Wall clock time and date at job start Tue Mar 31 2020 05:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42901 * 109.46755 * 2 1 4 4 C 1.42904 * 113.99816 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47027 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.46759 * 65.00294 * 5 4 3 7 7 C 1.42901 * 114.00039 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47113 * 180.02562 * 7 6 5 9 9 O 1.21285 * 120.00051 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00080 * 180.02562 * 8 7 6 11 11 C 1.48212 * 119.97183 * 179.97438 * 10 8 7 12 12 C 1.47141 * 110.34359 * 102.46371 * 11 10 8 13 13 C 1.53795 * 111.84200 * 58.29430 * 12 11 10 14 14 N 1.43465 * 107.96321 * 281.67211 * 13 12 11 15 15 C 1.36938 * 118.93969 * 273.62755 * 14 13 12 16 16 H 1.08001 * 119.99818 * 24.96262 * 15 14 13 17 17 C 1.38810 * 119.99832 * 204.95501 * 15 14 13 18 18 N 1.31621 * 120.00139 * 14.65285 * 17 15 14 19 19 Si 1.86798 * 120.00112 * 194.64858 * 17 15 14 20 20 H 1.48504 * 109.46868 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46950 * 120.00172 * 19 17 15 22 22 H 1.48499 * 109.47604 * 240.00420 * 19 17 15 23 23 C 1.48860 * 122.11974 * 93.64990 * 14 13 12 24 24 C 1.43620 * 119.96968 * 359.71890 * 10 8 7 25 25 H 1.08992 * 109.47149 * 299.99952 * 1 2 3 26 26 H 1.08997 * 109.47199 * 60.00740 * 1 2 3 27 27 H 1.09003 * 109.46598 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46987 * 239.99887 * 2 1 3 29 29 H 1.09004 * 109.47078 * 119.99930 * 2 1 3 30 30 H 1.09000 * 109.47091 * 60.00022 * 4 3 2 31 31 H 1.08991 * 109.47057 * 300.00224 * 4 3 2 32 32 H 1.08996 * 109.47474 * 305.00426 * 5 4 3 33 33 H 1.08994 * 109.46816 * 184.99725 * 5 4 3 34 34 H 1.08996 * 109.46986 * 299.99804 * 7 6 5 35 35 H 1.08999 * 109.47212 * 60.00033 * 7 6 5 36 36 H 1.09006 * 109.32353 * 222.72255 * 11 10 8 37 37 H 1.08991 * 109.32525 * 342.37123 * 11 10 8 38 38 H 1.08997 * 109.00627 * 178.90106 * 12 11 10 39 39 H 1.08998 * 109.00624 * 297.76109 * 12 11 10 40 40 H 1.09000 * 109.76221 * 41.28892 * 13 12 11 41 41 H 1.09002 * 109.76472 * 162.00513 * 13 12 11 42 42 H 0.97000 * 120.00149 * 179.97438 * 18 17 15 43 43 H 1.09008 * 109.47790 * 80.57961 * 23 14 13 44 44 H 1.09000 * 109.48115 * 200.61580 * 23 14 13 45 45 H 1.08997 * 108.87916 * 31.47344 * 24 10 8 46 46 H 1.08997 * 108.87674 * 149.91363 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 8 3.3974 3.5461 1.2205 7 6 3.7190 4.9348 1.3224 8 6 3.2246 5.4694 2.6418 9 8 2.6526 4.7338 3.4182 10 7 3.4170 6.7651 2.9586 11 6 2.9300 7.2904 4.2561 12 6 4.0468 7.4268 5.2044 13 6 5.1459 8.3570 4.6641 14 7 5.9236 7.6169 3.7124 15 6 6.9714 6.8576 4.1603 16 1 6.9762 6.4891 5.1755 17 6 8.0274 6.5614 3.3095 18 7 8.1744 7.2301 2.1854 19 14 9.2400 5.2137 3.7598 20 1 8.8557 4.6180 5.0647 21 1 9.2227 4.1618 2.7116 22 1 10.6051 5.7894 3.8608 23 6 5.6284 7.6482 2.2537 24 6 4.0987 7.6345 2.0408 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8340 0.9765 -0.8892 31 1 3.8332 0.9768 0.8907 32 1 3.3498 3.4410 -0.8423 33 1 4.9081 3.0255 -0.0892 34 1 4.7997 5.0628 1.2609 35 1 3.2417 5.4790 0.5076 36 1 2.4683 8.2654 4.1001 37 1 2.1914 6.6034 4.6690 38 1 3.6682 7.8322 6.1427 39 1 4.4763 6.4425 5.3909 40 1 4.6918 9.2201 4.1773 41 1 5.7834 8.6891 5.4835 42 1 8.9126 7.0234 1.5910 43 1 6.0495 8.5538 1.8170 44 1 6.0697 6.7741 1.7747 45 1 3.8916 7.3048 1.0228 46 1 3.7174 8.6479 2.1657 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198290581.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:13 Heat of formation + Delta-G solvation = -94.445996 kcal Electronic energy + Delta-G solvation = -25947.062585 eV Core-core repulsion = 22259.306219 eV Total energy + Delta-G solvation = -3687.756366 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.75135 -38.37615 -37.31732 -36.51622 -34.19983 -32.85506 -31.90746 -30.90067 -29.54114 -27.84965 -26.98440 -25.15364 -23.67404 -22.89178 -22.54352 -21.82551 -19.76004 -18.54537 -17.28773 -16.97369 -16.84385 -16.18739 -16.01998 -15.72529 -15.24738 -15.00122 -14.61452 -14.22083 -13.85814 -13.65299 -13.42272 -13.28256 -12.98512 -12.72176 -12.49019 -12.40422 -12.04661 -11.97098 -11.70680 -11.52265 -11.35881 -11.30276 -11.00619 -10.94713 -10.77862 -10.52589 -10.25204 -10.16862 -9.88877 -9.69844 -9.67191 -9.47394 -9.16037 -8.49690 -8.02310 -6.72018 -5.81883 -3.22994 3.07098 3.26303 3.34789 3.43308 3.47441 3.59768 4.12367 4.48979 4.89054 4.92254 5.02757 5.13205 5.18370 5.22500 5.23514 5.32633 5.38515 5.41614 5.45423 5.53080 5.61746 5.64918 5.70362 5.72958 5.79244 5.82280 5.95251 5.98770 6.08431 6.14441 6.30131 6.46320 6.55110 6.83060 6.91415 7.06478 7.11434 7.25980 7.37451 7.45474 7.79266 7.99842 8.41652 8.74019 9.18661 9.86327 10.31181 11.26159 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.013916 B = 0.004355 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.611594 B = 6427.825232 C = 7637.954634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.066 3.934 5 C 0.062 3.938 6 O -0.356 6.356 7 C 0.045 3.955 8 C 0.524 3.476 9 O -0.537 6.537 10 N -0.585 5.585 11 C 0.132 3.868 12 C -0.171 4.171 13 C 0.163 3.837 14 N -0.591 5.591 15 C -0.248 4.248 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.910 5.910 19 Si 0.898 3.102 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.163 3.837 24 C 0.077 3.923 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.046 0.954 42 H 0.252 0.748 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 -5.711 -6.681 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.010 4.010 5 C -0.015 4.015 6 O -0.275 6.275 7 C -0.034 4.034 8 C 0.311 3.689 9 O -0.413 6.413 10 N -0.318 5.318 11 C 0.011 3.989 12 C -0.212 4.212 13 C 0.034 3.966 14 N -0.313 5.313 15 C -0.377 4.377 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.556 5.556 19 Si 0.728 3.272 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.037 3.963 24 C -0.048 4.048 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.391 -6.043 -6.251 14.330 hybrid contribution 1.269 -0.745 -0.120 1.477 sum -10.122 -6.788 -6.371 13.752 Atomic orbital electron populations 1.21730 0.93853 1.01954 1.03281 1.22440 0.95669 0.84128 0.99794 1.87986 1.20660 1.25930 1.95354 1.22498 0.82030 0.95692 1.00806 1.22553 0.98683 0.92523 0.87762 1.88041 1.80596 1.21354 1.37462 1.22299 1.01353 0.83534 0.96228 1.20003 0.79203 0.81830 0.87860 1.90649 1.42474 1.56571 1.51642 1.47299 1.56529 1.08885 1.19099 1.20528 0.96747 0.98163 0.83466 1.21888 0.98303 1.03411 0.97601 1.20290 0.91752 0.91769 0.92779 1.43658 1.33106 1.52999 1.01533 1.19245 0.96306 1.24211 0.97985 0.91713 1.24945 0.97103 0.99543 0.97961 1.70021 1.31886 1.40638 1.13037 0.86273 0.80982 0.81927 0.77985 1.20306 1.21641 1.21741 1.21868 0.87440 1.01959 0.85045 1.22154 0.97147 0.93765 0.91753 0.91605 0.92001 0.91326 0.93751 0.93399 0.91909 0.92231 0.92471 0.91398 0.89483 0.90922 0.92035 0.90466 0.92598 0.91294 0.94796 0.93592 0.93790 0.93859 0.90640 0.91811 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.06 0.60 6.66 37.16 0.25 0.85 16 3 O -0.38 -5.40 10.31 -40.08 -0.41 -5.81 16 4 C 0.07 0.83 6.32 37.16 0.23 1.06 16 5 C 0.06 0.85 6.32 37.16 0.23 1.08 16 6 O -0.36 -6.55 9.84 -59.73 -0.59 -7.14 16 7 C 0.05 0.79 4.97 36.01 0.18 0.97 16 8 C 0.52 10.65 7.75 -10.99 -0.09 10.56 16 9 O -0.54 -12.75 15.93 -14.36 -0.23 -12.98 16 10 N -0.58 -10.79 2.47 -176.94 -0.44 -11.23 16 11 C 0.13 2.27 5.70 -5.91 -0.03 2.23 16 12 C -0.17 -3.13 5.64 -29.13 -0.16 -3.29 16 13 C 0.16 3.26 5.63 -5.23 -0.03 3.23 16 14 N -0.59 -14.01 2.54 -172.26 -0.44 -14.45 16 15 C -0.25 -6.64 9.27 -15.06 -0.14 -6.78 16 16 H 0.07 1.77 7.87 -52.49 -0.41 1.36 16 17 C 0.00 0.05 4.94 -17.43 -0.09 -0.03 16 18 N -0.91 -25.07 10.90 55.49 0.60 -24.47 16 19 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 C 0.16 3.52 5.17 -1.98 -0.01 3.51 16 24 C 0.08 1.32 5.01 -4.81 -0.02 1.29 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.55 7.31 -51.93 -0.38 1.17 16 35 H 0.07 1.04 7.37 -51.93 -0.38 0.66 16 36 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 37 H 0.08 1.37 7.12 -51.93 -0.37 1.00 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.51 7.91 -51.93 -0.41 1.10 16 40 H 0.03 0.62 7.58 -51.93 -0.39 0.22 16 41 H 0.05 0.94 8.02 -51.93 -0.42 0.53 16 42 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 43 H 0.04 1.00 8.00 -51.92 -0.42 0.58 16 44 H 0.08 1.82 5.72 -51.93 -0.30 1.52 16 45 H 0.06 0.93 6.38 -51.93 -0.33 0.60 16 46 H 0.06 0.97 7.73 -51.93 -0.40 0.57 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -33.15 365.36 -8.31 -41.46 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.99 Total: -1.22 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 0.71 Total: 13.66 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.27 Total: -50.14 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -1.23 Total: -25.93 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.15 -8.31 -41.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198290581.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.986 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds