Wall clock time and date at job start Tue Mar 31 2020 04:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.41596 * 114.00345 * 2 1 4 4 C 1.34771 * 120.00377 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00324 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99907 * 180.02562 * 4 3 2 7 7 N 1.46505 * 109.47123 * 179.97438 * 6 4 3 8 8 C 1.34773 * 120.00225 * 179.97438 * 7 6 4 9 9 O 1.21587 * 119.99684 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00300 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00360 * 180.02562 * 10 8 7 12 12 C 1.53071 * 109.44009 * 84.79625 * 11 10 8 13 13 C 1.53201 * 109.29371 * 181.23934 * 12 11 10 14 14 N 1.46928 * 108.89275 * 305.57634 * 13 12 11 15 15 C 1.36934 * 120.63265 * 233.51651 * 14 13 12 16 16 H 1.07997 * 119.99862 * 151.82898 * 15 14 13 17 17 C 1.38806 * 120.00015 * 331.83027 * 15 14 13 18 18 N 1.31624 * 120.00191 * 343.08772 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 163.08448 * 17 15 14 20 20 H 1.48503 * 109.47142 * 60.00161 * 19 17 15 21 21 H 1.48498 * 109.47084 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47267 * 300.00095 * 19 17 15 23 23 C 1.46932 * 118.73342 * 53.53882 * 14 13 12 24 24 C 1.53045 * 109.46092 * 205.00269 * 11 10 8 25 25 H 1.08995 * 109.47301 * 60.00255 * 1 2 3 26 26 H 1.09006 * 109.46980 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46955 * 299.99272 * 1 2 3 28 28 H 0.97001 * 119.99670 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47181 * 60.00413 * 6 4 3 30 30 H 1.08997 * 109.47315 * 299.99692 * 6 4 3 31 31 H 0.97005 * 119.99867 * 0.02562 * 7 6 4 32 32 H 0.97005 * 119.99791 * 0.02562 * 10 8 7 33 33 H 1.08998 * 109.45866 * 324.97703 * 11 10 8 34 34 H 1.09002 * 109.39343 * 61.36176 * 12 11 10 35 35 H 1.09003 * 109.62467 * 301.25403 * 12 11 10 36 36 H 1.09000 * 109.58250 * 185.72113 * 13 12 11 37 37 H 1.08995 * 109.58477 * 65.43833 * 13 12 11 38 38 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.59017 * 66.18099 * 23 14 13 40 40 H 1.09009 * 109.58200 * 186.46074 * 23 14 13 41 41 H 1.09002 * 109.49555 * 58.67538 * 24 11 10 42 42 H 1.08992 * 109.52043 * 298.59539 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 3.3453 1.4344 -0.0005 5 8 4.0583 0.4533 -0.0015 6 6 3.9583 2.8111 0.0001 7 7 5.4187 2.6955 -0.0001 8 6 6.1827 3.8058 -0.0001 9 8 5.6597 4.9035 0.0004 10 7 7.5262 3.6994 -0.0008 11 6 8.3566 4.9063 -0.0003 12 6 8.5381 5.3992 1.4375 13 6 9.3810 6.6785 1.4314 14 7 10.6380 6.4167 0.7172 15 6 11.8443 6.6890 1.3051 16 1 12.7200 6.1203 1.0293 17 6 11.9417 7.6960 2.2555 18 7 10.9897 8.5993 2.3571 19 14 13.4236 7.7693 3.3903 20 1 14.6598 7.9191 2.5811 21 1 13.2881 8.9295 4.3072 22 1 13.5010 6.5173 4.1850 23 6 10.5759 5.8575 -0.6402 24 6 9.7228 4.5855 -0.6110 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.4349 2.0783 0.0004 29 1 3.6371 3.3515 0.8906 30 1 3.6363 3.3526 -0.8894 31 1 5.8359 1.8197 -0.0008 32 1 7.9434 2.8237 -0.0015 33 1 7.8688 5.6829 -0.5893 34 1 9.0459 4.6318 2.0218 35 1 7.5635 5.6078 1.8788 36 1 9.5988 6.9774 2.4568 37 1 8.8332 7.4746 0.9273 38 1 11.0578 9.3032 3.0210 39 1 10.1244 6.5849 -1.3148 40 1 11.5824 5.6172 -0.9827 41 1 9.5889 4.2137 -1.6268 42 1 10.2218 3.8264 -0.0086 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001684057148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:04 Heat of formation + Delta-G solvation = -60.418380 kcal Electronic energy + Delta-G solvation = -24206.555866 eV Core-core repulsion = 20416.734705 eV Total energy + Delta-G solvation = -3789.821161 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41727 -40.52307 -39.05228 -38.24866 -36.04021 -35.42903 -33.92815 -33.54715 -31.72389 -31.20894 -28.78609 -27.26005 -26.56679 -23.88421 -23.71542 -22.17995 -21.77478 -21.03137 -19.82964 -19.22263 -18.68510 -17.69948 -17.49924 -17.17154 -16.76518 -16.35317 -15.97179 -15.80090 -15.55805 -15.32013 -15.28953 -15.06121 -14.71185 -14.39579 -14.35456 -13.97403 -13.67535 -13.16042 -13.05201 -12.97096 -12.62383 -12.54250 -12.24734 -12.09832 -12.04699 -11.82796 -11.50518 -11.44593 -11.29000 -11.20598 -10.55185 -10.38056 -10.06199 -9.76588 -8.67913 -7.84790 -5.30860 0.68186 1.37013 1.49025 1.51844 1.58401 1.75951 2.15756 2.53790 3.24099 3.26703 3.33845 3.70994 3.73732 3.92367 4.13773 4.32713 4.34035 4.36427 4.39001 4.42257 4.52173 4.71494 4.74519 4.84043 4.90502 5.08269 5.12904 5.17159 5.28214 5.36343 5.49779 5.62220 5.63203 5.66825 5.73679 5.98547 6.14456 6.41568 7.05311 7.09907 7.16436 7.57540 7.87582 8.40152 9.22025 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.039286 B = 0.002332 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.560071 B =12005.582458 C =12167.808204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.179 6.179 3 N -0.582 5.582 4 C 0.526 3.474 5 O -0.564 6.564 6 C 0.136 3.864 7 N -0.731 5.731 8 C 0.707 3.293 9 O -0.628 6.628 10 N -0.725 5.725 11 C 0.181 3.819 12 C -0.131 4.131 13 C 0.182 3.818 14 N -0.610 5.610 15 C -0.261 4.261 16 H 0.072 0.928 17 C -0.055 4.055 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.273 1.273 21 H -0.297 1.297 22 H -0.278 1.278 23 C 0.142 3.858 24 C -0.122 4.122 25 H 0.073 0.927 26 H 0.126 0.874 27 H 0.072 0.928 28 H 0.430 0.570 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.413 0.587 32 H 0.410 0.590 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.054 0.946 37 H -0.008 1.008 38 H 0.249 0.751 39 H 0.014 0.986 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.640 -16.569 -6.274 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 O -0.183 6.183 3 N -0.287 5.287 4 C 0.313 3.687 5 O -0.441 6.441 6 C 0.008 3.992 7 N -0.391 5.391 8 C 0.407 3.593 9 O -0.509 6.509 10 N -0.380 5.380 11 C 0.076 3.924 12 C -0.172 4.172 13 C 0.056 3.944 14 N -0.333 5.333 15 C -0.392 4.392 16 H 0.090 0.910 17 C -0.250 4.250 18 N -0.584 5.584 19 Si 0.797 3.203 20 H -0.199 1.199 21 H -0.223 1.223 22 H -0.204 1.204 23 C 0.016 3.984 24 C -0.162 4.162 25 H 0.091 0.909 26 H 0.144 0.856 27 H 0.090 0.910 28 H 0.274 0.726 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.251 0.749 32 H 0.246 0.754 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.010 0.990 38 H 0.058 0.942 39 H 0.032 0.968 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.538 -16.344 -6.192 26.968 hybrid contribution 0.308 0.120 0.807 0.872 sum -20.229 -16.224 -5.385 26.485 Atomic orbital electron populations 1.23610 0.77722 1.06128 1.02900 1.90588 1.23170 1.07076 1.97449 1.47296 1.05228 0.99705 1.76441 1.20827 0.80676 0.91645 0.75554 1.90721 1.61259 1.41244 1.50917 1.20802 0.80037 0.91412 1.06950 1.44638 1.05521 1.08452 1.80502 1.15902 0.82000 0.83873 0.77551 1.90921 1.73410 1.26883 1.59651 1.45124 1.03651 1.10380 1.78824 1.20543 0.90419 0.85775 0.95642 1.22341 0.98693 0.98967 0.97157 1.20474 0.85065 0.91902 0.96983 1.44344 1.02113 1.74259 1.12597 1.19518 0.88688 1.11722 1.19227 0.91001 1.25868 1.00641 0.95110 1.03375 1.70197 1.36528 1.15050 1.36577 0.85318 0.79529 0.76699 0.78752 1.19882 1.22349 1.20382 1.21044 0.98536 0.92952 0.85900 1.22143 0.93532 0.99006 1.01492 0.90862 0.85647 0.90978 0.72583 0.86538 0.86154 0.74937 0.75418 0.92055 0.92390 0.93348 0.92773 0.99019 0.94179 0.96795 0.91481 0.89054 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.04 11.30 113.37 1.28 1.24 16 2 O -0.18 -2.84 11.47 -21.38 -0.25 -3.08 16 3 N -0.58 -7.23 6.39 -173.54 -1.11 -8.34 16 4 C 0.53 9.43 8.04 87.66 0.71 10.14 16 5 O -0.56 -15.19 16.07 14.37 0.23 -14.96 16 6 C 0.14 2.14 6.15 85.63 0.53 2.66 16 7 N -0.73 -15.52 5.53 -482.30 -2.67 -18.19 16 8 C 0.71 20.17 8.53 179.06 1.53 21.70 16 9 O -0.63 -22.96 16.01 -3.99 -0.06 -23.02 16 10 N -0.73 -19.43 5.08 -457.64 -2.33 -21.76 16 11 C 0.18 6.16 2.41 45.03 0.11 6.27 16 12 C -0.13 -5.30 5.66 30.69 0.17 -5.13 16 13 C 0.18 9.23 5.30 86.37 0.46 9.69 16 14 N -0.61 -30.80 3.00 -699.07 -2.09 -32.89 16 15 C -0.26 -14.37 9.58 84.03 0.81 -13.56 16 16 H 0.07 3.77 7.88 -2.91 -0.02 3.75 16 17 C -0.05 -3.10 4.92 84.86 0.42 -2.68 16 18 N -0.94 -56.77 11.20 21.65 0.24 -56.53 16 19 Si 0.97 45.21 29.59 68.60 2.03 47.24 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 C 0.14 5.70 6.52 86.36 0.56 6.26 16 24 C -0.12 -3.78 5.55 30.67 0.17 -3.61 16 25 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.13 0.31 8.14 -2.38 -0.02 0.29 16 27 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.43 1.64 8.54 -92.71 -0.79 0.85 16 29 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.41 8.15 7.45 -92.70 -0.69 7.46 16 32 H 0.41 8.38 8.62 -92.70 -0.80 7.58 16 33 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.05 3.09 6.06 -2.39 -0.01 3.08 16 37 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 39 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 2.56 7.93 -2.38 -0.02 2.54 16 41 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -80.89 351.55 -0.49 -81.38 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -1.22 Total: 17.17 kcal Atomic # 6 Polarization: 26.24 SS G_CDS: 6.74 Total: 32.98 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -7.95 Total: -137.71 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.08 Total: -41.06 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -80.89 -0.49 -81.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684057148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.957 kcal (2) G-P(sol) polarization free energy of solvation -80.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds