Wall clock time and date at job start Tue Mar 31 2020 05:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.08999 * 112.84699 * 309.38839 * 5 3 2 7 7 C 1.53784 * 113.61671 * 80.58076 * 5 3 2 8 8 C 1.54052 * 86.98274 * 89.16537 * 7 5 3 9 9 H 1.09007 * 113.68754 * 270.87160 * 8 7 5 10 10 N 1.46901 * 113.61873 * 139.98026 * 8 7 5 11 11 C 1.46902 * 110.99933 * 107.50178 * 10 8 7 12 12 C 1.52998 * 109.47058 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.47280 * 59.99901 * 12 11 10 14 14 O 1.42906 * 109.47142 * 300.00009 * 12 11 10 15 15 C 1.53000 * 109.47070 * 180.02562 * 12 11 10 16 16 N 1.46907 * 109.47228 * 184.99933 * 15 12 11 17 17 C 1.46905 * 110.99547 * 66.04152 * 16 15 12 18 18 C 1.46893 * 111.00129 * 189.99712 * 16 15 12 19 19 C 1.50703 * 109.46964 * 169.99927 * 18 16 15 20 20 H 1.07995 * 120.00318 * 359.97438 * 19 18 16 21 21 C 1.37877 * 119.99750 * 180.02562 * 19 18 16 22 22 N 1.31516 * 120.00386 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99868 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46991 * 59.99866 * 23 21 19 25 25 H 1.48501 * 109.47124 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47146 * 299.99748 * 23 21 19 27 27 C 1.53776 * 113.61785 * 178.19284 * 5 3 2 28 28 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 29 29 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 30 30 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 31 31 H 1.08994 * 113.61573 * 203.66777 * 7 5 3 32 32 H 1.09000 * 113.61330 * 334.57444 * 7 5 3 33 33 H 1.00900 * 110.99988 * 343.55112 * 10 8 7 34 34 H 1.09000 * 109.47282 * 300.00385 * 11 10 8 35 35 H 1.08998 * 109.47156 * 59.99993 * 11 10 8 36 36 H 0.96692 * 114.00232 * 300.00234 * 14 12 11 37 37 H 1.08997 * 109.46856 * 304.99571 * 15 12 11 38 38 H 1.08998 * 109.47544 * 64.99883 * 15 12 11 39 39 H 1.08999 * 109.47357 * 60.00683 * 17 16 15 40 40 H 1.09000 * 109.46405 * 180.02562 * 17 16 15 41 41 H 1.09001 * 109.47327 * 299.99884 * 17 16 15 42 42 H 1.08995 * 109.47150 * 289.99923 * 18 16 15 43 43 H 1.08998 * 109.46881 * 49.99777 * 18 16 15 44 44 H 0.96992 * 120.00452 * 180.02562 * 22 21 19 45 45 H 1.08999 * 113.61811 * 25.42982 * 27 5 3 46 46 H 1.08999 * 113.61452 * 156.25132 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 4.0256 0.6590 0.7668 7 6 4.1877 1.0800 -1.3993 8 6 4.0538 2.6037 -1.5828 9 1 3.0991 2.9113 -2.0095 10 7 5.2047 3.2186 -2.2575 11 6 4.8594 3.6186 -3.6282 12 6 6.0804 4.2529 -4.2974 13 1 6.8962 3.5305 -4.3243 14 8 6.4872 5.4033 -3.5536 15 6 5.7205 4.6700 -5.7247 16 7 6.9222 5.1687 -6.4069 17 6 7.9055 4.0935 -6.5943 18 6 6.5773 5.7962 -7.6895 19 6 7.7856 6.5077 -8.2416 20 1 8.7164 6.4955 -7.6942 21 6 7.7023 7.1753 -9.4451 22 7 6.5686 7.1907 -10.1115 23 14 9.2002 8.0567 -10.1299 24 1 10.2982 7.0786 -10.3373 25 1 8.8515 8.6911 -11.4265 26 1 9.6419 9.1006 -9.1704 27 6 4.1075 2.7137 -0.0498 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 5.2204 0.7326 -1.3721 32 1 3.5628 0.5005 -2.0789 33 1 6.0009 2.5989 -2.2515 34 1 4.5494 2.7410 -4.1956 35 1 4.0433 4.3406 -3.6013 36 1 5.8091 6.0895 -3.4883 37 1 5.3260 3.8101 -6.2660 38 1 4.9670 5.4570 -5.6943 39 1 7.4653 3.2996 -7.1976 40 1 8.7853 4.4902 -7.1010 41 1 8.1958 3.6932 -5.6229 42 1 6.2538 5.0296 -8.3936 43 1 5.7709 6.5137 -7.5377 44 1 6.5101 7.6601 -10.9583 45 1 3.4181 3.4522 0.3593 46 1 5.1179 2.8123 0.3470 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596068607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:19 Heat of formation + Delta-G solvation = -106.223680 kcal Electronic energy + Delta-G solvation = -24299.403860 eV Core-core repulsion = 20611.136775 eV Total energy + Delta-G solvation = -3688.267085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30648 -39.12848 -37.93836 -36.68671 -35.54596 -33.78135 -32.49086 -29.70042 -28.55064 -27.12132 -26.31992 -26.07577 -24.96214 -23.31586 -22.04279 -21.29815 -20.15674 -19.75334 -17.92181 -17.04302 -16.72103 -16.57435 -16.32222 -15.70117 -15.61441 -15.14309 -14.76051 -14.33170 -14.24017 -13.90899 -13.60774 -13.53344 -13.20887 -12.99035 -12.87947 -12.59791 -12.41773 -12.11790 -11.89289 -11.79829 -11.32719 -11.22589 -11.09640 -10.95617 -10.94181 -10.87456 -10.75377 -10.68703 -10.65005 -10.25564 -9.95263 -9.53283 -9.08420 -8.48967 -8.41469 -7.17979 -6.00762 -4.01809 1.76703 2.26283 3.35764 3.39227 3.42962 3.82948 4.03971 4.07433 4.31680 4.43654 4.50018 4.67917 4.74762 4.78057 4.81516 4.89892 5.07036 5.11059 5.19075 5.31225 5.31771 5.33891 5.39419 5.53056 5.59684 5.64030 5.72708 5.74179 5.84730 6.00266 6.06904 6.20069 6.31070 6.42758 6.77002 6.85542 7.21654 7.29012 7.34032 7.34592 7.82156 8.07161 8.17067 8.23360 8.57378 9.05932 9.62228 11.10165 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.036061 B = 0.002127 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.273837 B =13159.808104 C =13442.413685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.478 3.522 4 O -0.500 6.500 5 C -0.116 4.116 6 H 0.115 0.885 7 C -0.151 4.151 8 C 0.066 3.934 9 H 0.098 0.902 10 N -0.664 5.664 11 C 0.025 3.975 12 C 0.116 3.884 13 H 0.092 0.908 14 O -0.536 6.536 15 C 0.025 3.975 16 N -0.529 5.529 17 C 0.036 3.964 18 C 0.193 3.807 19 C -0.506 4.506 20 H 0.064 0.936 21 C 0.053 3.947 22 N -0.901 5.901 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.275 1.275 27 C -0.108 4.108 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.344 0.656 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.369 0.631 37 H 0.026 0.974 38 H 0.070 0.930 39 H 0.007 0.993 40 H 0.075 0.925 41 H 0.046 0.954 42 H -0.011 1.011 43 H 0.028 0.972 44 H 0.261 0.739 45 H 0.084 0.916 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.421 -16.358 20.928 28.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.320 3.680 4 O -0.387 6.387 5 C -0.135 4.135 6 H 0.133 0.867 7 C -0.191 4.191 8 C -0.045 4.045 9 H 0.116 0.884 10 N -0.293 5.293 11 C -0.105 4.105 12 C 0.056 3.944 13 H 0.110 0.890 14 O -0.340 6.340 15 C -0.105 4.105 16 N -0.254 5.254 17 C -0.112 4.112 18 C 0.068 3.932 19 C -0.544 4.544 20 H 0.082 0.918 21 C -0.148 4.148 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.201 1.201 27 C -0.146 4.146 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.215 0.785 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.006 0.994 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.079 -15.324 21.340 27.797 hybrid contribution -0.621 -0.815 -1.561 1.867 sum -9.700 -16.139 19.780 27.309 Atomic orbital electron populations 1.23300 0.76127 1.03816 1.02707 1.86503 1.23555 1.33413 1.84029 1.23241 0.91358 0.81309 0.72082 1.90687 1.66928 1.36344 1.44754 1.21942 0.87569 1.02326 1.01702 0.86654 1.23765 1.01948 0.99184 0.94160 1.23210 0.95186 0.90900 0.95188 0.88409 1.60272 1.06119 1.45829 1.17123 1.22787 0.99436 0.99632 0.88671 1.21878 0.94966 0.88298 0.89258 0.89001 1.86580 1.43724 1.28825 1.74842 1.22732 0.94575 0.98707 0.94519 1.62026 1.09642 1.28121 1.25564 1.22258 0.97630 0.92635 0.98718 1.19736 0.97134 0.93277 0.83064 1.21136 0.97161 1.31874 1.04246 0.91824 1.25004 0.96224 0.96632 0.96892 1.69948 1.25102 1.43536 1.15458 0.86537 0.82796 0.79911 0.78024 1.20308 1.21412 1.20094 1.23067 1.02133 0.92923 0.96459 0.91794 0.91769 0.87982 0.88037 0.90803 0.83695 0.94601 0.90612 0.78491 0.95603 0.91117 0.97412 0.90657 0.93520 0.99365 0.95361 0.92913 0.89726 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.05 10.57 -39.26 -0.41 -3.47 16 3 C 0.48 4.53 7.20 36.00 0.26 4.79 16 4 O -0.50 -6.12 15.58 -18.76 -0.29 -6.42 16 5 C -0.12 -0.84 4.45 -90.96 -0.40 -1.24 16 6 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 7 C -0.15 -1.05 7.29 -25.77 -0.19 -1.24 16 8 C 0.07 0.60 3.86 -66.76 -0.26 0.34 16 9 H 0.10 1.03 7.86 -51.92 -0.41 0.63 16 10 N -0.66 -6.77 6.49 -105.71 -0.69 -7.46 16 11 C 0.02 0.28 5.19 -3.82 -0.02 0.26 16 12 C 0.12 1.66 3.13 -26.73 -0.08 1.58 16 13 H 0.09 1.33 6.34 -51.93 -0.33 1.00 16 14 O -0.54 -8.54 13.15 -35.23 -0.46 -9.00 16 15 C 0.02 0.43 4.59 -3.82 -0.02 0.41 16 16 N -0.53 -11.59 4.70 -244.37 -1.15 -12.74 16 17 C 0.04 0.72 9.14 60.07 0.55 1.27 16 18 C 0.19 5.11 4.72 -4.98 -0.02 5.08 16 19 C -0.51 -14.45 8.46 -34.44 -0.29 -14.75 16 20 H 0.06 1.81 7.12 -52.49 -0.37 1.43 16 21 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 22 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 23 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.11 -0.89 7.26 -25.92 -0.19 -1.07 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.56 7.83 -51.93 -0.41 0.16 16 32 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.34 3.18 8.20 -39.29 -0.32 2.86 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 36 H 0.37 5.00 9.04 45.56 0.41 5.41 16 37 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 38 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 39 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 41 H 0.05 0.80 6.37 -51.93 -0.33 0.47 16 42 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 43 H 0.03 0.80 7.93 -51.93 -0.41 0.38 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.08 0.82 7.42 -51.93 -0.39 0.44 16 46 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -33.44 376.50 -8.41 -41.85 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.10 Total: 2.81 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 0.30 Total: -1.86 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -1.10 Total: -46.50 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -1.17 Total: -18.89 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.44 -8.41 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596068607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.376 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds