Wall clock time and date at job start Tue Mar 31 2020 03:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00406 * 2 1 4 4 H 1.48500 * 109.47392 * 269.72701 * 3 2 1 5 5 H 1.48504 * 109.46801 * 29.72805 * 3 2 1 6 6 H 1.48493 * 109.47097 * 149.72495 * 3 2 1 7 7 C 1.37878 * 119.99489 * 179.73184 * 2 1 3 8 8 H 1.08002 * 119.99991 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99946 * 179.97438 * 7 2 1 10 10 N 1.46501 * 109.47233 * 179.97438 * 9 7 2 11 11 C 1.34770 * 119.99896 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00371 * 359.97438 * 11 10 9 13 13 C 1.50703 * 120.00224 * 180.02562 * 11 10 9 14 14 N 1.46896 * 109.47212 * 179.97438 * 13 11 10 15 15 C 1.46902 * 110.99491 * 178.76633 * 14 13 11 16 16 C 1.52998 * 109.52242 * 54.16862 * 15 14 13 17 17 C 1.50696 * 109.47192 * 59.41245 * 16 15 14 18 18 O 1.20825 * 120.00316 * 357.33439 * 17 16 15 19 19 O 1.34234 * 120.00186 * 177.34264 * 17 16 15 20 20 C 1.53170 * 109.52593 * 293.97602 * 15 14 13 21 21 C 1.53178 * 109.03732 * 297.07506 * 20 15 14 22 22 C 1.53092 * 109.16538 * 303.02029 * 21 20 15 23 23 O 1.42898 * 109.41710 * 57.60528 * 22 21 20 24 24 C 1.42910 * 114.09731 * 298.84707 * 23 22 21 25 25 H 0.97005 * 119.99324 * 0.27235 * 1 2 3 26 26 H 1.08998 * 109.47288 * 299.99878 * 9 7 2 27 27 H 1.09004 * 109.47078 * 59.99640 * 9 7 2 28 28 H 0.96997 * 119.99790 * 359.97438 * 10 9 7 29 29 H 1.09007 * 109.46586 * 299.99761 * 13 11 10 30 30 H 1.08997 * 109.47264 * 59.98956 * 13 11 10 31 31 H 1.00894 * 111.00422 * 302.72380 * 14 13 11 32 32 H 1.09002 * 109.47036 * 179.40725 * 16 15 14 33 33 H 1.08996 * 109.46996 * 299.40747 * 16 15 14 34 34 H 0.96702 * 116.99819 * 179.97438 * 19 17 16 35 35 H 1.08998 * 109.54355 * 56.94470 * 20 15 14 36 36 H 1.09002 * 109.54689 * 177.21137 * 20 15 14 37 37 H 1.09000 * 109.52164 * 183.11489 * 21 20 15 38 38 H 1.09003 * 109.57415 * 62.95973 * 21 20 15 39 39 H 1.08998 * 109.47992 * 297.62285 * 22 21 20 40 40 H 1.09003 * 109.48179 * 177.59369 * 22 21 20 41 41 H 1.09000 * 109.47604 * 301.16954 * 24 23 22 42 42 H 1.09000 * 109.47695 * 181.13885 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.5026 2.0430 -1.4000 5 1 1.4439 2.6543 0.6943 6 1 3.5439 1.4417 0.7058 7 6 2.0045 -1.1941 0.0056 8 1 1.4644 -2.1294 0.0104 9 6 3.5115 -1.1942 0.0050 10 7 3.9997 -2.5755 0.0122 11 6 5.3247 -2.8218 0.0135 12 8 6.1130 -1.9000 0.0083 13 6 5.8271 -4.2426 0.0204 14 7 7.2960 -4.2426 0.0199 15 6 7.8224 -5.6137 0.0560 16 6 7.2171 -6.4241 -1.0919 17 6 7.5676 -5.7738 -2.4054 18 8 8.1922 -4.7397 -2.4199 19 8 7.1859 -6.3435 -3.5593 20 6 7.4585 -6.2667 1.3929 21 6 8.1338 -5.4909 2.5281 22 6 9.6454 -5.4626 2.2877 23 8 9.9130 -4.8714 1.0146 24 6 9.3461 -5.5807 -0.0890 25 1 -0.4849 0.8401 -0.0040 26 1 3.8745 -0.6848 -0.8876 27 1 3.8752 -0.6760 0.8923 28 1 3.3694 -3.3126 0.0168 29 1 5.4636 -4.7521 0.9128 30 1 5.4637 -4.7607 -0.8671 31 1 7.6575 -3.7374 -0.7751 32 1 7.6161 -7.4382 -1.0706 33 1 6.1333 -6.4577 -0.9809 34 1 7.4337 -5.8891 -4.3762 35 1 6.3772 -6.2430 1.5279 36 1 7.8057 -7.2999 1.4005 37 1 7.9253 -5.9815 3.4788 38 1 7.7496 -4.4711 2.5524 39 1 10.0354 -6.4803 2.3049 40 1 10.1270 -4.8754 3.0697 41 1 9.7321 -6.5999 -0.1028 42 1 9.6120 -5.0784 -1.0191 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610621786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:38 Heat of formation + Delta-G solvation = -198.077507 kcal Electronic energy + Delta-G solvation = -25595.804501 eV Core-core repulsion = 21767.721241 eV Total energy + Delta-G solvation = -3828.083260 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06153 -40.56294 -40.05478 -37.50535 -36.75192 -36.12225 -34.41776 -33.42544 -32.52919 -30.25323 -29.22303 -27.10897 -25.94306 -24.13280 -23.76140 -22.09558 -21.52624 -20.11651 -19.30275 -19.07172 -18.10770 -17.64877 -17.43752 -17.02530 -16.90293 -16.78402 -16.46030 -16.16371 -15.62757 -15.54177 -15.22798 -14.78497 -14.57767 -14.30747 -14.08857 -13.83739 -13.74721 -13.51161 -13.15069 -13.09397 -12.90094 -12.73190 -12.64032 -12.45588 -12.00381 -11.96048 -11.87658 -11.67199 -11.43203 -11.07050 -10.93645 -10.77496 -10.25740 -9.94354 -9.31004 -8.42022 -6.48447 1.13268 1.30084 1.32876 1.45830 1.73626 2.06642 2.25983 2.33818 2.93438 2.99210 3.35171 3.57810 3.68570 3.89121 3.96363 4.15754 4.18113 4.19898 4.36243 4.44912 4.47772 4.50976 4.63045 4.68580 4.77377 4.80293 4.88443 4.98995 5.00597 5.15713 5.24338 5.27513 5.51044 5.51723 5.57165 6.00112 6.11630 6.34385 6.48748 6.52428 6.86170 6.94332 7.14929 7.43814 8.72566 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.003690 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.013120 B = 7585.901697 C = 8262.686734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.233 3.767 10 N -0.706 5.706 11 C 0.494 3.506 12 O -0.587 6.587 13 C 0.048 3.952 14 N -0.668 5.668 15 C 0.095 3.905 16 C -0.149 4.149 17 C 0.475 3.525 18 O -0.543 6.543 19 O -0.512 6.512 20 C -0.106 4.106 21 C -0.147 4.147 22 C 0.056 3.944 23 O -0.398 6.398 24 C 0.063 3.937 25 H 0.273 0.727 26 H 0.006 0.994 27 H 0.009 0.991 28 H 0.409 0.591 29 H 0.128 0.872 30 H 0.075 0.925 31 H 0.352 0.648 32 H 0.149 0.851 33 H 0.131 0.869 34 H 0.426 0.574 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.114 -21.969 -0.601 27.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.109 3.891 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.467 6.467 13 C -0.084 4.084 14 N -0.305 5.305 15 C 0.003 3.997 16 C -0.188 4.188 17 C 0.319 3.681 18 O -0.434 6.434 19 O -0.325 6.325 20 C -0.143 4.143 21 C -0.185 4.185 22 C -0.020 4.020 23 O -0.317 6.317 24 C -0.014 4.014 25 H 0.082 0.918 26 H 0.024 0.976 27 H 0.027 0.973 28 H 0.245 0.755 29 H 0.146 0.854 30 H 0.092 0.908 31 H 0.176 0.824 32 H 0.167 0.833 33 H 0.148 0.852 34 H 0.288 0.712 35 H 0.099 0.901 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.720 -20.841 0.387 27.359 hybrid contribution -0.567 0.905 -1.581 1.908 sum 17.153 -19.936 -1.195 26.327 Atomic orbital electron populations 1.69974 1.07528 1.28587 1.50687 1.25543 0.95506 1.02447 0.93615 0.85908 0.79182 0.79704 0.79391 1.19108 1.19560 1.18962 1.21279 0.89759 0.94684 1.52557 0.91898 1.19052 0.93474 0.81274 0.95311 1.45986 1.06690 1.09561 1.73452 1.21404 0.81988 0.92792 0.75665 1.90654 1.56378 1.48167 1.51533 1.21890 0.90605 0.91502 1.04357 1.60223 1.04538 1.14225 1.51490 1.21615 0.95966 0.87226 0.94845 1.22344 1.06256 1.03285 0.86954 1.23966 0.74604 0.82255 0.87252 1.90688 1.39342 1.25279 1.88096 1.84496 1.74169 1.56078 1.17796 1.21711 1.01978 0.99494 0.91147 1.22029 0.96004 1.01268 0.99206 1.22716 0.95594 0.98702 0.85035 1.87983 1.74653 1.53701 1.15318 1.22913 0.90477 0.97732 0.90238 0.91806 0.97584 0.97337 0.75499 0.85440 0.90759 0.82447 0.83344 0.85166 0.71243 0.90063 0.88001 0.89313 0.93045 0.91276 0.89448 0.90205 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.63 13.96 21.45 0.30 -55.33 16 2 C 0.03 1.68 5.47 84.65 0.46 2.15 16 3 Si 0.93 45.12 27.47 68.60 1.88 47.01 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -12.93 6.54 99.48 0.65 -12.28 16 7 C -0.54 -30.36 9.83 25.60 0.25 -30.11 16 8 H 0.06 3.63 7.84 -2.91 -0.02 3.60 16 9 C 0.23 11.78 4.50 85.63 0.39 12.16 16 10 N -0.71 -28.60 5.55 -466.78 -2.59 -31.19 16 11 C 0.49 19.15 7.87 87.66 0.69 19.84 16 12 O -0.59 -28.67 16.23 -3.04 -0.05 -28.72 16 13 C 0.05 1.23 5.33 85.56 0.46 1.69 16 14 N -0.67 -18.10 4.88 -473.70 -2.31 -20.42 16 15 C 0.10 1.65 0.30 3.62 0.00 1.65 16 16 C -0.15 -1.72 4.35 29.85 0.13 -1.59 16 17 C 0.47 8.17 7.70 71.23 0.55 8.72 16 18 O -0.54 -13.84 12.42 21.97 0.27 -13.57 16 19 O -0.51 -6.56 13.42 -51.46 -0.69 -7.25 16 20 C -0.11 -1.35 4.68 30.71 0.14 -1.20 16 21 C -0.15 -2.52 5.97 30.68 0.18 -2.33 16 22 C 0.06 0.99 6.84 72.01 0.49 1.49 16 23 O -0.40 -10.04 10.67 -148.98 -1.59 -11.63 16 24 C 0.06 1.25 5.33 72.01 0.38 1.64 16 25 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 26 H 0.01 0.33 7.58 -2.39 -0.02 0.31 16 27 H 0.01 0.47 7.19 -2.39 -0.02 0.45 16 28 H 0.41 14.02 8.32 -92.71 -0.77 13.25 16 29 H 0.13 2.55 6.36 -2.38 -0.02 2.53 16 30 H 0.07 1.52 6.18 -2.39 -0.01 1.51 16 31 H 0.35 11.80 5.86 -89.70 -0.53 11.27 16 32 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.13 1.17 6.40 -2.39 -0.02 1.15 16 34 H 0.43 2.81 9.10 -74.06 -0.67 2.14 16 35 H 0.08 0.92 6.40 -2.39 -0.02 0.90 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.29 7.76 -2.39 -0.02 1.27 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 2.13 5.74 -2.39 -0.01 2.11 16 Total: -1.00 -80.47 335.41 -1.59 -82.07 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -0.94 Total: 24.93 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 4.13 Total: 14.09 kcal Atomic # 7 Polarization: -102.33 SS G_CDS: -4.60 Total: -106.93 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -2.06 Total: -61.16 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.01 kcal Total: -80.47 -1.59 -82.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.011 kcal (2) G-P(sol) polarization free energy of solvation -80.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds