Wall clock time and date at job start Tue Mar 31 2020 03:42:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53002 * 109.47081 * 2 1
4 4 C 1.52994 * 109.47178 * 239.99367 * 2 1 3
5 5 O 1.45209 * 109.47121 * 119.99592 * 2 1 3
6 6 C 1.34635 * 116.99832 * 60.00111 * 5 2 1
7 7 O 1.21511 * 119.99998 * 359.97438 * 6 5 2
8 8 N 1.34774 * 120.00071 * 180.02562 * 6 5 2
9 9 C 1.47425 * 125.65138 * 179.97438 * 8 6 5
10 10 C 1.54908 * 104.92961 * 204.15299 * 9 8 6
11 11 H 1.09008 * 111.00494 * 81.01141 * 10 9 8
12 12 N 1.46494 * 111.00587 * 204.82382 * 10 9 8
13 13 C 1.34787 * 120.00004 * 273.54798 * 12 10 9
14 14 O 1.21684 * 119.99669 * 359.97438 * 13 12 10
15 15 C 1.46370 * 119.99926 * 180.02562 * 13 12 10
16 16 H 1.08002 * 119.99990 * 359.97438 * 15 13 12
17 17 C 1.40051 * 119.99878 * 180.02562 * 15 13 12
18 18 N 1.30673 * 119.99927 * 359.97438 * 17 15 13
19 19 Si 1.86795 * 119.99984 * 179.97438 * 17 15 13
20 20 H 1.48500 * 109.47373 * 59.99682 * 19 17 15
21 21 H 1.48497 * 109.47548 * 179.97438 * 19 17 15
22 22 H 1.48498 * 109.47449 * 299.99813 * 19 17 15
23 23 C 1.55154 * 101.58289 * 322.93718 * 10 9 8
24 24 H 1.09002 * 110.72290 * 153.86663 * 23 10 9
25 25 O 1.42901 * 110.72214 * 276.96079 * 23 10 9
26 26 C 1.47290 * 125.79121 * 359.97438 * 8 6 5
27 27 H 1.09007 * 109.47236 * 300.00335 * 1 2 3
28 28 H 1.08996 * 109.47430 * 60.00400 * 1 2 3
29 29 H 1.09001 * 109.47267 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.46745 * 180.02562 * 3 2 1
31 31 H 1.09004 * 109.46692 * 299.99410 * 3 2 1
32 32 H 1.08999 * 109.47330 * 60.00007 * 3 2 1
33 33 H 1.08998 * 109.47542 * 300.00035 * 4 2 1
34 34 H 1.09004 * 109.47274 * 60.00174 * 4 2 1
35 35 H 1.08998 * 109.47145 * 179.97438 * 4 2 1
36 36 H 1.09002 * 110.36696 * 85.25946 * 9 8 6
37 37 H 1.08995 * 110.36608 * 323.04783 * 9 8 6
38 38 H 0.96999 * 120.00536 * 93.54386 * 12 10 9
39 39 H 0.96994 * 119.99662 * 180.02562 * 18 17 15
40 40 H 0.96693 * 114.00397 * 180.02562 * 25 23 10
41 41 H 1.09004 * 109.85762 * 59.50172 * 26 8 6
42 42 H 1.08995 * 110.00297 * 298.43119 * 26 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7214 -1.2491
5 8 2.0140 -0.6844 1.1857
6 6 1.6522 -1.9722 1.3385
7 8 0.9509 -2.5094 0.5042
8 7 2.0672 -2.6653 2.4173
9 6 1.7467 -4.0745 2.7088
10 6 1.8903 -4.2068 4.2455
11 1 0.9973 -3.8431 4.7542
12 7 2.1824 -5.5903 4.6284
13 6 1.1738 -6.4630 4.8230
14 8 0.0206 -6.1015 4.6811
15 6 1.4657 -7.8452 5.2062
16 1 2.4892 -8.1659 5.3325
17 6 0.4177 -8.7521 5.4079
18 7 -0.8207 -8.3642 5.2545
19 14 0.7902 -10.5163 5.8961
20 1 1.5279 -10.5280 7.1848
21 1 -0.4820 -11.2672 6.0477
22 1 1.6208 -11.1561 4.8445
23 6 3.1050 -3.2831 4.5256
24 1 3.0689 -2.8966 5.5442
25 8 4.3323 -3.9773 4.2935
26 6 2.9159 -2.1435 3.5022
27 1 -0.3634 0.5139 0.8900
28 1 -0.3634 0.5137 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6767 1.9563 -0.8901
32 1 1.6767 1.9564 0.8900
33 1 1.6767 -1.7490 -1.2491
34 1 1.6767 -0.2076 -2.1392
35 1 3.1299 -0.7210 -1.2493
36 1 2.4505 -4.7359 2.2036
37 1 0.7259 -4.3026 2.4021
38 1 3.1016 -5.8785 4.7418
39 1 -1.5464 -8.9923 5.3946
40 1 5.1225 -3.4439 4.4548
41 1 2.4266 -1.2943 3.9792
42 1 3.8836 -1.8382 3.1045
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001634214508.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:42:42
Heat of formation + Delta-G solvation = -160.420659 kcal
Electronic energy + Delta-G solvation = -25348.132119 eV
Core-core repulsion = 21521.681783 eV
Total energy + Delta-G solvation = -3826.450337 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.156 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-40.75076 -39.21281 -37.04926 -36.64221 -35.16879 -34.06033 -32.97142 -32.17174
-29.44195 -28.21306 -27.54889 -27.47092 -26.06778 -23.88128 -21.59429 -20.92375
-19.54354 -19.36158 -18.18838 -17.21673 -17.07613 -16.49864 -16.25348 -15.32778
-15.26492 -14.95938 -14.39450 -14.23162 -14.10849 -13.94908 -13.45206 -13.32286
-13.20094 -12.65425 -12.36549 -12.29988 -12.25439 -12.02105 -11.98968 -11.78188
-11.51255 -11.39072 -11.23572 -11.09339 -10.92401 -10.68979 -10.42556 -10.39815
-10.30006 -10.20027 -9.85714 -8.85138 -8.60273 -7.67927 -7.58070 -6.18935
-4.64328 2.13486 2.96041 3.17395 3.22272 3.24188 3.86182 4.06451
4.15602 4.46237 4.54432 4.59823 4.63201 4.75926 4.78203 4.96325
5.18911 5.30035 5.39012 5.40929 5.47095 5.53883 5.56240 5.62221
5.64877 5.74795 5.81966 5.82671 5.99281 6.17563 6.21189 6.26653
6.33534 6.45761 6.55250 7.44091 7.57557 7.59764 7.95739 8.06302
8.33272 8.44927 9.02504 9.52310 10.58658 10.76522
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.026099 B = 0.003289 C = 0.003067
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1072.584302 B = 8510.742451 C = 9128.475171
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.135 3.865
3 C -0.139 4.139
4 C -0.183 4.183
5 O -0.365 6.365
6 C 0.666 3.334
7 O -0.565 6.565
8 N -0.598 5.598
9 C 0.115 3.885
10 C 0.161 3.839
11 H 0.102 0.898
12 N -0.746 5.746
13 C 0.553 3.447
14 O -0.579 6.579
15 C -0.542 4.542
16 H 0.068 0.932
17 C 0.087 3.913
18 N -0.767 5.767
19 Si 0.909 3.091
20 H -0.268 1.268
21 H -0.281 1.281
22 H -0.268 1.268
23 C 0.083 3.917
24 H 0.084 0.916
25 O -0.548 6.548
26 C 0.080 3.920
27 H 0.059 0.941
28 H 0.068 0.932
29 H 0.089 0.911
30 H 0.065 0.935
31 H 0.079 0.921
32 H 0.066 0.934
33 H 0.089 0.911
34 H 0.068 0.932
35 H 0.058 0.942
36 H 0.074 0.926
37 H 0.087 0.913
38 H 0.393 0.607
39 H 0.269 0.731
40 H 0.377 0.623
41 H 0.077 0.923
42 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.539 17.492 -5.897 20.779
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C 0.098 3.902
3 C -0.196 4.196
4 C -0.241 4.241
5 O -0.280 6.280
6 C 0.421 3.579
7 O -0.454 6.454
8 N -0.339 5.339
9 C -0.008 4.008
10 C 0.052 3.948
11 H 0.119 0.881
12 N -0.402 5.402
13 C 0.357 3.643
14 O -0.462 6.462
15 C -0.579 4.579
16 H 0.087 0.913
17 C -0.133 4.133
18 N -0.395 5.395
19 Si 0.734 3.266
20 H -0.193 1.193
21 H -0.206 1.206
22 H -0.193 1.193
23 C 0.022 3.978
24 H 0.101 0.899
25 O -0.353 6.353
26 C -0.044 4.044
27 H 0.078 0.922
28 H 0.087 0.913
29 H 0.108 0.892
30 H 0.084 0.916
31 H 0.097 0.903
32 H 0.085 0.915
33 H 0.107 0.893
34 H 0.087 0.913
35 H 0.077 0.923
36 H 0.092 0.908
37 H 0.105 0.895
38 H 0.227 0.773
39 H 0.080 0.920
40 H 0.224 0.776
41 H 0.095 0.905
42 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 7.808 17.150 -6.517 19.939
hybrid contribution 1.016 -0.381 0.286 1.122
sum 8.824 16.769 -6.231 19.947
Atomic orbital electron populations
1.22523 0.93996 1.05329 1.02295 1.22035 0.94440 0.91389 0.82311
1.21842 1.02078 0.92673 1.02987 1.22515 1.01407 1.03725 0.96409
1.86283 1.71700 1.23785 1.46253 1.17480 0.78896 0.80174 0.81377
1.90911 1.41265 1.70448 1.42748 1.47122 1.52680 1.13323 1.20821
1.22914 1.02651 0.77786 0.97424 1.21633 0.94964 0.85773 0.92397
0.88065 1.45961 1.10538 1.07662 1.76009 1.18306 0.83403 0.85473
0.77072 1.90613 1.20339 1.78900 1.56342 1.20823 0.93809 0.93446
1.49838 0.91336 1.25711 0.94494 0.99928 0.93144 1.70007 0.99260
1.35151 1.35108 0.86412 0.78272 0.82260 0.79672 1.19292 1.20601
1.19259 1.23144 0.86140 0.91852 0.96628 0.89870 1.86537 1.14768
1.42141 1.91852 1.22823 0.95462 0.97466 0.88670 0.92188 0.91276
0.89189 0.91610 0.90260 0.91535 0.89251 0.91273 0.92305 0.90768
0.89458 0.77347 0.92011 0.77605 0.90499 0.90807
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16
2 C 0.14 1.56 1.13 -90.62 -0.10 1.46 16
3 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16
4 C -0.18 -2.08 8.37 37.15 0.31 -1.77 16
5 O -0.37 -5.15 9.50 -40.31 -0.38 -5.53 16
6 C 0.67 11.23 7.93 54.05 0.43 11.66 16
7 O -0.56 -10.92 12.14 -19.28 -0.23 -11.16 16
8 N -0.60 -9.67 3.34 -176.08 -0.59 -10.26 16
9 C 0.11 2.18 6.59 -2.53 -0.02 2.16 16
10 C 0.16 2.99 3.20 -65.79 -0.21 2.78 16
11 H 0.10 2.05 7.73 -51.92 -0.40 1.65 16
12 N -0.75 -16.38 5.18 -53.13 -0.28 -16.66 16
13 C 0.55 15.47 7.75 -12.98 -0.10 15.37 16
14 O -0.58 -18.39 14.76 5.20 0.08 -18.32 16
15 C -0.54 -15.22 9.54 -35.63 -0.34 -15.56 16
16 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16
17 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16
18 N -0.77 -22.94 11.83 55.55 0.66 -22.29 16
19 Si 0.91 20.15 29.56 -169.99 -5.02 15.13 16
20 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16
21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16
23 C 0.08 1.07 4.19 -24.90 -0.10 0.96 16
24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
25 O -0.55 -6.68 12.14 -35.23 -0.43 -7.10 16
26 C 0.08 0.96 6.68 -2.92 -0.02 0.94 16
27 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16
28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
29 H 0.09 1.33 5.88 -51.93 -0.31 1.03 16
30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
33 H 0.09 1.29 5.88 -51.93 -0.31 0.98 16
34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
36 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16
37 H 0.09 1.92 8.03 -51.93 -0.42 1.51 16
38 H 0.39 7.95 7.54 -40.82 -0.31 7.64 16
39 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16
40 H 0.38 2.59 9.12 45.56 0.42 3.00 16
41 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16
42 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16
LS Contribution 347.67 15.07 5.24 5.24
Total: -1.00 -36.08 347.67 -6.08 -42.16
By element:
Atomic # 1 Polarization: 16.60 SS G_CDS: -5.51 Total: 11.09 kcal
Atomic # 6 Polarization: 17.30 SS G_CDS: 0.39 Total: 17.69 kcal
Atomic # 7 Polarization: -48.99 SS G_CDS: -0.21 Total: -49.20 kcal
Atomic # 8 Polarization: -41.14 SS G_CDS: -0.97 Total: -42.11 kcal
Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -36.08 -6.08 -42.16 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001634214508.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -118.258 kcal
(2) G-P(sol) polarization free energy of solvation -36.081 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.339 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal
(6) G-S(sol) free energy of system = (1) + (5) -160.421 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds