Wall clock time and date at job start Tue Mar 31 2020 04:21:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.46494 * 119.99669 * 2 1
4 4 C 1.53002 * 109.47345 * 269.99866 * 3 2 1
5 5 H 1.09002 * 109.47070 * 305.00306 * 4 3 2
6 6 O 1.42903 * 109.46923 * 65.00471 * 4 3 2
7 7 C 1.53000 * 109.47233 * 184.99932 * 4 3 2
8 8 N 1.46500 * 109.47023 * 180.02562 * 7 4 3
9 9 C 1.36942 * 120.00064 * 180.02562 * 8 7 4
10 10 H 1.08003 * 119.99604 * 0.02562 * 9 8 7
11 11 C 1.38806 * 119.99823 * 179.97438 * 9 8 7
12 12 N 1.31622 * 120.00531 * 0.02562 * 11 9 8
13 13 Si 1.86808 * 119.99752 * 179.97438 * 11 9 8
14 14 H 1.48494 * 109.46846 * 0.02562 * 13 11 9
15 15 H 1.48498 * 109.47166 * 120.00071 * 13 11 9
16 16 H 1.48499 * 109.46858 * 240.00004 * 13 11 9
17 17 C 1.34773 * 120.00003 * 180.02562 * 2 1 3
18 18 O 1.21283 * 120.00058 * 179.97438 * 17 2 1
19 19 C 1.50700 * 120.00384 * 0.02562 * 17 2 1
20 20 H 1.08998 * 110.48787 * 38.75142 * 19 17 2
21 21 C 1.54102 * 110.54603 * 275.89721 * 19 17 2
22 22 N 1.47052 * 103.86224 * 241.40346 * 21 19 17
23 23 C 1.46505 * 125.41310 * 180.02562 * 22 21 19
24 24 C 1.33943 * 109.18054 * 359.97438 * 22 21 19
25 25 O 1.21586 * 123.04735 * 179.97438 * 24 22 21
26 26 N 1.33951 * 113.91692 * 0.02562 * 24 22 21
27 27 H 1.09001 * 109.47004 * 90.00384 * 1 2 3
28 28 H 1.09003 * 109.46690 * 209.99559 * 1 2 3
29 29 H 1.09000 * 109.47243 * 329.99587 * 1 2 3
30 30 H 1.09008 * 109.47020 * 150.00097 * 3 2 1
31 31 H 1.08997 * 109.47417 * 30.00091 * 3 2 1
32 32 H 0.96700 * 114.00234 * 59.99815 * 6 4 3
33 33 H 1.08992 * 109.47399 * 300.00166 * 7 4 3
34 34 H 1.09004 * 109.46724 * 60.00652 * 7 4 3
35 35 H 0.97004 * 120.00031 * 359.97438 * 8 7 4
36 36 H 0.96997 * 120.00209 * 179.97438 * 12 11 9
37 37 H 1.09002 * 110.55194 * 359.97438 * 21 19 17
38 38 H 1.09004 * 110.54862 * 122.81017 * 21 19 17
39 39 H 1.09000 * 109.47254 * 179.97438 * 23 22 21
40 40 H 1.08998 * 109.46875 * 299.97615 * 23 22 21
41 41 H 1.09000 * 109.46751 * 59.97421 * 23 22 21
42 42 H 0.97004 * 125.41529 * 180.02562 * 26 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1974 1.2687 0.0000
4 6 2.4525 1.7104 -1.4425
5 1 2.9642 0.9131 -1.9815
6 8 1.2060 1.9936 -2.0814
7 6 3.3237 2.9682 -1.4443
8 7 3.5673 3.3914 -2.8255
9 6 4.3282 4.5019 -3.0773
10 1 4.7489 5.0653 -2.2575
11 6 4.5594 4.9026 -4.3859
12 7 4.0471 4.2156 -5.3850
13 14 5.5967 6.4178 -4.7293
14 1 6.0515 7.0077 -3.4447
15 1 6.7782 6.0347 -5.5433
16 1 4.7855 7.4148 -5.4729
17 6 2.1389 -1.1672 -0.0005
18 8 3.3517 -1.1672 -0.0010
19 6 1.3855 -2.4723 -0.0017
20 1 0.5054 -2.4042 -0.6411
21 6 0.9861 -2.8676 1.4333
22 7 1.6762 -4.1477 1.6511
23 6 1.6172 -4.9459 2.8781
24 6 2.3664 -4.4687 0.5490
25 8 3.0321 -5.4817 0.4551
26 7 2.2578 -3.5720 -0.4402
27 1 -0.3633 -0.0001 -1.0277
28 1 -0.3633 -0.8901 0.5138
29 1 -0.3634 0.8899 0.5139
30 1 3.1499 1.1384 0.5139
31 1 1.6084 2.0283 0.5138
32 1 0.6954 2.6950 -1.6542
33 1 2.8120 3.7654 -0.9053
34 1 4.2745 2.7522 -0.9570
35 1 3.1903 2.8847 -3.5617
36 1 4.2084 4.4958 -6.2994
37 1 1.3332 -2.1201 2.1467
38 1 -0.0936 -2.9974 1.5079
39 1 2.2233 -5.8437 2.7571
40 1 2.0005 -4.3585 3.7124
41 1 0.5838 -5.2294 3.0778
42 1 2.6860 -3.6377 -1.3081
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001755784650.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:21:00
Heat of formation + Delta-G solvation = -105.084431 kcal
Electronic energy + Delta-G solvation = -24873.599910 eV
Core-core repulsion = 21081.841884 eV
Total energy + Delta-G solvation = -3791.758026 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 300.163 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-42.50226 -40.70596 -38.84802 -37.41981 -36.47767 -35.80633 -35.13126 -33.24938
-31.57351 -30.12779 -28.28327 -27.82366 -26.80805 -25.11168 -23.98966 -22.68892
-21.66530 -20.63188 -19.26232 -18.85155 -18.61063 -17.82508 -17.33873 -17.05817
-16.87971 -16.46144 -16.31627 -16.03234 -15.48525 -15.26154 -15.12086 -14.92348
-14.63362 -14.47653 -14.29338 -13.85673 -13.67139 -13.46016 -13.21812 -13.12659
-12.99055 -12.96676 -12.80531 -12.52657 -12.15654 -12.01104 -11.83616 -11.58807
-11.40182 -11.15558 -11.01345 -10.41177 -9.61575 -9.57890 -9.03650 -7.96898
-5.27014 1.25500 1.45299 1.47180 1.57038 1.61004 1.75328 2.08379
2.53793 2.86065 3.23032 3.32880 3.34977 3.49989 3.77018 3.84173
4.00492 4.08988 4.18070 4.34927 4.44163 4.48844 4.53137 4.58123
4.71709 4.73232 4.81641 4.87231 4.91516 4.94376 5.12361 5.21354
5.44588 5.48367 5.60027 5.94459 6.24103 6.26688 6.36507 6.92725
7.03551 7.30524 7.39563 8.06728 8.29163 9.26761
Molecular weight = 300.16amu
Principal moments of inertia in cm(-1)
A = 0.029596 B = 0.002754 C = 0.002649
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 945.838934 B =10164.524083 C =10568.236863
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.065 3.935
2 N -0.595 5.595
3 C 0.097 3.903
4 C 0.105 3.895
5 H 0.059 0.941
6 O -0.559 6.559
7 C 0.122 3.878
8 N -0.742 5.742
9 C -0.247 4.247
10 H 0.078 0.922
11 C -0.079 4.079
12 N -0.970 5.970
13 Si 0.977 3.023
14 H -0.264 1.264
15 H -0.296 1.296
16 H -0.290 1.290
17 C 0.493 3.507
18 O -0.578 6.578
19 C 0.107 3.893
20 H 0.155 0.845
21 C 0.110 3.890
22 N -0.636 5.636
23 C 0.113 3.887
24 C 0.691 3.309
25 O -0.636 6.636
26 N -0.721 5.721
27 H 0.064 0.936
28 H 0.101 0.899
29 H 0.098 0.902
30 H 0.075 0.925
31 H 0.124 0.876
32 H 0.385 0.615
33 H 0.043 0.957
34 H 0.019 0.981
35 H 0.374 0.626
36 H 0.251 0.749
37 H 0.093 0.907
38 H 0.146 0.854
39 H 0.064 0.936
40 H 0.077 0.923
41 H 0.095 0.905
42 H 0.431 0.569
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.249 -12.683 20.288 29.496
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 N -0.327 5.327
3 C -0.027 4.027
4 C 0.044 3.956
5 H 0.078 0.922
6 O -0.366 6.366
7 C -0.005 4.005
8 N -0.385 5.385
9 C -0.378 4.378
10 H 0.096 0.904
11 C -0.271 4.271
12 N -0.621 5.621
13 Si 0.805 3.195
14 H -0.188 1.188
15 H -0.223 1.223
16 H -0.217 1.217
17 C 0.279 3.721
18 O -0.456 6.456
19 C -0.002 4.002
20 H 0.172 0.828
21 C -0.013 4.013
22 N -0.375 5.375
23 C -0.028 4.028
24 C 0.391 3.609
25 O -0.518 6.518
26 N -0.380 5.380
27 H 0.083 0.917
28 H 0.120 0.880
29 H 0.117 0.883
30 H 0.094 0.906
31 H 0.142 0.858
32 H 0.234 0.766
33 H 0.061 0.939
34 H 0.037 0.963
35 H 0.206 0.794
36 H 0.060 0.940
37 H 0.111 0.889
38 H 0.163 0.837
39 H 0.083 0.917
40 H 0.096 0.904
41 H 0.114 0.886
42 H 0.273 0.727
Dipole moment (debyes) X Y Z Total
from point charges -16.044 -13.592 20.121 29.103
hybrid contribution 1.125 1.122 -1.159 1.967
sum -14.919 -12.470 18.962 27.159
Atomic orbital electron populations
1.22288 0.75866 1.05804 1.03614 1.47804 1.09050 1.04338 1.71463
1.22083 0.99057 0.86149 0.95434 1.22157 0.84635 0.95097 0.93731
0.92239 1.86582 1.31801 1.59897 1.58302 1.21453 0.97068 0.95289
0.86730 1.42478 1.61538 1.31621 1.02861 1.19702 1.23004 1.02993
0.92144 0.90429 1.25651 1.03095 1.02797 0.95549 1.69858 1.51087
1.42791 0.98363 0.85026 0.77640 0.78847 0.77945 1.18789 1.22303
1.21662 1.21397 0.87854 0.86665 0.76150 1.90770 1.16260 1.87736
1.50878 1.22196 0.94150 0.84281 0.99592 0.82798 1.22604 1.01148
0.85242 0.92324 1.47203 1.51278 1.24483 1.14549 1.21648 1.03988
0.94722 0.82403 1.16183 0.79950 0.82887 0.81841 1.90909 1.48065
1.29753 1.83119 1.44987 1.53967 1.21807 1.17270 0.91738 0.88008
0.88321 0.90609 0.85842 0.76599 0.93875 0.96328 0.79403 0.94010
0.88872 0.83682 0.91720 0.90444 0.88645 0.72741
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.41 9.56 127.77 1.22 1.63 16
2 N -0.60 -9.89 2.84 -846.75 -2.40 -12.29 16
3 C 0.10 2.04 5.11 86.38 0.44 2.48 16
4 C 0.10 3.24 3.30 30.60 0.10 3.34 16
5 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16
6 O -0.56 -16.22 12.64 -148.98 -1.88 -18.11 16
7 C 0.12 4.72 5.92 86.38 0.51 5.24 16
8 N -0.74 -38.78 5.49 -343.45 -1.89 -40.67 16
9 C -0.25 -14.05 9.99 84.03 0.84 -13.22 16
10 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16
11 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16
12 N -0.97 -61.27 13.06 21.65 0.28 -60.99 16
13 Si 0.98 46.85 29.55 68.60 2.03 48.88 16
14 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16
15 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16
16 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16
17 C 0.49 10.78 6.78 87.66 0.59 11.38 16
18 O -0.58 -19.59 16.18 -3.04 -0.05 -19.64 16
19 C 0.11 1.52 3.17 44.51 0.14 1.66 16
20 H 0.15 1.04 7.20 -2.39 -0.02 1.03 16
21 C 0.11 0.94 6.44 86.65 0.56 1.50 16
22 N -0.64 -10.71 3.36 -863.43 -2.90 -13.61 16
23 C 0.11 1.28 11.22 127.77 1.43 2.71 16
24 C 0.69 18.24 8.60 179.57 1.54 19.79 16
25 O -0.64 -22.89 17.29 -3.99 -0.07 -22.96 16
26 N -0.72 -16.17 5.63 -460.35 -2.59 -18.76 16
27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16
28 H 0.10 -0.08 5.94 -2.39 -0.01 -0.09 16
29 H 0.10 0.25 7.89 -2.39 -0.02 0.23 16
30 H 0.08 1.92 7.42 -2.38 -0.02 1.91 16
31 H 0.12 1.63 7.89 -2.39 -0.02 1.61 16
32 H 0.39 7.98 9.05 -74.06 -0.67 7.31 16
33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16
34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16
35 H 0.37 21.44 7.54 -92.71 -0.70 20.74 16
36 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16
37 H 0.09 0.73 7.72 -2.39 -0.02 0.71 16
38 H 0.15 -0.13 8.11 -2.39 -0.02 -0.15 16
39 H 0.06 1.05 7.52 -2.39 -0.02 1.03 16
40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16
41 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16
42 H 0.43 10.07 8.96 -92.71 -0.83 9.23 16
Total: -1.00 -92.36 353.19 -2.75 -95.11
By element:
Atomic # 1 Polarization: 31.83 SS G_CDS: -1.13 Total: 30.70 kcal
Atomic # 6 Polarization: 24.48 SS G_CDS: 7.85 Total: 32.33 kcal
Atomic # 7 Polarization: -136.82 SS G_CDS: -9.50 Total: -146.32 kcal
Atomic # 8 Polarization: -58.70 SS G_CDS: -2.00 Total: -60.70 kcal
Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal
Total: -92.36 -2.75 -95.11 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755784650.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.978 kcal
(2) G-P(sol) polarization free energy of solvation -92.357 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.335 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.750 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.107 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.084 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds