Wall clock time and date at job start Tue Mar 31 2020 04:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86797 * 120.00464 * 2 1 4 4 H 1.48499 * 109.47555 * 239.99840 * 3 2 1 5 5 H 1.48504 * 109.47214 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47298 * 120.00052 * 3 2 1 7 7 C 1.38816 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00106 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99892 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00178 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47295 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.47235 * 305.00138 * 11 10 9 13 13 O 1.42902 * 109.46992 * 64.99809 * 11 10 9 14 14 C 1.53001 * 109.47149 * 184.99974 * 11 10 9 15 15 N 1.46501 * 109.46986 * 180.02562 * 14 11 10 16 16 C 1.34766 * 120.00014 * 180.02562 * 15 14 11 17 17 O 1.21281 * 120.00078 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00402 * 180.02562 * 16 15 14 19 19 O 1.42896 * 109.47766 * 179.97438 * 18 16 15 20 20 C 1.42896 * 114.00446 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.46906 * 89.99887 * 20 19 18 22 22 C 1.52999 * 109.47317 * 179.97438 * 21 20 19 23 23 C 1.53005 * 109.47159 * 300.00546 * 22 21 20 24 24 C 1.52997 * 109.47452 * 59.99536 * 23 22 21 25 25 C 1.53000 * 109.47231 * 209.99746 * 20 19 18 26 26 H 0.97005 * 119.99648 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99813 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.47101 * 59.99665 * 10 9 7 29 29 H 1.09000 * 109.47272 * 300.00043 * 10 9 7 30 30 H 0.96705 * 113.99302 * 60.00035 * 13 11 10 31 31 H 1.08997 * 109.46932 * 60.00230 * 14 11 10 32 32 H 1.09000 * 109.47185 * 300.00194 * 14 11 10 33 33 H 0.97006 * 119.99906 * 359.97438 * 15 14 11 34 34 H 1.08999 * 109.47429 * 59.99113 * 18 16 15 35 35 H 1.09000 * 109.46801 * 299.99642 * 18 16 15 36 36 H 1.09002 * 109.46984 * 330.00066 * 20 19 18 37 37 H 1.08996 * 109.47853 * 300.00254 * 21 20 19 38 38 H 1.09002 * 109.47153 * 60.00282 * 21 20 19 39 39 H 1.09000 * 109.47486 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.46716 * 60.00091 * 22 21 20 41 41 H 1.09002 * 109.46935 * 299.99411 * 23 22 21 42 42 H 1.09001 * 109.46812 * 179.97438 * 23 22 21 43 43 H 1.08993 * 109.47194 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.46695 * 59.99734 * 24 23 22 45 45 H 1.08992 * 109.47399 * 300.00058 * 25 20 19 46 46 H 1.09004 * 109.46724 * 60.00544 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8198 0.0012 12 1 0.3797 -4.7127 0.8432 13 8 0.3207 -4.8120 -1.2196 14 6 1.8244 -6.1412 0.1269 15 7 0.8723 -7.2547 0.1269 16 6 1.3181 -8.5224 0.2291 17 8 2.5074 -8.7415 0.3207 18 6 0.3388 -9.6679 0.2286 19 8 1.0493 -10.9021 0.3461 20 6 0.2091 -12.0579 0.3560 21 6 0.0048 -12.5521 -1.0775 22 6 -0.8943 -13.7900 -1.0669 23 6 -0.2345 -14.8926 -0.2364 24 6 -0.0302 -14.3984 1.1971 25 6 0.8684 -13.1608 1.1866 26 1 -0.4850 0.8401 0.0004 27 1 0.3554 -2.3880 0.0005 28 1 2.6845 -3.7147 0.8905 29 1 2.6845 -3.7147 -0.8894 30 1 0.8665 -4.9036 -2.0126 31 1 2.3909 -6.1471 1.0581 32 1 2.5082 -6.2483 -0.7151 33 1 -0.0790 -7.0795 0.0541 34 1 -0.2268 -9.6620 -0.7032 35 1 -0.3459 -9.5609 1.0699 36 1 -0.7561 -11.8017 0.7930 37 1 -0.4649 -11.7666 -1.6693 38 1 0.9699 -12.8084 -1.5145 39 1 -1.0395 -14.1424 -2.0881 40 1 -1.8595 -13.5342 -0.6298 41 1 0.7307 -15.1484 -0.6735 42 1 -0.8753 -15.7743 -0.2285 43 1 0.4394 -15.1840 1.7888 44 1 -0.9954 -14.1426 1.6342 45 1 1.8335 -13.4170 0.7496 46 1 1.0139 -12.8086 2.2079 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699047962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:14 Heat of formation + Delta-G solvation = -171.790284 kcal Electronic energy + Delta-G solvation = -23925.399690 eV Core-core repulsion = 20234.289424 eV Total energy + Delta-G solvation = -3691.110266 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00005 -39.95425 -38.90920 -37.23476 -36.08536 -35.30134 -33.21892 -31.74073 -31.40412 -30.55936 -28.66209 -26.62436 -24.34340 -23.51901 -23.10033 -22.77434 -21.61552 -20.74860 -19.26076 -18.47875 -18.17073 -17.36739 -17.22905 -16.74510 -16.68011 -16.41454 -15.89659 -15.48635 -15.43940 -15.19396 -14.92425 -14.75205 -14.59383 -14.17477 -14.02054 -13.76689 -13.57591 -13.30840 -13.13963 -13.01281 -12.95847 -12.72068 -12.20567 -12.06274 -11.99220 -11.97485 -11.81194 -11.50702 -11.47200 -11.24610 -11.15171 -10.97283 -10.78107 -10.43177 -10.17108 -9.01617 -7.95264 -5.24737 1.47737 1.50696 1.53903 1.56892 1.75674 2.55420 2.91924 3.35893 3.48089 3.58228 3.69690 3.78674 3.84553 4.00903 4.07269 4.16125 4.20925 4.22976 4.28942 4.34523 4.36652 4.40881 4.56495 4.58426 4.61167 4.68027 4.71426 4.93541 4.95069 5.04133 5.12634 5.20671 5.23118 5.24007 5.31046 5.31941 5.39327 5.47806 5.51319 6.14689 6.25876 6.51958 6.79126 7.18671 7.33131 8.08138 8.31564 9.27628 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.053113 B = 0.001885 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.054224 B =14851.767954 C =15076.142488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.076 0.924 9 N -0.739 5.739 10 C 0.121 3.879 11 C 0.110 3.890 12 H 0.103 0.897 13 O -0.561 6.561 14 C 0.103 3.897 15 N -0.707 5.707 16 C 0.508 3.492 17 O -0.577 6.577 18 C 0.047 3.953 19 O -0.391 6.391 20 C 0.085 3.915 21 C -0.142 4.142 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.118 4.118 26 H 0.252 0.748 27 H 0.377 0.623 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.385 0.615 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.418 0.582 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.682 -30.806 -0.248 31.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.094 0.906 9 N -0.382 5.382 10 C -0.006 4.006 11 C 0.050 3.950 12 H 0.121 0.879 13 O -0.368 6.368 14 C -0.022 4.022 15 N -0.362 5.362 16 C 0.295 3.705 17 O -0.456 6.456 18 C -0.032 4.032 19 O -0.310 6.310 20 C 0.028 3.972 21 C -0.179 4.179 22 C -0.152 4.152 23 C -0.161 4.161 24 C -0.149 4.149 25 C -0.156 4.156 26 H 0.060 0.940 27 H 0.209 0.791 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.234 0.766 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.255 0.745 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.977 -30.811 0.236 31.067 hybrid contribution 0.189 1.322 -0.426 1.402 sum -3.789 -29.489 -0.190 29.732 Atomic orbital electron populations 1.69821 1.06610 1.26194 1.59085 1.25592 0.96420 1.01175 1.03491 0.85194 0.77184 0.79055 0.78187 1.20392 1.22077 1.20389 1.19613 0.91523 0.85401 1.41792 0.90648 1.42396 1.05723 1.00700 1.89401 1.21414 0.94294 0.85815 0.99088 1.22074 0.93479 0.91080 0.88342 0.87904 1.86552 1.38079 1.96193 1.15973 1.21838 0.92071 0.85214 1.03097 1.45659 1.11721 1.04550 1.74223 1.20908 0.89451 0.84541 0.75568 1.90713 1.19207 1.85214 1.50454 1.22334 0.92948 0.82972 1.04955 1.88016 1.34680 1.13474 1.94830 1.22379 0.93937 0.84763 0.96134 1.22046 1.00575 0.98835 0.96493 1.21496 0.98596 0.94186 1.00874 1.21602 1.01022 0.98397 0.95117 1.21485 0.99877 0.96146 0.97412 1.21597 0.99518 0.94765 0.99678 0.93955 0.79079 0.94946 0.95187 0.76577 0.90797 0.91046 0.74452 0.87703 0.87400 0.90142 0.91370 0.92641 0.91074 0.90816 0.92502 0.90544 0.90759 0.90803 0.92554 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 2 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 8 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -37.08 5.55 -343.45 -1.91 -38.98 16 10 C 0.12 4.56 5.90 86.38 0.51 5.07 16 11 C 0.11 3.17 3.09 30.59 0.09 3.27 16 12 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 13 O -0.56 -16.27 13.03 -148.98 -1.94 -18.21 16 14 C 0.10 2.55 5.34 86.38 0.46 3.02 16 15 N -0.71 -14.91 5.45 -463.07 -2.52 -17.43 16 16 C 0.51 12.57 7.91 87.66 0.69 13.26 16 17 O -0.58 -20.33 16.50 16.00 0.26 -20.07 16 18 C 0.05 0.79 6.23 71.24 0.44 1.24 16 19 O -0.39 -8.67 9.52 -129.94 -1.24 -9.91 16 20 C 0.08 1.27 2.61 30.59 0.08 1.35 16 21 C -0.14 -1.87 5.54 30.59 0.17 -1.70 16 22 C -0.11 -1.04 5.92 30.60 0.18 -0.86 16 23 C -0.12 -1.11 5.92 30.60 0.18 -0.93 16 24 C -0.11 -1.06 5.92 30.58 0.18 -0.88 16 25 C -0.12 -1.71 5.57 30.58 0.17 -1.53 16 26 H 0.25 14.96 8.31 -92.70 -0.77 14.19 16 27 H 0.38 20.37 7.67 -92.71 -0.71 19.66 16 28 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.39 9.13 9.05 -74.05 -0.67 8.46 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.42 6.81 8.35 -92.70 -0.77 6.03 16 34 H 0.11 1.22 7.87 -2.39 -0.02 1.20 16 35 H 0.11 1.19 8.08 -2.39 -0.02 1.18 16 36 H 0.08 0.87 7.79 -2.39 -0.02 0.86 16 37 H 0.07 0.83 7.87 -2.39 -0.02 0.81 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -75.05 376.21 -1.74 -76.78 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: -1.17 Total: 34.42 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 4.47 Total: 4.28 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -4.15 Total: -115.39 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -2.91 Total: -48.19 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -75.05 -1.74 -76.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699047962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.009 kcal (2) G-P(sol) polarization free energy of solvation -75.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds