Wall clock time and date at job start Tue Mar 31 2020 04:21:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.46494 * 119.99669 * 2 1
4 4 C 1.53002 * 109.47345 * 269.99866 * 3 2 1
5 5 H 1.09002 * 109.47070 * 305.00306 * 4 3 2
6 6 O 1.42903 * 109.46923 * 65.00471 * 4 3 2
7 7 C 1.53000 * 109.47233 * 184.99932 * 4 3 2
8 8 N 1.46500 * 109.47023 * 180.02562 * 7 4 3
9 9 C 1.36942 * 120.00064 * 180.02562 * 8 7 4
10 10 H 1.08003 * 119.99604 * 0.02562 * 9 8 7
11 11 C 1.38806 * 119.99823 * 179.97438 * 9 8 7
12 12 N 1.31622 * 120.00531 * 0.02562 * 11 9 8
13 13 Si 1.86808 * 119.99752 * 179.97438 * 11 9 8
14 14 H 1.48494 * 109.46846 * 0.02562 * 13 11 9
15 15 H 1.48498 * 109.47166 * 120.00071 * 13 11 9
16 16 H 1.48499 * 109.46858 * 240.00004 * 13 11 9
17 17 C 1.34773 * 120.00003 * 180.02562 * 2 1 3
18 18 O 1.21283 * 120.00058 * 179.97438 * 17 2 1
19 19 C 1.50700 * 120.00384 * 0.02562 * 17 2 1
20 20 H 1.08998 * 110.48787 * 38.75142 * 19 17 2
21 21 C 1.54102 * 110.54603 * 275.89721 * 19 17 2
22 22 N 1.47052 * 103.86224 * 241.40346 * 21 19 17
23 23 C 1.46505 * 125.41310 * 180.02562 * 22 21 19
24 24 C 1.33943 * 109.18054 * 359.97438 * 22 21 19
25 25 O 1.21586 * 123.04735 * 179.97438 * 24 22 21
26 26 N 1.33951 * 113.91692 * 0.02562 * 24 22 21
27 27 H 1.09001 * 109.47004 * 90.00384 * 1 2 3
28 28 H 1.09003 * 109.46690 * 209.99559 * 1 2 3
29 29 H 1.09000 * 109.47243 * 329.99587 * 1 2 3
30 30 H 1.09008 * 109.47020 * 150.00097 * 3 2 1
31 31 H 1.08997 * 109.47417 * 30.00091 * 3 2 1
32 32 H 0.96700 * 114.00234 * 59.99815 * 6 4 3
33 33 H 1.08992 * 109.47399 * 300.00166 * 7 4 3
34 34 H 1.09004 * 109.46724 * 60.00652 * 7 4 3
35 35 H 0.97004 * 120.00031 * 359.97438 * 8 7 4
36 36 H 0.96997 * 120.00209 * 179.97438 * 12 11 9
37 37 H 1.09002 * 110.55194 * 359.97438 * 21 19 17
38 38 H 1.09004 * 110.54862 * 122.81017 * 21 19 17
39 39 H 1.09000 * 109.47254 * 179.97438 * 23 22 21
40 40 H 1.08998 * 109.46875 * 299.97615 * 23 22 21
41 41 H 1.09000 * 109.46751 * 59.97421 * 23 22 21
42 42 H 0.97004 * 125.41529 * 180.02562 * 26 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2687 0.0000
4 6 2.4525 1.7104 -1.4425
5 1 2.9642 0.9131 -1.9815
6 8 1.2060 1.9936 -2.0814
7 6 3.3237 2.9682 -1.4443
8 7 3.5673 3.3914 -2.8255
9 6 4.3282 4.5019 -3.0773
10 1 4.7489 5.0653 -2.2575
11 6 4.5594 4.9026 -4.3859
12 7 4.0471 4.2156 -5.3850
13 14 5.5967 6.4178 -4.7293
14 1 6.0515 7.0077 -3.4447
15 1 6.7782 6.0347 -5.5433
16 1 4.7855 7.4148 -5.4729
17 6 2.1389 -1.1672 -0.0005
18 8 3.3517 -1.1672 -0.0010
19 6 1.3855 -2.4723 -0.0017
20 1 0.5054 -2.4042 -0.6411
21 6 0.9861 -2.8676 1.4333
22 7 1.6762 -4.1477 1.6511
23 6 1.6172 -4.9459 2.8781
24 6 2.3664 -4.4687 0.5490
25 8 3.0321 -5.4817 0.4551
26 7 2.2578 -3.5720 -0.4402
27 1 -0.3633 -0.0001 -1.0277
28 1 -0.3633 -0.8901 0.5138
29 1 -0.3634 0.8899 0.5139
30 1 3.1499 1.1384 0.5139
31 1 1.6084 2.0283 0.5138
32 1 0.6954 2.6950 -1.6542
33 1 2.8120 3.7654 -0.9053
34 1 4.2745 2.7522 -0.9570
35 1 3.1903 2.8847 -3.5617
36 1 4.2084 4.4958 -6.2994
37 1 1.3332 -2.1201 2.1467
38 1 -0.0936 -2.9974 1.5079
39 1 2.2233 -5.8437 2.7571
40 1 2.0005 -4.3585 3.7124
41 1 0.5838 -5.2294 3.0778
42 1 2.6860 -3.6377 -1.3081
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001755784650.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:21:00
Heat of formation + Delta-G solvation = -69.189847 kcal
Electronic energy + Delta-G solvation = -24872.043404 eV
Core-core repulsion = 21081.841884 eV
Total energy + Delta-G solvation = -3790.201521 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.163 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.70392 -39.77902 -37.59506 -36.44105 -35.42260 -34.41296 -34.02873 -31.47225
-30.39304 -29.12331 -27.58842 -26.95494 -25.57219 -23.91087 -22.62523 -21.25649
-20.86865 -19.79387 -18.07664 -17.79778 -17.18246 -16.84300 -16.42725 -16.12095
-15.85628 -15.19710 -15.03076 -14.55657 -14.46173 -14.34714 -14.05673 -13.80737
-13.65834 -13.34928 -13.01597 -12.86257 -12.77836 -12.64391 -12.47704 -12.36426
-12.10388 -11.59291 -10.95267 -10.84307 -10.75222 -10.55093 -10.39985 -10.16036
-9.90323 -9.73421 -9.48423 -8.95806 -8.90722 -8.66677 -6.92643 -5.75320
-3.04972 2.05469 2.39158 2.53292 2.96760 3.43424 3.48539 3.51227
3.53307 3.85085 4.02882 4.37623 4.54468 4.58061 4.70005 4.72238
4.85808 4.96453 4.97220 5.07272 5.13087 5.19930 5.34136 5.47837
5.53634 5.56468 5.61889 5.68334 5.93332 6.17687 6.28307 6.31502
6.51351 6.70108 6.80067 7.05369 7.14365 7.68765 7.86512 7.97448
8.30991 8.42824 9.54373 10.11896 10.47552 11.47112
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.029596 B = 0.002754 C = 0.002649
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 945.838934 B =10164.524083 C =10568.236863
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.075 3.925
2 N -0.603 5.603
3 C 0.086 3.914
4 C 0.087 3.913
5 H 0.099 0.901
6 O -0.550 6.550
7 C 0.127 3.873
8 N -0.725 5.725
9 C -0.242 4.242
10 H 0.070 0.930
11 C -0.013 4.013
12 N -0.930 5.930
13 Si 0.907 3.093
14 H -0.280 1.280
15 H -0.291 1.291
16 H -0.291 1.291
17 C 0.500 3.500
18 O -0.516 6.516
19 C 0.105 3.895
20 H 0.117 0.883
21 C 0.108 3.892
22 N -0.638 5.638
23 C 0.119 3.881
24 C 0.705 3.295
25 O -0.582 6.582
26 N -0.714 5.714
27 H 0.069 0.931
28 H 0.065 0.935
29 H 0.076 0.924
30 H 0.094 0.906
31 H 0.083 0.917
32 H 0.367 0.633
33 H 0.020 0.980
34 H 0.027 0.973
35 H 0.389 0.611
36 H 0.255 0.745
37 H 0.085 0.915
38 H 0.094 0.906
39 H 0.087 0.913
40 H 0.061 0.939
41 H 0.062 0.938
42 H 0.436 0.564
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.558 -13.772 18.027 26.955
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 N -0.336 5.336
3 C -0.037 4.037
4 C 0.026 3.974
5 H 0.117 0.883
6 O -0.354 6.354
7 C -0.002 4.002
8 N -0.370 5.370
9 C -0.373 4.373
10 H 0.088 0.912
11 C -0.209 4.209
12 N -0.578 5.578
13 Si 0.739 3.261
14 H -0.206 1.206
15 H -0.218 1.218
16 H -0.218 1.218
17 C 0.284 3.716
18 O -0.390 6.390
19 C -0.006 4.006
20 H 0.135 0.865
21 C -0.016 4.016
22 N -0.378 5.378
23 C -0.023 4.023
24 C 0.406 3.594
25 O -0.459 6.459
26 N -0.376 5.376
27 H 0.088 0.912
28 H 0.084 0.916
29 H 0.095 0.905
30 H 0.112 0.888
31 H 0.102 0.898
32 H 0.213 0.787
33 H 0.037 0.963
34 H 0.044 0.956
35 H 0.223 0.777
36 H 0.065 0.935
37 H 0.103 0.897
38 H 0.112 0.888
39 H 0.106 0.894
40 H 0.080 0.920
41 H 0.080 0.920
42 H 0.279 0.721
Dipole moment (debyes) X Y Z Total
from point charges -13.262 -14.731 17.771 26.622
hybrid contribution 0.346 1.442 -0.515 1.570
sum -12.916 -13.290 17.256 25.322
Atomic orbital electron populations
1.21924 0.79034 1.02793 1.03006 1.47720 1.07254 1.05677 1.72959
1.22310 0.98448 0.84167 0.98752 1.22533 0.85231 0.98205 0.91420
0.88268 1.86613 1.32264 1.59029 1.57512 1.21211 0.96364 0.92872
0.89796 1.42246 1.61784 1.32240 1.00762 1.19260 1.23624 1.02622
0.91841 0.91217 1.24768 1.01169 0.99426 0.95584 1.69692 1.49083
1.40786 0.98227 0.86112 0.79722 0.82544 0.77767 1.20571 1.21819
1.21832 1.20715 0.88361 0.85146 0.77368 1.90792 1.13449 1.86800
1.47944 1.21878 0.94379 0.87080 0.97244 0.86512 1.22240 0.98654
0.86731 0.93966 1.46991 1.52143 1.23470 1.15182 1.21428 1.02216
0.95497 0.83128 1.15803 0.79809 0.83178 0.80627 1.90967 1.45633
1.27382 1.81953 1.44880 1.53744 1.21273 1.17693 0.91207 0.91597
0.90548 0.88811 0.89840 0.78666 0.96266 0.95562 0.77672 0.93532
0.89659 0.88777 0.89418 0.92036 0.91965 0.72127
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.41 9.56 59.85 0.57 0.98 16
2 N -0.60 -5.79 2.84 -181.57 -0.52 -6.30 16
3 C 0.09 0.99 5.11 -4.04 -0.02 0.97 16
4 C 0.09 1.36 3.30 -26.73 -0.09 1.27 16
5 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16
6 O -0.55 -8.39 12.64 -35.23 -0.45 -8.83 16
7 C 0.13 2.47 5.92 -4.04 -0.02 2.45 16
8 N -0.73 -18.75 5.49 -59.91 -0.33 -19.08 16
9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16
10 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16
11 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16
12 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16
13 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16
14 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16
15 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16
16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
17 C 0.50 5.77 6.78 -10.99 -0.07 5.69 16
18 O -0.52 -8.49 16.18 5.56 0.09 -8.40 16
19 C 0.10 0.87 3.17 -68.21 -0.22 0.65 16
20 H 0.12 0.64 7.20 -51.93 -0.37 0.26 16
21 C 0.11 0.68 6.44 -3.17 -0.02 0.66 16
22 N -0.64 -5.97 3.36 -186.74 -0.63 -6.60 16
23 C 0.12 0.79 11.22 59.85 0.67 1.46 16
24 C 0.71 9.24 8.60 -88.40 -0.76 8.48 16
25 O -0.58 -9.94 17.29 5.29 0.09 -9.84 16
26 N -0.71 -8.02 5.63 -59.33 -0.33 -8.35 16
27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16
28 H 0.07 0.18 5.94 -51.93 -0.31 -0.13 16
29 H 0.08 0.31 7.89 -51.93 -0.41 -0.10 16
30 H 0.09 1.22 7.42 -51.92 -0.39 0.83 16
31 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16
32 H 0.37 4.32 9.05 45.56 0.41 4.74 16
33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
34 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
35 H 0.39 10.85 7.54 -40.82 -0.31 10.54 16
36 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16
37 H 0.09 0.51 7.72 -51.93 -0.40 0.11 16
38 H 0.09 0.27 8.11 -51.93 -0.42 -0.15 16
39 H 0.09 0.70 7.52 -51.93 -0.39 0.31 16
40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
41 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
42 H 0.44 4.80 8.96 -40.82 -0.37 4.44 16
LS Contribution 353.19 15.07 5.32 5.32
Total: -1.00 -39.68 353.19 -6.70 -46.38
By element:
Atomic # 1 Polarization: 16.47 SS G_CDS: -5.44 Total: 11.02 kcal
Atomic # 6 Polarization: 15.29 SS G_CDS: -0.21 Total: 15.09 kcal
Atomic # 7 Polarization: -67.30 SS G_CDS: -1.08 Total: -68.38 kcal
Atomic # 8 Polarization: -26.81 SS G_CDS: -0.26 Total: -27.08 kcal
Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -39.68 -6.70 -46.38 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755784650.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.815 kcal
(2) G-P(sol) polarization free energy of solvation -39.678 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.493 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.190 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds