Wall clock time and date at job start Tue Mar 31 2020 03:42:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53002 * 109.47081 * 2 1
4 4 C 1.52994 * 109.47178 * 239.99367 * 2 1 3
5 5 O 1.45209 * 109.47121 * 119.99592 * 2 1 3
6 6 C 1.34635 * 116.99832 * 60.00111 * 5 2 1
7 7 O 1.21511 * 119.99998 * 359.97438 * 6 5 2
8 8 N 1.34774 * 120.00071 * 180.02562 * 6 5 2
9 9 C 1.47425 * 125.65138 * 179.97438 * 8 6 5
10 10 C 1.54908 * 104.92961 * 204.15299 * 9 8 6
11 11 H 1.09008 * 111.00494 * 81.01141 * 10 9 8
12 12 N 1.46494 * 111.00587 * 204.82382 * 10 9 8
13 13 C 1.34787 * 120.00004 * 273.54798 * 12 10 9
14 14 O 1.21684 * 119.99669 * 359.97438 * 13 12 10
15 15 C 1.46370 * 119.99926 * 180.02562 * 13 12 10
16 16 H 1.08002 * 119.99990 * 359.97438 * 15 13 12
17 17 C 1.40051 * 119.99878 * 180.02562 * 15 13 12
18 18 N 1.30673 * 119.99927 * 359.97438 * 17 15 13
19 19 Si 1.86795 * 119.99984 * 179.97438 * 17 15 13
20 20 H 1.48500 * 109.47373 * 59.99682 * 19 17 15
21 21 H 1.48497 * 109.47548 * 179.97438 * 19 17 15
22 22 H 1.48498 * 109.47449 * 299.99813 * 19 17 15
23 23 C 1.55154 * 101.58289 * 322.93718 * 10 9 8
24 24 H 1.09002 * 110.72290 * 153.86663 * 23 10 9
25 25 O 1.42901 * 110.72214 * 276.96079 * 23 10 9
26 26 C 1.47290 * 125.79121 * 359.97438 * 8 6 5
27 27 H 1.09007 * 109.47236 * 300.00335 * 1 2 3
28 28 H 1.08996 * 109.47430 * 60.00400 * 1 2 3
29 29 H 1.09001 * 109.47267 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.46745 * 180.02562 * 3 2 1
31 31 H 1.09004 * 109.46692 * 299.99410 * 3 2 1
32 32 H 1.08999 * 109.47330 * 60.00007 * 3 2 1
33 33 H 1.08998 * 109.47542 * 300.00035 * 4 2 1
34 34 H 1.09004 * 109.47274 * 60.00174 * 4 2 1
35 35 H 1.08998 * 109.47145 * 179.97438 * 4 2 1
36 36 H 1.09002 * 110.36696 * 85.25946 * 9 8 6
37 37 H 1.08995 * 110.36608 * 323.04783 * 9 8 6
38 38 H 0.96999 * 120.00536 * 93.54386 * 12 10 9
39 39 H 0.96994 * 119.99662 * 180.02562 * 18 17 15
40 40 H 0.96693 * 114.00397 * 180.02562 * 25 23 10
41 41 H 1.09004 * 109.85762 * 59.50172 * 26 8 6
42 42 H 1.08995 * 110.00297 * 298.43119 * 26 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7214 -1.2491
5 8 2.0140 -0.6844 1.1857
6 6 1.6522 -1.9722 1.3385
7 8 0.9509 -2.5094 0.5042
8 7 2.0672 -2.6653 2.4173
9 6 1.7467 -4.0745 2.7088
10 6 1.8903 -4.2068 4.2455
11 1 0.9973 -3.8431 4.7542
12 7 2.1824 -5.5903 4.6284
13 6 1.1738 -6.4630 4.8230
14 8 0.0206 -6.1015 4.6811
15 6 1.4657 -7.8452 5.2062
16 1 2.4892 -8.1659 5.3325
17 6 0.4177 -8.7521 5.4079
18 7 -0.8207 -8.3642 5.2545
19 14 0.7902 -10.5163 5.8961
20 1 1.5279 -10.5280 7.1848
21 1 -0.4820 -11.2672 6.0477
22 1 1.6208 -11.1561 4.8445
23 6 3.1050 -3.2831 4.5256
24 1 3.0689 -2.8966 5.5442
25 8 4.3323 -3.9773 4.2935
26 6 2.9159 -2.1435 3.5022
27 1 -0.3634 0.5139 0.8900
28 1 -0.3634 0.5137 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6767 1.9563 -0.8901
32 1 1.6767 1.9564 0.8900
33 1 1.6767 -1.7490 -1.2491
34 1 1.6767 -0.2076 -2.1392
35 1 3.1299 -0.7210 -1.2493
36 1 2.4505 -4.7359 2.2036
37 1 0.7259 -4.3026 2.4021
38 1 3.1016 -5.8785 4.7418
39 1 -1.5464 -8.9923 5.3946
40 1 5.1225 -3.4439 4.4548
41 1 2.4266 -1.2943 3.9792
42 1 3.8836 -1.8382 3.1045
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001634214508.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:42:42
Heat of formation + Delta-G solvation = -190.787848 kcal
Electronic energy + Delta-G solvation = -25349.448939 eV
Core-core repulsion = 21521.681783 eV
Total energy + Delta-G solvation = -3827.767157 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.156 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.97498 -40.52922 -38.86383 -37.93601 -36.35120 -35.21433 -34.77235 -34.18678
-30.88062 -29.60808 -28.39348 -28.29291 -28.08332 -25.23212 -22.68414 -22.52425
-21.26240 -20.58881 -19.54484 -18.89000 -18.44094 -17.60797 -17.44650 -17.38556
-16.48591 -16.13407 -15.96694 -15.54143 -15.39217 -15.12452 -14.81902 -14.72534
-14.50436 -14.10170 -13.96830 -13.41384 -13.30823 -13.11868 -13.03379 -12.89930
-12.88502 -12.74747 -12.65072 -12.53836 -12.49213 -12.35708 -12.08663 -11.93158
-11.43199 -11.34014 -10.97547 -10.91189 -9.95003 -9.89251 -9.51765 -8.28704
-6.85073 0.91145 1.41336 1.44828 1.56487 1.65215 2.25401 2.46032
2.73435 2.96395 3.25751 3.42695 3.50916 3.73828 3.77943 3.79192
3.93195 4.04270 4.12472 4.42218 4.43782 4.53671 4.59187 4.62618
4.71192 4.74251 4.78551 4.81835 4.87545 4.90625 5.02245 5.14112
5.26504 5.32755 5.32997 5.41035 5.89600 6.18495 6.27596 6.33011
6.87552 6.97228 7.16776 7.56166 8.49027 8.67453
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.026099 B = 0.003289 C = 0.003067
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1072.584302 B = 8510.742451 C = 9128.475171
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.121 3.879
3 C -0.130 4.130
4 C -0.180 4.180
5 O -0.357 6.357
6 C 0.662 3.338
7 O -0.599 6.599
8 N -0.601 5.601
9 C 0.127 3.873
10 C 0.150 3.850
11 H 0.078 0.922
12 N -0.732 5.732
13 C 0.538 3.462
14 O -0.629 6.629
15 C -0.571 4.571
16 H 0.088 0.912
17 C 0.028 3.972
18 N -0.821 5.821
19 Si 0.998 3.002
20 H -0.251 1.251
21 H -0.276 1.276
22 H -0.256 1.256
23 C 0.106 3.894
24 H 0.116 0.884
25 O -0.563 6.563
26 C 0.080 3.920
27 H 0.062 0.938
28 H 0.095 0.905
29 H 0.051 0.949
30 H 0.073 0.927
31 H 0.104 0.896
32 H 0.071 0.929
33 H 0.052 0.948
34 H 0.094 0.906
35 H 0.065 0.935
36 H 0.063 0.937
37 H 0.040 0.960
38 H 0.404 0.596
39 H 0.274 0.726
40 H 0.405 0.595
41 H 0.099 0.901
42 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.303 18.888 -5.384 23.175
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C 0.085 3.915
3 C -0.187 4.187
4 C -0.237 4.237
5 O -0.271 6.271
6 C 0.417 3.583
7 O -0.490 6.490
8 N -0.342 5.342
9 C 0.003 3.997
10 C 0.042 3.958
11 H 0.096 0.904
12 N -0.386 5.386
13 C 0.343 3.657
14 O -0.516 6.516
15 C -0.608 4.608
16 H 0.106 0.894
17 C -0.187 4.187
18 N -0.451 5.451
19 Si 0.818 3.182
20 H -0.175 1.175
21 H -0.201 1.201
22 H -0.180 1.180
23 C 0.046 3.954
24 H 0.134 0.866
25 O -0.373 6.373
26 C -0.042 4.042
27 H 0.081 0.919
28 H 0.114 0.886
29 H 0.070 0.930
30 H 0.092 0.908
31 H 0.122 0.878
32 H 0.090 0.910
33 H 0.071 0.929
34 H 0.113 0.887
35 H 0.084 0.916
36 H 0.082 0.918
37 H 0.059 0.941
38 H 0.239 0.761
39 H 0.084 0.916
40 H 0.257 0.743
41 H 0.118 0.882
42 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 10.671 18.622 -5.995 22.284
hybrid contribution 0.182 -0.708 0.044 0.732
sum 10.853 17.914 -5.951 21.774
Atomic orbital electron populations
1.22494 0.94467 1.03194 1.03787 1.22513 0.94395 0.93130 0.81429
1.21864 1.02609 0.89744 1.04516 1.22474 1.01799 1.01845 0.97607
1.86301 1.71398 1.21892 1.47551 1.17655 0.78518 0.81029 0.81073
1.90906 1.42659 1.71403 1.44071 1.47099 1.53190 1.12166 1.21793
1.22456 0.99588 0.79847 0.97776 1.21710 0.97623 0.84878 0.91592
0.90355 1.45522 1.09785 1.08603 1.74737 1.18649 0.83633 0.86653
0.76797 1.90571 1.22603 1.79995 1.58467 1.21388 0.95105 0.94057
1.50219 0.89381 1.26983 0.93859 1.05589 0.92273 1.70184 1.00850
1.37509 1.36535 0.85062 0.78396 0.74826 0.79953 1.17531 1.20056
1.18048 1.22915 0.84234 0.89685 0.98559 0.86610 1.86466 1.15514
1.43263 1.92045 1.23121 0.96332 0.97495 0.87247 0.91851 0.88639
0.93039 0.90760 0.87752 0.90987 0.92941 0.88708 0.91560 0.91846
0.94120 0.76074 0.91596 0.74336 0.88240 0.87851
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.18 8.37 71.98 0.60 -3.58 16
2 C 0.12 2.63 1.13 -10.80 -0.01 2.62 16
3 C -0.13 -1.68 8.85 71.98 0.64 -1.04 16
4 C -0.18 -3.93 8.37 71.98 0.60 -3.33 16
5 O -0.36 -9.68 9.50 -55.44 -0.53 -10.21 16
6 C 0.66 22.79 7.93 129.79 1.03 23.82 16
7 O -0.60 -24.69 12.14 19.81 0.24 -24.45 16
8 N -0.60 -19.57 3.34 -941.42 -3.14 -22.71 16
9 C 0.13 5.12 6.59 86.85 0.57 5.69 16
10 C 0.15 5.70 3.20 46.38 0.15 5.85 16
11 H 0.08 3.35 7.73 -2.38 -0.02 3.33 16
12 N -0.73 -32.87 5.18 -440.24 -2.28 -35.15 16
13 C 0.54 31.33 7.75 86.36 0.67 32.00 16
14 O -0.63 -42.37 14.76 -4.30 -0.06 -42.44 16
15 C -0.57 -32.62 9.54 24.83 0.24 -32.38 16
16 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16
17 C 0.03 1.58 5.50 85.31 0.47 2.05 16
18 N -0.82 -50.97 11.83 21.84 0.26 -50.71 16
19 Si 1.00 41.39 29.56 68.60 2.03 43.42 16
20 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16
21 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16
22 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16
23 C 0.11 2.49 4.19 31.78 0.13 2.63 16
24 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16
25 O -0.56 -12.02 12.14 -148.98 -1.81 -13.83 16
26 C 0.08 1.73 6.68 86.68 0.58 2.31 16
27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16
28 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16
29 H 0.05 1.60 5.88 -2.39 -0.01 1.59 16
30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
31 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16
32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
33 H 0.05 1.56 5.88 -2.39 -0.01 1.55 16
34 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16
35 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16
36 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16
37 H 0.04 1.98 8.03 -2.39 -0.02 1.96 16
38 H 0.40 16.23 7.54 -92.71 -0.70 15.53 16
39 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16
40 H 0.40 3.80 9.12 -74.06 -0.68 3.13 16
41 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16
42 H 0.10 1.70 8.07 -2.39 -0.02 1.68 16
Total: -1.00 -85.56 347.67 0.05 -85.50
By element:
Atomic # 1 Polarization: 34.26 SS G_CDS: -0.32 Total: 33.93 kcal
Atomic # 6 Polarization: 30.97 SS G_CDS: 5.67 Total: 36.64 kcal
Atomic # 7 Polarization: -103.41 SS G_CDS: -5.16 Total: -108.57 kcal
Atomic # 8 Polarization: -88.76 SS G_CDS: -2.16 Total: -90.92 kcal
Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal
Total: -85.56 0.05 -85.50 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001634214508.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -105.284 kcal
(2) G-P(sol) polarization free energy of solvation -85.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.840 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.504 kcal
(6) G-S(sol) free energy of system = (1) + (5) -190.788 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds