Wall clock time and date at job start Tue Mar 31 2020 03:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47293 * 239.99931 * 3 2 1 5 5 H 1.48502 * 109.46697 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47104 * 119.99668 * 3 2 1 7 7 C 1.38811 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00358 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00138 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00366 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47479 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47088 * 179.97438 * 11 10 9 13 13 C 1.46506 * 119.99537 * 269.99330 * 12 11 10 14 14 C 1.52998 * 109.47320 * 269.99999 * 13 12 11 15 15 O 1.42902 * 109.46765 * 65.00041 * 14 13 12 16 16 C 1.34777 * 120.00199 * 89.99979 * 12 11 10 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 12 11 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 12 11 19 19 C 1.52996 * 109.47159 * 179.72352 * 18 16 12 20 20 H 1.09004 * 110.76826 * 308.52541 * 19 18 16 21 21 C 1.54571 * 110.86988 * 72.26936 * 19 18 16 22 22 O 1.45836 * 104.44244 * 145.01364 * 21 19 18 23 23 C 1.34068 * 109.90731 * 329.39616 * 22 21 19 24 24 O 1.20826 * 125.09608 * 200.83073 * 23 22 21 25 25 C 1.51332 * 109.80805 * 20.83655 * 23 22 21 26 26 H 0.96999 * 119.99574 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99696 * 359.97438 * 9 7 2 28 28 H 1.08999 * 109.46920 * 59.99310 * 10 9 7 29 29 H 1.09005 * 109.46881 * 299.99657 * 10 9 7 30 30 H 1.09001 * 109.46980 * 59.99563 * 11 10 9 31 31 H 1.09005 * 109.46685 * 299.99656 * 11 10 9 32 32 H 1.08994 * 109.46996 * 30.00327 * 13 12 11 33 33 H 1.09001 * 109.46578 * 150.00190 * 13 12 11 34 34 H 1.08993 * 109.47026 * 185.00460 * 14 13 12 35 35 H 1.08999 * 109.47226 * 305.00909 * 14 13 12 36 36 H 0.96701 * 113.99649 * 179.97438 * 15 14 13 37 37 H 1.09004 * 109.46965 * 299.72211 * 18 16 12 38 38 H 1.08994 * 109.46990 * 59.72065 * 18 16 12 39 39 H 1.08996 * 110.44197 * 263.75795 * 21 19 18 40 40 H 1.09002 * 110.43574 * 26.27786 * 21 19 18 41 41 H 1.09004 * 110.36408 * 238.84205 * 25 23 22 42 42 H 1.08999 * 110.36789 * 116.52334 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0008 12 7 1.7964 -6.0884 0.0013 13 6 2.1636 -6.7227 -1.2673 14 6 1.0422 -7.6648 -1.7098 15 8 -0.1341 -6.9047 -1.9937 16 6 2.1324 -6.6721 1.1687 17 8 1.8288 -6.1468 2.2188 18 6 2.8914 -7.9741 1.1692 19 6 3.1501 -8.4131 2.6118 20 1 3.6032 -7.6051 3.1863 21 6 1.8461 -8.9055 3.2798 22 8 2.2737 -9.9888 4.1575 23 6 3.3489 -10.5991 3.6390 24 8 3.7160 -11.7158 3.9183 25 6 4.0341 -9.6794 2.6516 26 1 -0.4849 0.8401 -0.0004 27 1 0.3556 -2.3880 0.0005 28 1 2.6841 -3.7141 0.8921 29 1 2.6854 -3.7149 -0.8879 30 1 0.4382 -4.7622 -0.8899 31 1 0.4362 -4.7618 0.8901 32 1 2.3146 -5.9556 -2.0267 33 1 3.0847 -7.2906 -1.1363 34 1 1.3521 -8.2029 -2.6055 35 1 0.8306 -8.3775 -0.9127 36 1 -0.8874 -7.4386 -2.2812 37 1 2.3048 -8.7368 0.6570 38 1 3.8425 -7.8403 0.6539 39 1 1.3891 -8.1036 3.8597 40 1 1.1500 -9.2771 2.5278 41 1 4.0758 -10.1441 1.6664 42 1 5.0374 -9.4312 2.9976 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754880879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:27 Heat of formation + Delta-G solvation = -183.361921 kcal Electronic energy + Delta-G solvation = -24731.550914 eV Core-core repulsion = 20904.105770 eV Total energy + Delta-G solvation = -3827.445144 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.11243 -40.93827 -38.65952 -38.05863 -37.07957 -35.83964 -35.28591 -33.44666 -30.94801 -30.00346 -28.94470 -27.89152 -25.55549 -23.96866 -23.41227 -22.30598 -22.13171 -20.06288 -19.18600 -18.68793 -18.24029 -17.85413 -17.49882 -17.43397 -17.06449 -16.60792 -16.42991 -15.48600 -15.42181 -15.31587 -15.06692 -14.85497 -14.75165 -14.60174 -14.33742 -13.86989 -13.51011 -13.21562 -13.10751 -12.91686 -12.85339 -12.72570 -12.45530 -12.28763 -12.21791 -12.15465 -12.03390 -11.87479 -11.55044 -11.31948 -10.96973 -10.86573 -10.69064 -9.63573 -9.06388 -7.97505 -5.28486 0.99437 1.45672 1.50096 1.56148 1.68398 1.97600 2.28172 2.55913 2.97689 3.19640 3.35467 3.49724 3.54433 3.65451 3.92393 4.10525 4.15973 4.19408 4.31270 4.35358 4.38299 4.46678 4.55571 4.57378 4.64933 4.66300 4.68263 4.78185 4.86547 5.00273 5.08480 5.12890 5.13974 5.42593 5.58651 5.75519 6.23765 6.37837 6.51091 7.02386 7.24328 7.29454 8.02500 8.26901 9.25865 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.003060 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.523919 B = 9148.461148 C =10084.284250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.979 3.021 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.150 3.850 11 C 0.132 3.868 12 N -0.597 5.597 13 C 0.094 3.906 14 C 0.055 3.945 15 O -0.598 6.598 16 C 0.498 3.502 17 O -0.584 6.584 18 C -0.121 4.121 19 C -0.102 4.102 20 H 0.095 0.905 21 C 0.058 3.942 22 O -0.373 6.373 23 C 0.479 3.521 24 O -0.507 6.507 25 C -0.163 4.163 26 H 0.253 0.747 27 H 0.374 0.626 28 H 0.003 0.997 29 H 0.026 0.974 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.393 0.607 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.151 0.849 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.885 -24.330 -4.809 25.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.807 3.193 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.388 5.388 10 C 0.022 3.978 11 C 0.008 3.992 12 N -0.329 5.329 13 C -0.028 4.028 14 C -0.023 4.023 15 O -0.406 6.406 16 C 0.288 3.712 17 O -0.463 6.463 18 C -0.160 4.160 19 C -0.122 4.122 20 H 0.113 0.887 21 C -0.016 4.016 22 O -0.289 6.289 23 C 0.323 3.677 24 O -0.394 6.394 25 C -0.201 4.201 26 H 0.062 0.938 27 H 0.205 0.795 28 H 0.021 0.979 29 H 0.044 0.956 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.242 0.758 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.169 0.831 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.318 -24.036 -3.788 25.410 hybrid contribution -0.742 0.989 0.113 1.242 sum 6.576 -23.047 -3.675 24.247 Atomic orbital electron populations 1.69823 1.06707 1.26383 1.59019 1.25652 0.96499 1.01328 1.03232 0.85141 0.77205 0.78679 0.78294 1.19883 1.21851 1.20524 1.19569 0.91431 0.85234 1.42059 0.90776 1.42421 1.05648 1.01140 1.89546 1.20966 0.94374 0.85401 0.97010 1.21156 0.93526 0.82389 1.02129 1.47890 1.56099 1.21754 1.07171 1.22165 0.98508 0.97709 0.84382 1.22843 0.85641 0.93193 1.00631 1.86558 1.24049 1.39594 1.90411 1.21537 0.79363 0.87632 0.82654 1.90742 1.56299 1.66710 1.32596 1.21883 1.03655 0.93478 0.96982 1.22215 0.94924 0.97902 0.97124 0.88686 1.24440 0.97463 0.86531 0.93122 1.87021 1.46334 1.47054 1.48535 1.23826 0.79362 0.85470 0.79091 1.90691 1.67314 1.19279 1.62149 1.22966 1.01641 0.93428 1.02052 0.93799 0.79454 0.97923 0.95616 0.89792 0.92920 0.90466 0.84397 0.89623 0.92158 0.75754 0.84822 0.83946 0.87918 0.87811 0.83088 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.77 13.06 21.65 0.28 -60.48 16 2 C -0.07 -4.41 5.50 84.86 0.47 -3.95 16 3 Si 0.98 46.87 29.55 68.60 2.03 48.89 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 7 C -0.25 -14.61 9.99 84.03 0.84 -13.77 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -40.07 5.60 -343.45 -1.92 -41.99 16 10 C 0.15 6.37 6.58 86.38 0.57 6.94 16 11 C 0.13 4.55 5.34 86.38 0.46 5.01 16 12 N -0.60 -13.68 2.44 -821.80 -2.00 -15.68 16 13 C 0.09 1.22 5.62 86.38 0.49 1.71 16 14 C 0.06 0.53 7.39 71.98 0.53 1.06 16 15 O -0.60 -10.22 12.48 -148.98 -1.86 -12.08 16 16 C 0.50 10.88 7.51 87.66 0.66 11.54 16 17 O -0.58 -19.08 14.72 -3.04 -0.04 -19.13 16 18 C -0.12 -0.99 3.56 29.85 0.11 -0.88 16 19 C -0.10 -1.18 2.74 -9.75 -0.03 -1.21 16 20 H 0.09 1.48 7.87 -2.38 -0.02 1.46 16 21 C 0.06 0.91 6.78 72.52 0.49 1.40 16 22 O -0.37 -7.93 11.05 -50.19 -0.55 -8.48 16 23 C 0.48 9.13 8.58 71.44 0.61 9.75 16 24 O -0.51 -13.63 18.00 21.64 0.39 -13.24 16 25 C -0.16 -1.32 6.52 30.55 0.20 -1.12 16 26 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 27 H 0.37 21.32 7.67 -92.71 -0.71 20.60 16 28 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.08 2.93 7.11 -2.39 -0.02 2.92 16 31 H 0.05 2.11 7.42 -2.38 -0.02 2.09 16 32 H 0.08 1.30 8.07 -2.39 -0.02 1.28 16 33 H 0.14 0.49 6.43 -2.39 -0.02 0.47 16 34 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.06 0.38 7.32 -2.39 -0.02 0.37 16 36 H 0.39 3.39 9.12 -74.06 -0.68 2.72 16 37 H 0.13 0.19 7.08 -2.38 -0.02 0.18 16 38 H 0.14 0.25 7.40 -2.39 -0.02 0.23 16 39 H 0.10 2.04 7.82 -2.39 -0.02 2.02 16 40 H 0.10 1.17 7.77 -2.39 -0.02 1.15 16 41 H 0.15 0.20 7.80 -2.39 -0.02 0.18 16 42 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -87.81 351.93 1.38 -86.43 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.33 Total: 19.28 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 5.40 Total: 16.48 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -3.64 Total: -118.16 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: -2.07 Total: -52.92 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -87.81 1.38 -86.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754880879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.928 kcal (2) G-P(sol) polarization free energy of solvation -87.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds