Wall clock time and date at job start Tue Mar 31 2020 03:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47293 * 239.99931 * 3 2 1 5 5 H 1.48502 * 109.46697 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47104 * 119.99668 * 3 2 1 7 7 C 1.38811 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00358 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00138 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00366 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47479 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47088 * 179.97438 * 11 10 9 13 13 C 1.46506 * 119.99537 * 269.99330 * 12 11 10 14 14 C 1.52998 * 109.47320 * 269.99999 * 13 12 11 15 15 O 1.42902 * 109.46765 * 65.00041 * 14 13 12 16 16 C 1.34777 * 120.00199 * 89.99979 * 12 11 10 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 12 11 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 12 11 19 19 C 1.52996 * 109.47159 * 179.72352 * 18 16 12 20 20 H 1.09004 * 110.76826 * 308.52541 * 19 18 16 21 21 C 1.54571 * 110.86988 * 72.26936 * 19 18 16 22 22 O 1.45836 * 104.44244 * 145.01364 * 21 19 18 23 23 C 1.34068 * 109.90731 * 329.39616 * 22 21 19 24 24 O 1.20826 * 125.09608 * 200.83073 * 23 22 21 25 25 C 1.51332 * 109.80805 * 20.83655 * 23 22 21 26 26 H 0.96999 * 119.99574 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99696 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.46920 * 59.99310 * 10 9 7 29 29 H 1.09005 * 109.46881 * 299.99657 * 10 9 7 30 30 H 1.09001 * 109.46980 * 59.99563 * 11 10 9 31 31 H 1.09005 * 109.46685 * 299.99656 * 11 10 9 32 32 H 1.08994 * 109.46996 * 30.00327 * 13 12 11 33 33 H 1.09001 * 109.46578 * 150.00190 * 13 12 11 34 34 H 1.08993 * 109.47026 * 185.00460 * 14 13 12 35 35 H 1.08999 * 109.47226 * 305.00909 * 14 13 12 36 36 H 0.96701 * 113.99649 * 179.97438 * 15 14 13 37 37 H 1.09004 * 109.46965 * 299.72211 * 18 16 12 38 38 H 1.08994 * 109.46990 * 59.72065 * 18 16 12 39 39 H 1.08996 * 110.44197 * 263.75795 * 21 19 18 40 40 H 1.09002 * 110.43574 * 26.27786 * 21 19 18 41 41 H 1.09004 * 110.36408 * 238.84205 * 25 23 22 42 42 H 1.08999 * 110.36789 * 116.52334 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0008 12 7 1.7964 -6.0884 0.0013 13 6 2.1636 -6.7227 -1.2673 14 6 1.0422 -7.6648 -1.7098 15 8 -0.1341 -6.9047 -1.9937 16 6 2.1324 -6.6721 1.1687 17 8 1.8288 -6.1468 2.2188 18 6 2.8914 -7.9741 1.1692 19 6 3.1501 -8.4131 2.6118 20 1 3.6032 -7.6051 3.1863 21 6 1.8461 -8.9055 3.2798 22 8 2.2737 -9.9888 4.1575 23 6 3.3489 -10.5991 3.6390 24 8 3.7160 -11.7158 3.9183 25 6 4.0341 -9.6794 2.6516 26 1 -0.4849 0.8401 -0.0004 27 1 0.3556 -2.3880 0.0005 28 1 2.6841 -3.7141 0.8921 29 1 2.6854 -3.7149 -0.8879 30 1 0.4382 -4.7622 -0.8899 31 1 0.4362 -4.7618 0.8901 32 1 2.3146 -5.9556 -2.0267 33 1 3.0847 -7.2906 -1.1363 34 1 1.3521 -8.2029 -2.6055 35 1 0.8306 -8.3775 -0.9127 36 1 -0.8874 -7.4386 -2.2812 37 1 2.3048 -8.7368 0.6570 38 1 3.8425 -7.8403 0.6539 39 1 1.3891 -8.1036 3.8597 40 1 1.1500 -9.2771 2.5278 41 1 4.0758 -10.1441 1.6664 42 1 5.0374 -9.4312 2.9976 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754880879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:27 Heat of formation + Delta-G solvation = -153.109730 kcal Electronic energy + Delta-G solvation = -24730.239081 eV Core-core repulsion = 20904.105770 eV Total energy + Delta-G solvation = -3826.133311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.37262 -40.00716 -37.81868 -37.31945 -35.73601 -34.63101 -34.28907 -31.59756 -29.71916 -29.36601 -27.98789 -26.76529 -23.73707 -23.33148 -21.97734 -21.60372 -21.14861 -19.12357 -18.03321 -17.55183 -17.23150 -17.02880 -16.72285 -16.55672 -16.08195 -15.67655 -14.77939 -14.57479 -14.37338 -14.18235 -13.94646 -13.75222 -13.52844 -13.48667 -13.14453 -12.81039 -12.76113 -12.51304 -12.31885 -11.84857 -11.65014 -11.54783 -11.22561 -10.93081 -10.89105 -10.88820 -10.62970 -10.52347 -10.30144 -10.13639 -9.83123 -9.67500 -8.85108 -8.58546 -6.91228 -5.74199 -3.03393 1.73978 2.55727 2.88990 2.98652 3.45633 3.49671 3.51064 3.58534 3.79709 3.95931 4.10778 4.25469 4.52771 4.62638 4.70352 4.78712 4.87700 4.88263 5.00603 5.01812 5.06681 5.17806 5.26093 5.40848 5.51318 5.56109 5.65658 5.74930 5.90301 6.06276 6.20466 6.44505 6.52340 6.74583 6.92054 7.13195 7.34730 7.47315 7.70694 8.14758 8.44381 9.55059 10.11998 10.46891 11.48658 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.003060 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.523919 B = 9148.461148 C =10084.284250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.144 3.856 11 C 0.111 3.889 12 N -0.597 5.597 13 C 0.104 3.896 14 C 0.058 3.942 15 O -0.561 6.561 16 C 0.506 3.494 17 O -0.530 6.530 18 C -0.134 4.134 19 C -0.108 4.108 20 H 0.113 0.887 21 C 0.062 3.938 22 O -0.347 6.347 23 C 0.483 3.517 24 O -0.463 6.463 25 C -0.185 4.185 26 H 0.256 0.744 27 H 0.384 0.616 28 H 0.020 0.980 29 H 0.015 0.985 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.378 0.622 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.870 -22.805 -2.950 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.015 3.985 11 C -0.011 4.011 12 N -0.329 5.329 13 C -0.020 4.020 14 C -0.021 4.021 15 O -0.366 6.366 16 C 0.293 3.707 17 O -0.407 6.407 18 C -0.174 4.174 19 C -0.127 4.127 20 H 0.131 0.869 21 C -0.012 4.012 22 O -0.263 6.263 23 C 0.324 3.676 24 O -0.347 6.347 25 C -0.223 4.223 26 H 0.066 0.934 27 H 0.218 0.782 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.141 0.859 40 H 0.101 0.899 41 H 0.132 0.868 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.273 -22.462 -1.890 23.150 hybrid contribution -0.087 0.553 -0.492 0.745 sum 5.187 -21.909 -2.382 22.641 Atomic orbital electron populations 1.69655 1.05099 1.25782 1.57637 1.24748 0.95552 0.97688 1.02981 0.86243 0.78503 0.83461 0.77826 1.21289 1.21639 1.21249 1.19151 0.90935 0.84032 1.42870 0.91319 1.42194 1.05885 0.99758 1.89586 1.20899 0.93933 0.85898 0.97763 1.21734 0.94558 0.80993 1.03790 1.47818 1.56656 1.23432 1.05003 1.21735 0.95796 0.97512 0.86929 1.22691 0.87058 0.93672 0.98728 1.86606 1.22436 1.37539 1.90069 1.20485 0.80087 0.86271 0.83876 1.90751 1.54299 1.64914 1.30688 1.21801 1.02313 0.96295 0.97000 1.22299 0.95702 0.97868 0.96809 0.86925 1.24335 0.96243 0.87453 0.93188 1.87059 1.45521 1.46421 1.47329 1.23125 0.79719 0.85686 0.79101 1.90718 1.66372 1.17181 1.60411 1.22996 1.02080 0.95568 1.01634 0.93432 0.78222 0.96215 0.96710 0.89469 0.90024 0.88791 0.88996 0.92699 0.93820 0.77532 0.88605 0.87661 0.85854 0.89857 0.86806 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -19.13 5.60 -59.91 -0.34 -19.46 16 10 C 0.14 3.00 6.58 -4.04 -0.03 2.97 16 11 C 0.11 1.88 5.34 -4.04 -0.02 1.86 16 12 N -0.60 -7.32 2.44 -173.68 -0.42 -7.75 16 13 C 0.10 0.86 5.62 -4.04 -0.02 0.84 16 14 C 0.06 0.39 7.39 37.16 0.27 0.66 16 15 O -0.56 -5.28 12.48 -35.23 -0.44 -5.72 16 16 C 0.51 5.99 7.51 -10.98 -0.08 5.91 16 17 O -0.53 -8.54 14.72 5.55 0.08 -8.46 16 18 C -0.13 -0.86 3.56 -27.88 -0.10 -0.96 16 19 C -0.11 -0.77 2.74 -89.02 -0.24 -1.01 16 20 H 0.11 0.95 7.87 -51.93 -0.41 0.54 16 21 C 0.06 0.52 6.78 37.98 0.26 0.77 16 22 O -0.35 -3.76 11.05 -38.48 -0.43 -4.18 16 23 C 0.48 4.96 8.58 36.32 0.31 5.27 16 24 O -0.46 -6.36 18.00 -18.41 -0.33 -6.69 16 25 C -0.18 -1.11 6.52 -26.79 -0.17 -1.28 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.38 10.53 7.67 -40.82 -0.31 10.21 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 1.49 7.11 -51.93 -0.37 1.12 16 31 H 0.08 1.55 7.42 -51.93 -0.39 1.16 16 32 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.09 0.44 6.43 -51.93 -0.33 0.11 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.04 0.25 7.32 -51.93 -0.38 -0.13 16 36 H 0.38 1.93 9.12 45.56 0.42 2.35 16 37 H 0.10 0.39 7.08 -51.93 -0.37 0.02 16 38 H 0.11 0.45 7.40 -51.93 -0.38 0.07 16 39 H 0.12 1.16 7.82 -51.93 -0.41 0.76 16 40 H 0.08 0.56 7.77 -51.93 -0.40 0.16 16 41 H 0.11 0.43 7.80 -51.93 -0.40 0.03 16 42 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -37.96 351.93 -6.34 -44.30 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.40 Total: 5.40 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -0.07 Total: 7.52 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.03 Total: -55.16 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -1.11 Total: -25.06 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.96 -6.34 -44.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754880879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.812 kcal (2) G-P(sol) polarization free energy of solvation -37.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds