Wall clock time and date at job start Tue Mar 31 2020 04:17:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86804 * 120.00246 * 2 1
4 4 H 1.48498 * 109.46716 * 179.97438 * 3 2 1
5 5 H 1.48491 * 109.46976 * 300.00033 * 3 2 1
6 6 H 1.48493 * 109.46850 * 59.99854 * 3 2 1
7 7 C 1.38816 * 119.99887 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00143 * 196.91553 * 7 2 1
9 9 N 1.36942 * 120.00050 * 16.91177 * 7 2 1
10 10 C 1.47145 * 120.98170 * 206.22803 * 9 7 2
11 11 C 1.53301 * 108.38286 * 230.55744 * 10 9 7
12 12 O 1.42965 * 109.22131 * 307.69413 * 11 10 9
13 13 C 1.42967 * 114.16487 * 62.58264 * 12 11 10
14 14 H 1.08996 * 109.51103 * 57.38884 * 13 12 11
15 15 C 1.53000 * 109.51172 * 177.49582 * 13 12 11
16 16 N 1.46497 * 109.46962 * 299.99834 * 15 13 12
17 17 C 1.34780 * 119.99711 * 180.02562 * 16 15 13
18 18 O 1.21277 * 120.00080 * 0.02562 * 17 16 15
19 19 C 1.50706 * 119.99809 * 179.97438 * 17 16 15
20 20 C 1.53000 * 109.47059 * 179.97438 * 19 17 16
21 21 N 1.46497 * 109.46962 * 180.02562 * 20 19 17
22 22 C 1.34780 * 119.99711 * 180.02562 * 21 20 19
23 23 N 1.34780 * 119.99522 * 180.02562 * 22 21 20
24 24 O 1.21583 * 120.00210 * 0.02562 * 22 21 20
25 25 C 1.47157 * 120.97866 * 26.24790 * 9 7 2
26 26 H 0.96997 * 120.00144 * 0.02562 * 1 2 3
27 27 H 1.08995 * 109.68687 * 110.83444 * 10 9 7
28 28 H 1.09002 * 109.68134 * 350.27661 * 10 9 7
29 29 H 1.09004 * 109.51226 * 187.77697 * 11 10 9
30 30 H 1.08990 * 109.51388 * 67.61743 * 11 10 9
31 31 H 1.08998 * 109.46978 * 59.99933 * 15 13 12
32 32 H 1.08996 * 109.46884 * 180.02562 * 15 13 12
33 33 H 0.96998 * 120.00230 * 0.02562 * 16 15 13
34 34 H 1.09001 * 109.47142 * 300.00525 * 19 17 16
35 35 H 1.09006 * 109.47061 * 60.00095 * 19 17 16
36 36 H 1.08998 * 109.46978 * 300.00137 * 20 19 17
37 37 H 1.08996 * 109.46884 * 60.00381 * 20 19 17
38 38 H 0.96998 * 120.00230 * 0.02562 * 21 20 19
39 39 H 0.96998 * 120.00419 * 359.97438 * 23 22 21
40 40 H 0.97002 * 119.99488 * 180.02562 * 23 22 21
41 41 H 1.08993 * 109.68101 * 9.71603 * 25 9 7
42 42 H 1.09005 * 109.67420 * 249.16285 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7102 1.3462 0.0006
5 1 1.8915 2.3964 -1.2124
6 1 1.8915 2.3964 1.2124
7 6 2.0102 -1.2022 -0.0005
8 1 3.0552 -1.2226 0.2716
9 7 1.3699 -2.3623 -0.3460
10 6 1.8341 -3.6635 0.1606
11 6 1.9821 -4.6202 -1.0281
12 8 0.7660 -4.6288 -1.7796
13 6 0.4252 -3.3655 -2.3559
14 1 1.2383 -3.0271 -2.9980
15 6 -0.8536 -3.5096 -3.1834
16 7 -0.6369 -4.4899 -4.2503
17 6 -1.6329 -4.7809 -5.1105
18 8 -2.7082 -4.2309 -5.0016
19 6 -1.4098 -5.7890 -6.2084
20 6 -2.6886 -5.9332 -7.0358
21 7 -2.4719 -6.9135 -8.1027
22 6 -3.4679 -7.2046 -8.9628
23 7 -3.2687 -8.1069 -9.9440
24 8 -4.5461 -6.6533 -8.8536
25 6 0.1976 -2.3445 -1.2353
26 1 -0.4850 0.8400 -0.0004
27 1 1.1059 -4.0640 0.8657
28 1 2.7974 -3.5421 0.6561
29 1 2.1911 -5.6256 -0.6624
30 1 2.8012 -4.2859 -1.6647
31 1 -1.6666 -3.8463 -2.5402
32 1 -1.1124 -2.5463 -3.6228
33 1 0.2233 -4.9296 -4.3376
34 1 -0.5965 -5.4521 -6.8512
35 1 -1.1507 -6.7527 -5.7697
36 1 -3.5014 -6.2703 -6.3927
37 1 -2.9480 -4.9697 -7.4745
38 1 -1.6117 -7.3531 -8.1900
39 1 -2.4085 -8.5465 -10.0313
40 1 -3.9854 -8.3161 -10.5632
41 1 0.0770 -1.3497 -1.6639
42 1 -0.6955 -2.6123 -0.6706
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001753658408.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:17:17
Heat of formation + Delta-G solvation = -127.048066 kcal
Electronic energy + Delta-G solvation = -24170.622200 eV
Core-core repulsion = 20377.911758 eV
Total energy + Delta-G solvation = -3792.710441 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.163 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-41.09609 -40.63447 -39.93048 -36.52394 -36.20657 -35.76495 -34.63177 -33.26480
-32.70241 -31.32728 -29.06033 -27.34725 -25.18617 -24.71091 -23.13612 -22.20563
-21.71887 -21.08804 -19.33408 -18.91184 -18.30173 -17.86428 -17.53046 -17.12729
-16.89824 -16.79022 -16.11075 -16.03153 -15.70064 -15.49583 -15.17524 -15.02540
-14.96195 -14.76510 -14.52659 -14.16666 -13.65715 -13.18023 -13.02548 -12.86496
-12.69578 -12.50357 -12.44040 -12.17517 -12.06389 -11.86677 -11.56625 -11.30964
-10.99967 -10.77161 -10.73613 -10.55433 -10.12061 -9.98054 -8.76021 -7.91969
-5.39560 1.45334 1.47411 1.57882 1.65660 1.75636 2.17443 2.34675
2.48801 2.80649 3.23231 3.50522 3.60368 3.76954 3.98361 4.08455
4.11502 4.14127 4.29019 4.47049 4.53373 4.56525 4.62616 4.69873
4.85791 4.90056 4.96397 4.99777 5.08230 5.23694 5.41026 5.42751
5.53230 5.60046 5.92499 6.05467 6.26558 6.33147 6.58899 7.04869
7.14727 7.28610 7.67666 7.74208 8.27428 9.13868
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.027184 B = 0.002470 C = 0.002342
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1029.787224 B =11332.720403 C =11955.044235
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.937 5.937
2 C -0.053 4.053
3 Si 0.970 3.030
4 H -0.262 1.262
5 H -0.290 1.290
6 H -0.295 1.295
7 C -0.264 4.264
8 H 0.075 0.925
9 N -0.614 5.614
10 C 0.100 3.900
11 C 0.058 3.942
12 O -0.388 6.388
13 C 0.078 3.922
14 H 0.068 0.932
15 C 0.142 3.858
16 N -0.706 5.706
17 C 0.509 3.491
18 O -0.593 6.593
19 C -0.131 4.131
20 C 0.156 3.844
21 N -0.726 5.726
22 C 0.695 3.305
23 N -0.844 5.844
24 O -0.653 6.653
25 C 0.157 3.843
26 H 0.251 0.749
27 H 0.013 0.987
28 H 0.072 0.928
29 H 0.122 0.878
30 H 0.057 0.943
31 H 0.054 0.946
32 H 0.072 0.928
33 H 0.419 0.581
34 H 0.138 0.862
35 H 0.136 0.864
36 H 0.047 0.953
37 H 0.048 0.952
38 H 0.419 0.581
39 H 0.417 0.583
40 H 0.420 0.580
41 H 0.066 0.934
42 H -0.003 1.003
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.402 -18.994 -17.506 26.390
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.248 4.248
3 Si 0.798 3.202
4 H -0.186 1.186
5 H -0.216 1.216
6 H -0.222 1.222
7 C -0.393 4.393
8 H 0.093 0.907
9 N -0.339 5.339
10 C -0.026 4.026
11 C -0.019 4.019
12 O -0.307 6.307
13 C 0.019 3.981
14 H 0.086 0.914
15 C 0.016 3.984
16 N -0.358 5.358
17 C 0.296 3.704
18 O -0.473 6.473
19 C -0.171 4.171
20 C 0.031 3.969
21 N -0.385 5.385
22 C 0.393 3.607
23 N -0.414 5.414
24 O -0.535 6.535
25 C 0.030 3.970
26 H 0.060 0.940
27 H 0.031 0.969
28 H 0.091 0.909
29 H 0.140 0.860
30 H 0.075 0.925
31 H 0.073 0.927
32 H 0.090 0.910
33 H 0.256 0.744
34 H 0.156 0.844
35 H 0.154 0.846
36 H 0.065 0.935
37 H 0.066 0.934
38 H 0.257 0.743
39 H 0.248 0.752
40 H 0.253 0.747
41 H 0.084 0.916
42 H 0.015 0.985
Dipole moment (debyes) X Y Z Total
from point charges 3.666 -18.107 -17.186 25.232
hybrid contribution 0.746 0.973 0.345 1.274
sum 4.412 -17.134 -16.841 24.427
Atomic orbital electron populations
1.70191 1.06807 1.26005 1.55273 1.25864 0.96066 1.01761 1.01140
0.85166 0.78754 0.79560 0.76721 1.18607 1.21630 1.22195 1.19598
0.93072 0.85516 1.41150 0.90685 1.44366 1.33681 1.02433 1.53409
1.21854 0.98490 0.86513 0.95695 1.23079 0.85878 1.00645 0.92335
1.87788 1.43037 1.30499 1.69394 1.22725 0.95953 0.85365 0.94074
0.91406 1.21056 0.96133 0.92923 0.88238 1.45752 1.16557 1.43342
1.30144 1.21140 0.83176 0.83022 0.83052 1.90754 1.27284 1.54734
1.74565 1.21712 0.99469 1.00393 0.95527 1.20632 0.96986 0.91525
0.87802 1.44734 1.15595 1.46228 1.31915 1.16271 0.83592 0.80383
0.80503 1.42742 1.20326 1.45124 1.33192 1.90974 1.27577 1.58110
1.76878 1.21110 0.88196 0.97677 0.90008 0.94000 0.96866 0.90933
0.85988 0.92513 0.92742 0.90990 0.74381 0.84407 0.84567 0.93455
0.93361 0.74326 0.75209 0.74739 0.91598 0.98490
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -55.34 11.14 21.65 0.24 -55.10 16
2 C -0.05 -2.91 4.95 84.86 0.42 -2.49 16
3 Si 0.97 44.00 29.59 68.60 2.03 46.03 16
4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16
5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16
6 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16
7 C -0.26 -14.08 9.65 84.03 0.81 -13.27 16
8 H 0.08 3.84 7.88 -2.91 -0.02 3.82 16
9 N -0.61 -30.14 3.05 -697.53 -2.13 -32.27 16
10 C 0.10 3.91 6.73 86.36 0.58 4.49 16
11 C 0.06 1.73 6.99 72.08 0.50 2.23 16
12 O -0.39 -12.70 10.13 -148.98 -1.51 -14.21 16
13 C 0.08 2.78 2.87 30.69 0.09 2.87 16
14 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16
15 C 0.14 4.64 5.37 86.38 0.46 5.10 16
16 N -0.71 -16.82 5.45 -463.07 -2.52 -19.34 16
17 C 0.51 12.57 7.83 87.66 0.69 13.26 16
18 O -0.59 -21.43 15.98 -3.02 -0.05 -21.47 16
19 C -0.13 -1.65 5.81 29.85 0.17 -1.48 16
20 C 0.16 3.07 4.96 86.38 0.43 3.50 16
21 N -0.73 -9.45 5.56 -478.55 -2.66 -12.12 16
22 C 0.69 13.28 8.84 179.05 1.58 14.86 16
23 N -0.84 -6.85 8.88 -184.74 -1.64 -8.49 16
24 O -0.65 -21.00 17.18 -3.98 -0.07 -21.06 16
25 C 0.16 7.47 4.73 86.35 0.41 7.88 16
26 H 0.25 14.39 8.31 -92.71 -0.77 13.61 16
27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16
28 H 0.07 2.65 7.96 -2.39 -0.02 2.63 16
29 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16
30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16
31 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16
32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16
33 H 0.42 7.21 8.35 -92.71 -0.77 6.44 16
34 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16
35 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16
36 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16
37 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16
38 H 0.42 1.44 8.49 -92.71 -0.79 0.65 16
39 H 0.42 -0.01 8.84 -92.71 -0.82 -0.83 16
40 H 0.42 3.01 8.93 -92.71 -0.83 2.18 16
41 H 0.07 3.53 6.14 -2.39 -0.01 3.51 16
42 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16
Total: -1.00 -85.03 351.38 -4.29 -89.32
By element:
Atomic # 1 Polarization: 13.91 SS G_CDS: -2.13 Total: 11.78 kcal
Atomic # 6 Polarization: 30.79 SS G_CDS: 6.15 Total: 36.94 kcal
Atomic # 7 Polarization: -118.61 SS G_CDS: -8.71 Total: -127.32 kcal
Atomic # 8 Polarization: -55.12 SS G_CDS: -1.63 Total: -56.75 kcal
Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal
Total: -85.03 -4.29 -89.32 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753658408.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.731 kcal
(2) G-P(sol) polarization free energy of solvation -85.029 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.761 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.317 kcal
(6) G-S(sol) free energy of system = (1) + (5) -127.048 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds