Wall clock time and date at job start Tue Mar 31 2020 03:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46876 * 2 1 4 4 C 1.52996 * 109.47064 * 119.99983 * 2 1 3 5 5 H 1.09005 * 109.47090 * 179.79963 * 4 2 1 6 6 O 1.42902 * 109.47170 * 299.79965 * 4 2 1 7 7 C 1.50697 * 109.47274 * 59.80599 * 4 2 1 8 8 O 1.21283 * 119.99499 * 241.31129 * 7 4 2 9 9 N 1.34777 * 120.00559 * 61.30556 * 7 4 2 10 10 C 1.46493 * 120.00504 * 175.64736 * 9 7 4 11 11 C 1.52995 * 109.47575 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.40039 * 304.83236 * 11 10 9 13 13 C 1.54290 * 109.40742 * 185.00032 * 11 10 9 14 14 N 1.48182 * 110.69607 * 200.48898 * 13 11 10 15 15 C 1.36929 * 118.51635 * 138.76655 * 14 13 11 16 16 H 1.07998 * 120.00288 * 321.23489 * 15 14 13 17 17 C 1.38810 * 120.00133 * 141.22898 * 15 14 13 18 18 N 1.31623 * 120.00381 * 160.56506 * 17 15 14 19 19 Si 1.86802 * 119.99995 * 340.56844 * 17 15 14 20 20 H 1.48496 * 109.47280 * 91.97113 * 19 17 15 21 21 H 1.48498 * 109.47404 * 211.97642 * 19 17 15 22 22 H 1.48508 * 109.46971 * 331.97455 * 19 17 15 23 23 C 1.44459 * 122.96911 * 318.79925 * 14 13 11 24 24 C 1.54868 * 109.33549 * 88.90930 * 23 14 13 25 25 C 1.47692 * 109.67994 * 290.10220 * 24 23 14 26 26 O 1.40522 * 109.40769 * 64.59005 * 11 10 9 27 27 H 1.08992 * 109.47450 * 60.00021 * 1 2 3 28 28 H 1.09003 * 109.46935 * 300.00189 * 1 2 3 29 29 H 1.09003 * 109.47178 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46632 * 240.00383 * 2 1 3 31 31 H 1.08997 * 109.47703 * 54.91265 * 3 2 1 32 32 H 1.09002 * 109.46972 * 174.91687 * 3 2 1 33 33 H 1.09001 * 109.47292 * 294.91534 * 3 2 1 34 34 H 0.96698 * 113.99880 * 60.00094 * 6 4 2 35 35 H 0.97000 * 119.99193 * 355.64474 * 9 7 4 36 36 H 1.09004 * 109.47062 * 300.00388 * 10 9 7 37 37 H 1.09001 * 109.47317 * 59.99321 * 10 9 7 38 38 H 1.09004 * 109.23081 * 320.80167 * 13 11 10 39 39 H 1.09003 * 109.23373 * 80.21620 * 13 11 10 40 40 H 0.96997 * 120.00071 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.49339 * 208.86664 * 23 14 13 42 42 H 1.09005 * 109.49659 * 328.94957 * 23 14 13 43 43 H 1.09004 * 109.43566 * 50.16151 * 24 23 14 44 44 H 1.08990 * 109.44196 * 170.07952 * 24 23 14 45 45 H 1.08997 * 108.64437 * 181.87651 * 25 24 23 46 46 H 1.08997 * 108.64173 * 299.71926 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1301 -0.7243 1.2474 6 8 1.5675 -0.0449 2.4160 7 6 1.5338 -2.1406 1.2517 8 8 0.8174 -2.5273 2.1507 9 7 1.8770 -2.9803 0.2549 10 6 1.4644 -4.3850 0.3056 11 6 1.9800 -5.1133 -0.9371 12 1 1.6354 -4.5929 -1.8308 13 6 1.4399 -6.5586 -0.9454 14 7 2.2708 -7.4232 -1.8159 15 6 2.5710 -8.6881 -1.3859 16 1 2.7946 -8.8655 -0.3443 17 6 2.5877 -9.7424 -2.2886 18 7 3.2278 -10.8534 -1.9913 19 14 1.7018 -9.5845 -3.9256 20 1 2.6450 -9.0719 -4.9516 21 1 1.1918 -10.9153 -4.3429 22 1 0.5640 -8.6407 -3.7837 23 6 2.7790 -6.9918 -3.0975 24 6 4.1542 -6.3075 -2.8997 25 6 3.9714 -5.0126 -2.2135 26 8 3.3850 -5.1286 -0.9201 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6042 1.9820 0.8409 32 1 3.1262 1.4439 0.0911 33 1 1.7529 1.9294 -0.9320 34 1 0.6038 -0.0039 2.4837 35 1 2.3972 -2.6544 -0.4962 36 1 1.8784 -4.8533 1.1987 37 1 0.3763 -4.4433 0.3362 38 1 1.4538 -6.9529 0.0707 39 1 0.4147 -6.5567 -1.3157 40 1 3.2397 -11.5900 -2.6223 41 1 2.8933 -7.8552 -3.7529 42 1 2.0817 -6.2840 -3.5458 43 1 4.7957 -6.9501 -2.2966 44 1 4.6191 -6.1400 -3.8712 45 1 4.9440 -4.5310 -2.1131 46 1 3.3338 -4.3787 -2.8298 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149659727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:50 Heat of formation + Delta-G solvation = -111.474028 kcal Electronic energy + Delta-G solvation = -25951.691704 eV Core-core repulsion = 22263.196947 eV Total energy + Delta-G solvation = -3688.494757 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45813 -39.15560 -37.40618 -35.53652 -34.94108 -34.07367 -32.47899 -31.70901 -29.45446 -27.67324 -27.62642 -25.91836 -25.06819 -22.55213 -21.50413 -21.22604 -20.40520 -19.92432 -18.12270 -16.80111 -16.65756 -16.61425 -16.56039 -15.91342 -15.43622 -15.17151 -14.70578 -14.53392 -14.03583 -13.81148 -13.48680 -13.32984 -13.28802 -12.73626 -12.66587 -12.64269 -12.51189 -12.38825 -12.06672 -11.91896 -11.75385 -11.56246 -11.36289 -11.16553 -11.02108 -10.80038 -10.56806 -10.39324 -10.17745 -9.84072 -9.67641 -9.59734 -9.13665 -9.03068 -8.54930 -6.84536 -5.99660 -3.44425 2.45309 3.00872 3.24561 3.42031 3.45934 3.96503 4.01820 4.28865 4.37643 4.47561 4.51573 4.73071 4.77658 5.10990 5.13604 5.17145 5.22905 5.25903 5.27167 5.40307 5.43811 5.45974 5.48657 5.62177 5.68249 5.69570 5.79672 5.82346 5.88724 5.97061 6.04190 6.17805 6.31961 6.33914 6.47751 6.59855 6.64555 6.95095 7.15467 7.40628 7.70075 8.06660 8.07563 8.36809 8.99420 9.69077 10.03429 11.15865 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.028350 B = 0.003334 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.411148 B = 8396.828501 C = 8649.495238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.124 4.124 3 C -0.142 4.142 4 C 0.096 3.904 5 H 0.125 0.875 6 O -0.535 6.535 7 C 0.484 3.516 8 O -0.535 6.535 9 N -0.718 5.718 10 C 0.121 3.879 11 C 0.065 3.935 12 H 0.055 0.945 13 C 0.132 3.868 14 N -0.598 5.598 15 C -0.268 4.268 16 H 0.078 0.922 17 C 0.034 3.966 18 N -0.903 5.903 19 Si 0.885 3.115 20 H -0.286 1.286 21 H -0.302 1.302 22 H -0.272 1.272 23 C 0.142 3.858 24 C -0.180 4.180 25 C 0.079 3.921 26 O -0.356 6.356 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.380 0.620 35 H 0.400 0.600 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.263 0.737 41 H 0.059 0.941 42 H 0.031 0.969 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.740 23.385 -0.676 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.144 4.144 3 C -0.199 4.199 4 C 0.033 3.967 5 H 0.142 0.858 6 O -0.340 6.340 7 C 0.270 3.730 8 O -0.412 6.412 9 N -0.371 5.371 10 C -0.003 4.003 11 C 0.005 3.995 12 H 0.073 0.927 13 C 0.006 3.994 14 N -0.321 5.321 15 C -0.397 4.397 16 H 0.096 0.904 17 C -0.167 4.167 18 N -0.544 5.544 19 Si 0.716 3.284 20 H -0.214 1.214 21 H -0.230 1.230 22 H -0.197 1.197 23 C 0.015 3.985 24 C -0.220 4.220 25 C 0.002 3.998 26 O -0.274 6.274 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.230 0.770 35 H 0.234 0.766 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.498 22.982 0.248 23.119 hybrid contribution -0.778 -0.144 -1.851 2.013 sum -3.276 22.838 -1.602 23.127 Atomic orbital electron populations 1.21905 0.94424 1.02496 1.02583 1.21788 0.97087 0.97987 0.97490 1.21747 1.01303 0.94662 1.02170 1.21961 1.00489 0.87626 0.86644 0.85784 1.86579 1.27875 1.76925 1.42654 1.21531 0.80955 0.88597 0.81946 1.90728 1.36753 1.77682 1.36042 1.45979 1.56419 1.10486 1.24202 1.21589 0.99780 0.79680 0.99203 1.22794 0.83067 0.97551 0.96087 0.92730 1.21852 0.92623 0.88438 0.96531 1.43797 1.57554 1.12676 1.18048 1.18852 1.42305 0.82094 0.96451 0.90412 1.25476 0.97931 0.95076 0.98168 1.69837 1.41706 1.05961 1.36914 0.86886 0.80927 0.76037 0.84551 1.21415 1.23027 1.19696 1.21155 0.91753 0.96998 0.88592 1.22171 1.01906 0.98174 0.99777 1.21359 0.97372 0.96818 0.84228 1.87450 1.17986 1.94064 1.27911 0.91668 0.92163 0.92240 0.89850 0.91825 0.92304 0.92393 0.77047 0.76604 0.90246 0.90143 0.91326 0.95218 0.92688 0.92377 0.95096 0.90030 0.92121 0.90997 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.64 37.16 0.32 -0.76 16 2 C -0.12 -0.83 2.72 -90.62 -0.25 -1.07 16 3 C -0.14 -0.84 8.97 37.16 0.33 -0.50 16 4 C 0.10 0.87 3.20 -27.89 -0.09 0.78 16 5 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 6 O -0.54 -5.53 12.34 -55.14 -0.68 -6.21 16 7 C 0.48 5.86 5.92 -10.99 -0.07 5.80 16 8 O -0.54 -8.64 16.36 -14.35 -0.23 -8.87 16 9 N -0.72 -8.05 5.42 -60.30 -0.33 -8.37 16 10 C 0.12 1.65 5.24 -4.05 -0.02 1.63 16 11 C 0.07 0.99 2.35 -26.06 -0.06 0.93 16 12 H 0.05 0.74 7.20 -51.93 -0.37 0.36 16 13 C 0.13 2.52 6.12 -2.44 -0.01 2.51 16 14 N -0.60 -13.85 2.17 -171.49 -0.37 -14.22 16 15 C -0.27 -7.44 9.74 -15.06 -0.15 -7.59 16 16 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 17 C 0.03 0.96 5.30 -17.43 -0.09 0.87 16 18 N -0.90 -27.46 13.97 55.49 0.78 -26.69 16 19 Si 0.88 21.99 25.00 -169.99 -4.25 17.74 16 20 H -0.29 -6.82 6.57 56.52 0.37 -6.44 16 21 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.14 2.96 4.41 -4.15 -0.02 2.94 16 24 C -0.18 -3.23 6.03 -28.31 -0.17 -3.40 16 25 C 0.08 1.17 6.04 34.59 0.21 1.37 16 26 O -0.36 -5.94 9.76 -34.09 -0.33 -6.28 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.38 6.78 -51.93 -0.35 0.03 16 29 H 0.06 0.51 7.21 -51.93 -0.37 0.13 16 30 H 0.08 0.48 7.55 -51.93 -0.39 0.09 16 31 H 0.06 0.41 7.83 -51.93 -0.41 0.00 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.38 3.25 7.13 45.56 0.32 3.57 16 35 H 0.40 3.59 7.84 -40.82 -0.32 3.27 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.36 7.75 -51.93 -0.40 0.96 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.06 1.35 2.97 -51.93 -0.15 1.20 16 42 H 0.03 0.58 8.10 -51.93 -0.42 0.15 16 43 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.03 0.43 7.27 -51.93 -0.38 0.05 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -33.55 355.95 -7.19 -40.74 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.07 Total: 3.31 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.06 Total: 3.49 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.08 Total: -49.29 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -1.25 Total: -21.35 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.25 Total: 17.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.55 -7.19 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149659727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.734 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds