heat of formation + Delta-G solvation = -167.182924 kcal Electronic energy + Delta-G solvation = -25594.464812 eV Core-core repulsion = 21767.721241 eV Total energy + Delta-G solvation = -3826.743570 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30162 -39.56469 -38.73472 -36.75202 -35.88638 -34.24712 -32.64413 -32.34872 -31.59097 -28.78617 -28.12573 -25.99038 -25.00110 -23.32558 -21.91702 -21.42264 -19.89365 -19.34987 -18.41566 -17.63016 -16.91371 -16.67851 -16.42511 -16.05016 -15.79069 -15.48301 -15.21779 -14.86267 -14.60109 -14.24776 -13.96563 -13.53570 -13.33823 -13.10652 -12.93241 -12.67848 -12.48891 -12.39075 -12.22241 -11.98645 -11.79814 -11.63901 -11.27082 -11.18990 -10.99937 -10.74861 -10.70445 -10.30348 -9.95528 -9.50619 -9.48251 -9.15523 -8.76733 -8.37646 -8.10116 -6.21150 -4.23233 1.80642 2.63862 3.26235 3.29518 3.34753 3.44658 3.59535 3.86838 4.22766 4.34479 4.36166 4.41313 4.59538 4.81541 4.83615 4.97182 5.01874 5.09692 5.14539 5.19279 5.27160 5.33664 5.38177 5.45485 5.53040 5.60908 5.66555 5.80429 5.95383 6.16944 6.28358 6.78686 6.94311 7.09660 7.15998 7.26218 7.40441 7.43420 7.63629 8.15773 8.53650 8.76092 8.98644 9.39561 10.90767 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.003690 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.013120 B = 7585.901697 C = 8262.686734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.709 5.709 11 C 0.498 3.502 12 O -0.539 6.539 13 C 0.033 3.967 14 N -0.646 5.646 15 C 0.095 3.905 16 C -0.154 4.154 17 C 0.477 3.523 18 O -0.503 6.503 19 O -0.516 6.516 20 C -0.108 4.108 21 C -0.148 4.148 22 C 0.061 3.939 23 O -0.362 6.362 24 C 0.066 3.934 25 H 0.267 0.733 26 H 0.019 0.981 27 H 0.025 0.975 28 H 0.394 0.606 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.369 0.631 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.413 0.587 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.662 -19.389 -0.791 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.099 3.901 10 N -0.358 5.358 11 C 0.282 3.718 12 O -0.416 6.416 13 C -0.100 4.100 14 N -0.284 5.284 15 C 0.002 3.998 16 C -0.194 4.194 17 C 0.319 3.681 18 O -0.391 6.391 19 O -0.328 6.328 20 C -0.146 4.146 21 C -0.186 4.186 22 C -0.016 4.016 23 O -0.279 6.279 24 C -0.011 4.011 25 H 0.077 0.923 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.228 0.772 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.195 0.805 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.272 0.728 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 17.287 -18.196 0.205 25.099 hybrid contribution -0.466 0.167 -1.501 1.581 sum 16.821 -18.028 -1.296 24.691 Atomic orbital electron populations 1.69886 1.06216 1.27420 1.49535 1.24795 0.94787 0.99189 0.93835 0.86814 0.80623 0.83185 0.79073 1.19879 1.20885 1.18438 1.21095 0.88550 0.95185 1.53267 0.90305 1.19468 0.95139 0.78707 0.96747 1.46151 1.05599 1.10946 1.73151 1.20347 0.83122 0.90586 0.77702 1.90679 1.55365 1.45939 1.49649 1.21953 0.90306 0.95824 1.01907 1.60218 1.04765 1.11422 1.52010 1.21524 0.96537 0.88892 0.92802 1.22312 1.05497 1.02295 0.89247 1.23515 0.75497 0.82851 0.86221 1.90676 1.37449 1.23453 1.87558 1.84524 1.74631 1.56204 1.17432 1.21637 1.01545 0.98243 0.93136 1.22071 0.96159 1.03004 0.97360 1.22557 0.95255 0.97496 0.86287 1.88036 1.73961 1.52098 1.13824 1.22853 0.89783 0.96775 0.91693 0.92277 0.96294 0.95691 0.77238 0.88259 0.93424 0.80458 0.86989 0.86654 0.72781 0.90889 0.91436 0.91361 0.89155 0.93971 0.89077 0.93261 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.54 -15.01 9.83 -34.44 -0.34 -15.35 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 C 0.22 5.56 4.50 -5.19 -0.02 5.53 16 10 N -0.71 -14.48 5.55 -61.47 -0.34 -14.82 16 11 C 0.50 9.72 7.87 -10.99 -0.09 9.63 16 12 O -0.54 -12.87 16.23 5.55 0.09 -12.78 16 13 C 0.03 0.45 5.33 -4.98 -0.03 0.42 16 14 N -0.65 -9.03 4.88 -101.08 -0.49 -9.53 16 15 C 0.10 0.95 0.30 -131.46 -0.04 0.91 16 16 C -0.15 -1.18 4.35 -27.89 -0.12 -1.30 16 17 C 0.48 4.58 7.70 36.00 0.28 4.85 16 18 O -0.50 -6.46 12.42 -18.75 -0.23 -6.69 16 19 O -0.52 -3.90 13.42 -39.27 -0.53 -4.43 16 20 C -0.11 -0.90 4.68 -26.55 -0.12 -1.02 16 21 C -0.15 -1.42 5.97 -26.59 -0.16 -1.58 16 22 C 0.06 0.59 6.84 37.20 0.25 0.85 16 23 O -0.36 -4.65 10.67 -35.23 -0.38 -5.02 16 24 C 0.07 0.71 5.33 37.21 0.20 0.91 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.50 7.58 -51.93 -0.39 0.11 16 27 H 0.03 0.67 7.19 -51.93 -0.37 0.29 16 28 H 0.39 6.97 8.32 -40.82 -0.34 6.63 16 29 H 0.10 1.15 6.36 -51.92 -0.33 0.82 16 30 H 0.05 0.56 6.18 -51.93 -0.32 0.24 16 31 H 0.37 6.10 5.86 -39.29 -0.23 5.87 16 32 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.12 0.80 6.40 -51.93 -0.33 0.46 16 34 H 0.41 1.68 9.10 45.56 0.41 2.09 16 35 H 0.07 0.58 6.40 -51.93 -0.33 0.25 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.15 7.76 -51.93 -0.40 0.74 16 39 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.11 1.34 5.74 -51.93 -0.30 1.04 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -35.78 335.41 -6.06 -41.84 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.05 Total: 9.16 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -0.29 Total: 5.96 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.06 Total: -50.23 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -1.05 Total: -28.92 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.78 -6.06 -41.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.339 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds