Wall clock time and date at job start Tue Mar 31 2020 04:17:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86804 * 120.00246 * 2 1
4 4 H 1.48498 * 109.46716 * 179.97438 * 3 2 1
5 5 H 1.48491 * 109.46976 * 300.00033 * 3 2 1
6 6 H 1.48493 * 109.46850 * 59.99854 * 3 2 1
7 7 C 1.38816 * 119.99887 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00143 * 196.91553 * 7 2 1
9 9 N 1.36942 * 120.00050 * 16.91177 * 7 2 1
10 10 C 1.47145 * 120.98170 * 206.22803 * 9 7 2
11 11 C 1.53301 * 108.38286 * 230.55744 * 10 9 7
12 12 O 1.42965 * 109.22131 * 307.69413 * 11 10 9
13 13 C 1.42967 * 114.16487 * 62.58264 * 12 11 10
14 14 H 1.08996 * 109.51103 * 57.38884 * 13 12 11
15 15 C 1.53000 * 109.51172 * 177.49582 * 13 12 11
16 16 N 1.46497 * 109.46962 * 299.99834 * 15 13 12
17 17 C 1.34780 * 119.99711 * 180.02562 * 16 15 13
18 18 O 1.21277 * 120.00080 * 0.02562 * 17 16 15
19 19 C 1.50706 * 119.99809 * 179.97438 * 17 16 15
20 20 C 1.53000 * 109.47059 * 179.97438 * 19 17 16
21 21 N 1.46497 * 109.46962 * 180.02562 * 20 19 17
22 22 C 1.34780 * 119.99711 * 180.02562 * 21 20 19
23 23 N 1.34780 * 119.99522 * 180.02562 * 22 21 20
24 24 O 1.21583 * 120.00210 * 0.02562 * 22 21 20
25 25 C 1.47157 * 120.97866 * 26.24790 * 9 7 2
26 26 H 0.96997 * 120.00144 * 0.02562 * 1 2 3
27 27 H 1.08995 * 109.68687 * 110.83444 * 10 9 7
28 28 H 1.09002 * 109.68134 * 350.27661 * 10 9 7
29 29 H 1.09004 * 109.51226 * 187.77697 * 11 10 9
30 30 H 1.08990 * 109.51388 * 67.61743 * 11 10 9
31 31 H 1.08998 * 109.46978 * 59.99933 * 15 13 12
32 32 H 1.08996 * 109.46884 * 180.02562 * 15 13 12
33 33 H 0.96998 * 120.00230 * 0.02562 * 16 15 13
34 34 H 1.09001 * 109.47142 * 300.00525 * 19 17 16
35 35 H 1.09006 * 109.47061 * 60.00095 * 19 17 16
36 36 H 1.08998 * 109.46978 * 300.00137 * 20 19 17
37 37 H 1.08996 * 109.46884 * 60.00381 * 20 19 17
38 38 H 0.96998 * 120.00230 * 0.02562 * 21 20 19
39 39 H 0.96998 * 120.00419 * 359.97438 * 23 22 21
40 40 H 0.97002 * 119.99488 * 180.02562 * 23 22 21
41 41 H 1.08993 * 109.68101 * 9.71603 * 25 9 7
42 42 H 1.09005 * 109.67420 * 249.16285 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7102 1.3462 0.0006
5 1 1.8915 2.3964 -1.2124
6 1 1.8915 2.3964 1.2124
7 6 2.0102 -1.2022 -0.0005
8 1 3.0552 -1.2226 0.2716
9 7 1.3699 -2.3623 -0.3460
10 6 1.8341 -3.6635 0.1606
11 6 1.9821 -4.6202 -1.0281
12 8 0.7660 -4.6288 -1.7796
13 6 0.4252 -3.3655 -2.3559
14 1 1.2383 -3.0271 -2.9980
15 6 -0.8536 -3.5096 -3.1834
16 7 -0.6369 -4.4899 -4.2503
17 6 -1.6329 -4.7809 -5.1105
18 8 -2.7082 -4.2309 -5.0016
19 6 -1.4098 -5.7890 -6.2084
20 6 -2.6886 -5.9332 -7.0358
21 7 -2.4719 -6.9135 -8.1027
22 6 -3.4679 -7.2046 -8.9628
23 7 -3.2687 -8.1069 -9.9440
24 8 -4.5461 -6.6533 -8.8536
25 6 0.1976 -2.3445 -1.2353
26 1 -0.4850 0.8400 -0.0004
27 1 1.1059 -4.0640 0.8657
28 1 2.7974 -3.5421 0.6561
29 1 2.1911 -5.6256 -0.6624
30 1 2.8012 -4.2859 -1.6647
31 1 -1.6666 -3.8463 -2.5402
32 1 -1.1124 -2.5463 -3.6228
33 1 0.2233 -4.9296 -4.3376
34 1 -0.5965 -5.4521 -6.8512
35 1 -1.1507 -6.7527 -5.7697
36 1 -3.5014 -6.2703 -6.3927
37 1 -2.9480 -4.9697 -7.4745
38 1 -1.6117 -7.3531 -8.1900
39 1 -2.4085 -8.5465 -10.0313
40 1 -3.9854 -8.3161 -10.5632
41 1 0.0770 -1.3497 -1.6639
42 1 -0.6955 -2.6123 -0.6706
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001753658408.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:17:18
Heat of formation + Delta-G solvation = -93.990249 kcal
Electronic energy + Delta-G solvation = -24169.188705 eV
Core-core repulsion = 20377.911758 eV
Total energy + Delta-G solvation = -3791.276947 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.163 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.17944 -39.58020 -38.47170 -35.44126 -34.80450 -34.33868 -33.93821 -31.57714
-31.23067 -30.33146 -27.43069 -25.77900 -23.86044 -23.28473 -21.67523 -21.44166
-20.48145 -19.61717 -18.59745 -17.60478 -17.11574 -16.84425 -16.32527 -15.94332
-15.62112 -15.21442 -15.06508 -14.85466 -14.38498 -14.32187 -13.99508 -13.77516
-13.55335 -13.28685 -12.88696 -12.81679 -12.27949 -12.13650 -11.70084 -11.54565
-11.14380 -10.89426 -10.76082 -10.60671 -10.46244 -10.28429 -10.08955 -10.02364
-9.84749 -9.69240 -9.30619 -9.12997 -8.89995 -8.59358 -6.80315 -5.88513
-3.32511 2.50646 2.67627 2.95512 3.30412 3.34750 3.39511 3.41335
4.15430 4.21979 4.40295 4.48598 4.80973 4.84512 5.14973 5.18573
5.31787 5.50169 5.57870 5.67005 5.76389 5.81184 5.88155 5.98282
6.07201 6.14072 6.19850 6.32546 6.37786 6.45341 6.58173 6.61315
6.73597 7.02236 7.43663 7.58080 7.64133 7.67169 7.78487 8.27674
8.29265 8.34343 9.06560 9.69536 10.26291 11.19584
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.027184 B = 0.002470 C = 0.002342
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1029.787224 B =11332.720403 C =11955.044235
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.901 5.901
2 C 0.003 3.997
3 Si 0.905 3.095
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.289 1.289
7 C -0.257 4.257
8 H 0.069 0.931
9 N -0.594 5.594
10 C 0.108 3.892
11 C 0.051 3.949
12 O -0.391 6.391
13 C 0.055 3.945
14 H 0.056 0.944
15 C 0.132 3.868
16 N -0.718 5.718
17 C 0.513 3.487
18 O -0.539 6.539
19 C -0.153 4.153
20 C 0.151 3.849
21 N -0.746 5.746
22 C 0.704 3.296
23 N -0.869 5.869
24 O -0.590 6.590
25 C 0.152 3.848
26 H 0.256 0.744
27 H 0.027 0.973
28 H 0.062 0.938
29 H 0.082 0.918
30 H 0.043 0.957
31 H 0.075 0.925
32 H 0.083 0.917
33 H 0.402 0.598
34 H 0.099 0.901
35 H 0.099 0.901
36 H 0.077 0.923
37 H 0.077 0.923
38 H 0.395 0.605
39 H 0.396 0.604
40 H 0.414 0.586
41 H 0.096 0.904
42 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.363 -16.665 -15.903 23.156
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.545 5.545
2 C -0.196 4.196
3 Si 0.734 3.266
4 H -0.202 1.202
5 H -0.214 1.214
6 H -0.216 1.216
7 C -0.386 4.386
8 H 0.087 0.913
9 N -0.318 5.318
10 C -0.018 4.018
11 C -0.028 4.028
12 O -0.310 6.310
13 C -0.004 4.004
14 H 0.074 0.926
15 C 0.008 3.992
16 N -0.370 5.370
17 C 0.298 3.702
18 O -0.416 6.416
19 C -0.193 4.193
20 C 0.027 3.973
21 N -0.403 5.403
22 C 0.401 3.599
23 N -0.438 5.438
24 O -0.467 6.467
25 C 0.025 3.975
26 H 0.066 0.934
27 H 0.045 0.955
28 H 0.080 0.920
29 H 0.100 0.900
30 H 0.061 0.939
31 H 0.093 0.907
32 H 0.101 0.899
33 H 0.236 0.764
34 H 0.117 0.883
35 H 0.118 0.882
36 H 0.095 0.905
37 H 0.095 0.905
38 H 0.229 0.771
39 H 0.223 0.777
40 H 0.246 0.754
41 H 0.114 0.886
42 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges 0.503 -15.671 -15.547 22.080
hybrid contribution 1.673 0.330 -0.206 1.718
sum 2.176 -15.340 -15.753 22.096
Atomic orbital electron populations
1.70023 1.05254 1.25735 1.53472 1.25073 0.95366 0.98549 1.00651
0.86190 0.79258 0.83702 0.77424 1.20238 1.21404 1.21592 1.19226
0.92657 0.84464 1.42294 0.91291 1.44058 1.33743 1.01367 1.52658
1.21603 0.98631 0.87576 0.93978 1.23004 0.86144 0.99598 0.94013
1.87771 1.42210 1.31551 1.69474 1.23151 0.94992 0.86442 0.95840
0.92624 1.21439 0.97736 0.92379 0.87650 1.45958 1.15597 1.44149
1.31251 1.20236 0.84328 0.83031 0.82638 1.90761 1.25056 1.52628
1.73196 1.21791 0.99887 1.00383 0.97252 1.20910 0.96404 0.92428
0.87552 1.45082 1.14993 1.47004 1.33233 1.15950 0.84138 0.80095
0.79668 1.42993 1.19093 1.46818 1.34882 1.91011 1.24887 1.55643
1.75168 1.21317 0.89498 0.97657 0.89019 0.93393 0.95547 0.91972
0.90027 0.93875 0.90655 0.89913 0.76368 0.88294 0.88221 0.90457
0.90459 0.77118 0.77667 0.75380 0.88552 0.95027
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.64 11.14 55.49 0.62 -25.02 16
2 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16
3 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16
4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
7 C -0.26 -6.86 9.65 -15.06 -0.15 -7.00 16
8 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16
9 N -0.59 -14.52 3.05 -171.82 -0.52 -15.04 16
10 C 0.11 2.19 6.73 -3.53 -0.02 2.17 16
11 C 0.05 0.84 6.99 37.31 0.26 1.10 16
12 O -0.39 -6.88 10.13 -35.23 -0.36 -7.23 16
13 C 0.06 1.00 2.87 -26.58 -0.08 0.92 16
14 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
15 C 0.13 2.14 5.37 -4.04 -0.02 2.12 16
16 N -0.72 -9.24 5.45 -60.30 -0.33 -9.57 16
17 C 0.51 6.67 7.83 -10.98 -0.09 6.58 16
18 O -0.54 -9.48 15.98 5.56 0.09 -9.39 16
19 C -0.15 -1.21 5.81 -27.88 -0.16 -1.37 16
20 C 0.15 1.55 4.96 -4.04 -0.02 1.53 16
21 N -0.75 -5.68 5.56 -65.23 -0.36 -6.04 16
22 C 0.70 7.11 8.84 -86.91 -0.77 6.34 16
23 N -0.87 -4.50 8.88 27.64 0.25 -4.26 16
24 O -0.59 -9.25 17.18 5.29 0.09 -9.15 16
25 C 0.15 3.50 4.73 -3.53 -0.02 3.48 16
26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
27 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16
28 H 0.06 1.19 7.96 -51.93 -0.41 0.77 16
29 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16
30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16
32 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16
33 H 0.40 4.22 8.35 -40.82 -0.34 3.88 16
34 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16
35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16
36 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16
37 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16
38 H 0.40 1.50 8.49 -40.82 -0.35 1.15 16
39 H 0.40 0.67 8.84 -40.82 -0.36 0.31 16
40 H 0.41 1.86 8.93 -40.82 -0.36 1.50 16
41 H 0.10 2.46 6.14 -51.93 -0.32 2.14 16
42 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
LS Contribution 351.38 15.07 5.30 5.30
Total: -1.00 -36.27 351.38 -7.75 -44.02
By element:
Atomic # 1 Polarization: 10.74 SS G_CDS: -6.34 Total: 4.40 kcal
Atomic # 6 Polarization: 17.00 SS G_CDS: -1.15 Total: 15.85 kcal
Atomic # 7 Polarization: -59.57 SS G_CDS: -0.35 Total: -59.93 kcal
Atomic # 8 Polarization: -25.60 SS G_CDS: -0.18 Total: -25.78 kcal
Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -36.27 -7.75 -44.02 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753658408.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.969 kcal
(2) G-P(sol) polarization free energy of solvation -36.274 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.242 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.022 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.990 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds