Wall clock time and date at job start Tue Mar 31 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00367 * 2 1 4 4 C 1.53003 * 109.47413 * 89.99558 * 3 2 1 5 5 O 1.42900 * 109.46759 * 65.00251 * 4 3 2 6 6 C 1.42901 * 114.00260 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47512 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47172 * 64.99702 * 7 6 5 9 9 C 1.36942 * 119.99998 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00073 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00116 * 180.02562 * 9 8 7 12 12 N 1.31620 * 119.99635 * 359.97438 * 11 9 8 13 13 Si 1.86791 * 120.00238 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46949 * 90.00011 * 13 11 9 15 15 H 1.48499 * 109.47530 * 209.99687 * 13 11 9 16 16 H 1.48502 * 109.47102 * 330.00276 * 13 11 9 17 17 C 1.34774 * 120.00218 * 179.97438 * 2 1 3 18 18 O 1.21580 * 120.00265 * 185.28400 * 17 2 1 19 19 C 1.47627 * 119.99808 * 5.28083 * 17 2 1 20 20 N 1.31870 * 126.45260 * 5.45956 * 19 17 2 21 21 N 1.28477 * 110.14714 * 179.85454 * 20 19 17 22 22 H 0.97007 * 124.92701 * 180.17118 * 21 20 19 23 23 C 1.35720 * 110.13510 * 0.41858 * 21 20 19 24 24 C 1.35540 * 107.11875 * 359.74809 * 23 21 20 25 25 F 1.35108 * 127.24725 * 179.97438 * 24 23 21 26 26 H 1.09004 * 109.46836 * 95.28870 * 1 2 3 27 27 H 1.08993 * 109.47428 * 215.28900 * 1 2 3 28 28 H 1.09001 * 109.46920 * 335.29137 * 1 2 3 29 29 H 1.08999 * 109.47813 * 209.99669 * 3 2 1 30 30 H 1.09001 * 109.47435 * 330.00332 * 3 2 1 31 31 H 1.08994 * 109.47585 * 185.00409 * 4 3 2 32 32 H 1.09001 * 109.47060 * 305.00815 * 4 3 2 33 33 H 1.09002 * 109.46943 * 300.00354 * 6 5 4 34 34 H 1.09002 * 109.47247 * 59.99670 * 6 5 4 35 35 H 1.09002 * 109.47506 * 184.99680 * 7 6 5 36 36 H 1.09006 * 109.47157 * 304.99565 * 7 6 5 37 37 H 0.96996 * 119.99772 * 0.02562 * 8 7 6 38 38 H 0.97001 * 119.99966 * 179.97438 * 12 11 9 39 39 H 1.08003 * 126.44213 * 179.71400 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 8 3.3209 0.7725 2.0814 6 6 3.6240 1.0933 3.4405 7 6 4.5560 0.0277 4.0206 8 7 5.8405 0.0672 3.3173 9 6 6.8393 -0.8022 3.6664 10 1 6.6802 -1.5167 4.4604 11 6 8.0567 -0.7644 3.0004 12 7 8.2507 0.1067 2.0330 13 14 9.4193 -1.9498 3.4770 14 1 9.2993 -3.1916 2.6715 15 1 10.7381 -1.3178 3.2188 16 1 9.3038 -2.2825 4.9197 17 6 2.1389 -1.1672 0.0005 18 8 3.3508 -1.1694 0.0975 19 6 1.4055 -2.4430 -0.1166 20 7 0.1117 -2.5865 -0.3280 21 7 -0.1928 -3.8336 -0.3781 22 1 -1.0860 -4.1817 -0.5266 23 6 0.9157 -4.5932 -0.1877 24 6 1.9574 -3.7431 -0.0169 25 9 3.2504 -4.0678 0.2027 26 1 -0.3633 -0.0947 -1.0233 27 1 -0.3634 -0.8388 0.5936 28 1 -0.3633 0.9336 0.4296 29 1 3.1500 1.1384 -0.5138 30 1 1.6085 2.0284 -0.5138 31 1 2.9181 2.6960 1.4438 32 1 1.5062 1.7549 1.9815 33 1 4.1137 2.0662 3.4837 34 1 2.7018 1.1248 4.0208 35 1 4.7162 0.2231 5.0809 36 1 4.1041 -0.9566 3.8968 37 1 5.9835 0.7091 2.6044 38 1 9.1015 0.1334 1.5678 39 1 0.9594 -5.6723 -0.1741 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755876948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:37 Heat of formation + Delta-G solvation = -45.154380 kcal Electronic energy + Delta-G solvation = -24945.922161 eV Core-core repulsion = 21033.302591 eV Total energy + Delta-G solvation = -3912.619570 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.70160 -43.70390 -40.61481 -38.88629 -36.80217 -36.12968 -33.53146 -32.99813 -31.68988 -30.88623 -29.21294 -27.57238 -25.64006 -25.38663 -23.36412 -22.79255 -22.66223 -20.59983 -19.49215 -19.24517 -18.15417 -17.64648 -17.54907 -17.20645 -16.94246 -16.84617 -16.35190 -16.14681 -15.98919 -15.60142 -15.33303 -15.07487 -14.61655 -14.51481 -14.19089 -13.87357 -13.74815 -13.31053 -13.18371 -12.92598 -12.76521 -12.62808 -12.47963 -12.11879 -11.90920 -11.88801 -11.65877 -11.12756 -10.96440 -10.58160 -10.40218 -10.04726 -9.58513 -8.97126 -7.91576 -5.20469 0.35587 0.80074 1.42681 1.49130 1.56072 1.71196 2.04960 2.27861 2.57364 2.88792 3.03679 3.41528 3.59965 3.81626 3.88821 3.96722 4.10234 4.24320 4.32336 4.37931 4.41660 4.47209 4.49830 4.61111 4.63234 4.81493 4.95760 4.96963 5.04439 5.11694 5.19758 5.46074 5.63727 5.93524 6.29030 6.35760 6.51989 6.60866 7.24163 7.34720 8.12043 8.36394 9.32814 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.004677 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.240840 B = 5985.022923 C = 7358.334555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.601 5.601 3 C 0.119 3.881 4 C 0.036 3.964 5 O -0.393 6.393 6 C 0.066 3.934 7 C 0.152 3.848 8 N -0.738 5.738 9 C -0.249 4.249 10 H 0.073 0.927 11 C -0.080 4.080 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.292 1.292 15 H -0.288 1.288 16 H -0.263 1.263 17 C 0.577 3.423 18 O -0.549 6.549 19 C -0.055 4.055 20 N -0.219 5.219 21 N -0.343 5.343 22 H 0.479 0.521 23 C 0.008 3.992 24 C -0.024 4.024 25 F -0.130 7.130 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.142 0.858 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.004 0.996 37 H 0.373 0.627 38 H 0.250 0.750 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.623 -4.005 -6.203 29.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.334 5.334 3 C -0.003 4.003 4 C -0.042 4.042 5 O -0.313 6.313 6 C -0.010 4.010 7 C 0.025 3.975 8 N -0.380 5.380 9 C -0.381 4.381 10 H 0.091 0.909 11 C -0.272 4.272 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.219 1.219 15 H -0.215 1.215 16 H -0.188 1.188 17 C 0.363 3.637 18 O -0.424 6.424 19 C -0.214 4.214 20 N -0.058 5.058 21 N -0.063 5.063 22 H 0.331 0.669 23 C -0.139 4.139 24 C -0.053 4.053 25 F -0.109 7.109 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.205 0.795 38 H 0.059 0.941 39 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -28.766 -3.658 -6.278 29.669 hybrid contribution 1.763 -0.820 0.089 1.947 sum -27.003 -4.478 -6.189 28.062 Atomic orbital electron populations 1.22127 0.76240 1.04182 1.03237 1.47641 1.08631 1.04496 1.72665 1.21699 0.97695 0.85397 0.95531 1.23153 0.93987 0.92734 0.94283 1.88248 1.67948 1.49661 1.25397 1.22622 0.97777 0.97252 0.83378 1.20835 0.85575 0.96200 0.94886 1.42447 1.10979 1.42230 1.42352 1.19676 0.92907 1.11394 1.14086 0.90898 1.25666 1.00802 1.01713 0.98970 1.69872 1.24846 1.40134 1.27244 0.85070 0.78258 0.77853 0.78170 1.21910 1.21451 1.18789 1.17346 0.85986 0.83226 0.77142 1.91009 1.15296 1.86727 1.49326 1.22059 0.91584 0.94407 1.13373 1.73758 1.12551 1.01663 1.17782 1.43300 1.11585 1.02150 1.49264 0.66907 1.23196 0.84366 1.00540 1.05757 1.17954 0.81083 0.93182 1.13106 1.91503 1.33732 1.92561 1.93102 0.91095 0.90443 0.88663 0.92692 0.84056 0.91499 0.91173 0.93270 0.90468 0.93610 0.97851 0.79524 0.94123 0.73820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.41 9.32 127.77 1.19 2.60 16 2 N -0.60 -16.89 2.86 -850.45 -2.43 -19.32 16 3 C 0.12 3.20 5.82 86.38 0.50 3.70 16 4 C 0.04 1.02 6.28 71.98 0.45 1.47 16 5 O -0.39 -16.56 8.85 -136.34 -1.21 -17.77 16 6 C 0.07 2.56 6.07 71.98 0.44 2.99 16 7 C 0.15 7.33 6.65 86.38 0.57 7.90 16 8 N -0.74 -44.70 5.55 -343.45 -1.91 -46.60 16 9 C -0.25 -16.03 9.99 84.03 0.84 -15.19 16 10 H 0.07 4.48 7.83 -2.91 -0.02 4.46 16 11 C -0.08 -5.17 5.50 84.86 0.47 -4.70 16 12 N -0.97 -66.75 13.06 21.65 0.28 -66.47 16 13 Si 0.98 51.36 29.55 68.60 2.03 53.38 16 14 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 15 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 16 H -0.26 -12.82 7.11 99.48 0.71 -12.11 16 17 C 0.58 22.07 7.36 86.72 0.64 22.71 16 18 O -0.55 -28.56 15.25 8.67 0.13 -28.42 16 19 C -0.05 -1.68 6.76 42.45 0.29 -1.39 16 20 N -0.22 -4.26 8.98 -48.15 -0.43 -4.69 16 21 N -0.34 -3.64 6.86 -57.00 -0.39 -4.03 16 22 H 0.48 -0.19 8.96 -219.98 -1.97 -2.16 16 23 C 0.01 0.11 12.06 83.47 1.01 1.12 16 24 C -0.02 -0.72 8.03 22.47 0.18 -0.54 16 25 F -0.13 -5.25 17.05 44.97 0.77 -4.48 16 26 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.08 1.38 5.91 -2.39 -0.01 1.36 16 28 H 0.09 1.04 8.03 -2.39 -0.02 1.02 16 29 H 0.05 1.94 7.50 -2.39 -0.02 1.92 16 30 H 0.14 2.23 8.07 -2.39 -0.02 2.21 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 37 H 0.37 24.26 7.67 -92.71 -0.71 23.55 16 38 H 0.25 16.48 8.31 -92.71 -0.77 15.71 16 39 H 0.25 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -100.65 340.50 1.83 -98.82 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -1.59 Total: 18.89 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 6.57 Total: 20.69 kcal Atomic # 7 Polarization: -136.23 SS G_CDS: -4.88 Total: -141.11 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -1.08 Total: -46.19 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.77 Total: -4.48 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.03 Total: 53.38 kcal Total: -100.65 1.83 -98.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755876948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.666 kcal (2) G-P(sol) polarization free energy of solvation -100.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds