Wall clock time and date at job start Tue Mar 31 2020 03:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47468 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47108 * 120.00613 * 8 6 4 11 11 H 1.48507 * 109.47091 * 240.00414 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47093 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.46891 * 65.00047 * 19 18 17 21 21 C 1.42896 * 113.99772 * 180.02562 * 20 19 18 22 22 C 1.54266 * 110.03061 * 267.90683 * 21 20 19 23 23 C 1.54969 * 104.15985 * 217.13822 * 22 21 20 24 24 C 1.54887 * 102.77854 * 37.88770 * 23 22 21 25 25 C 1.53871 * 110.03356 * 150.69148 * 21 20 19 26 26 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 27 27 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 28 28 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 29 29 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 30 30 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 31 31 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 33 33 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 34 34 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 35 35 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 36 36 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 37 37 H 1.00899 * 110.99633 * 303.95531 * 17 16 13 38 38 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 39 39 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 40 40 H 1.08999 * 109.46781 * 185.00046 * 19 18 17 41 41 H 1.08992 * 109.46740 * 305.00079 * 19 18 17 42 42 H 1.08994 * 110.01924 * 29.29502 * 21 20 19 43 43 H 1.08999 * 110.49111 * 335.78337 * 22 21 20 44 44 H 1.09003 * 110.48737 * 98.42817 * 22 21 20 45 45 H 1.09006 * 110.71781 * 279.57284 * 23 22 21 46 46 H 1.09005 * 110.92191 * 156.30089 * 23 22 21 47 47 H 1.08996 * 110.48700 * 203.40922 * 24 23 22 48 48 H 1.08997 * 110.59447 * 80.81817 * 24 23 22 49 49 H 1.08999 * 110.03368 * 238.56626 * 25 21 20 50 50 H 1.09007 * 110.03454 * 359.95032 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 0.8166 3.2438 3.9918 10 1 2.8259 4.5929 3.8441 11 1 0.7569 5.3880 2.8601 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4282 -3.4033 -2.6169 20 8 7.4499 -4.3304 -1.5298 21 6 8.7618 -4.7516 -1.1512 22 6 9.1431 -6.0391 -1.9108 23 6 9.9458 -6.8666 -0.8751 24 6 9.1902 -6.5860 0.4474 25 6 8.7921 -5.0989 0.3475 26 1 -0.3633 0.5899 -0.8415 27 1 -0.3633 -1.0237 -0.0902 28 1 -0.3633 0.4337 0.9316 29 1 3.0797 1.3443 -0.1083 30 1 1.5612 1.9273 -0.8310 31 1 2.9876 4.9176 0.7775 32 1 1.3932 -1.6630 -1.2815 33 1 1.9552 -0.1531 -2.0382 34 1 2.9842 -2.8273 0.2040 35 1 3.4165 -2.8115 -2.2453 36 1 3.9750 -1.2717 -2.9420 37 1 5.9612 -1.4912 -1.5593 38 1 5.4001 -3.9264 -3.1222 39 1 5.9579 -2.3862 -3.8184 40 1 7.8841 -3.8616 -3.4945 41 1 7.9870 -2.5086 -2.3427 42 1 9.4834 -3.9636 -1.3666 43 1 8.2481 -6.5794 -2.2192 44 1 9.7638 -5.8026 -2.7750 45 1 10.9754 -6.5137 -0.8142 46 1 9.9169 -7.9286 -1.1188 47 1 9.8454 -6.7488 1.3031 48 1 8.3027 -7.2143 0.5227 49 1 9.5289 -4.4799 0.8594 50 1 7.8062 -4.9452 0.7864 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567679071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:45 Heat of formation + Delta-G solvation = -104.276083 kcal Electronic energy + Delta-G solvation = -24699.802697 eV Core-core repulsion = 21147.453161 eV Total energy + Delta-G solvation = -3552.349536 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 300.220 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.17678 -38.09556 -36.62909 -35.59601 -34.55790 -32.44221 -30.60496 -28.97567 -28.57590 -27.40736 -27.14123 -25.09854 -23.31837 -22.06311 -21.40740 -20.99320 -20.45351 -19.97058 -17.32607 -16.48088 -16.29882 -15.98660 -15.69660 -15.33876 -15.07877 -14.71542 -14.61790 -14.09145 -14.01513 -13.74255 -13.56021 -13.37866 -13.14872 -12.69348 -12.38701 -12.24351 -11.94443 -11.69685 -11.55450 -11.34551 -11.33301 -11.31223 -11.19888 -11.05505 -10.89676 -10.86659 -10.67106 -10.61106 -10.58288 -10.32780 -9.71993 -9.58988 -9.41062 -9.05660 -8.39034 -8.28991 -7.14584 -5.98701 -3.98594 3.34606 3.41757 3.47629 3.56584 4.05387 4.33620 4.36723 4.47627 4.67631 4.87778 4.89654 4.96443 5.05958 5.09068 5.22338 5.26100 5.28692 5.32760 5.37024 5.37526 5.40239 5.49608 5.55961 5.60376 5.69559 5.69732 5.72604 5.79308 5.80654 5.82764 5.93301 6.04866 6.07671 6.09609 6.13768 6.38987 6.57158 6.75450 6.99941 7.22924 7.31873 7.34991 7.43658 7.85590 8.13107 8.23411 8.35959 8.60897 9.09232 9.65220 11.12573 Molecular weight = 300.22amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.002432 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.057414 B =11510.400240 C =12117.322317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.501 4.501 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.026 3.974 13 C 0.120 3.880 14 H 0.098 0.902 15 O -0.530 6.530 16 C 0.028 3.972 17 N -0.669 5.669 18 C 0.060 3.940 19 C 0.066 3.934 20 O -0.359 6.359 21 C 0.083 3.917 22 C -0.148 4.148 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.124 4.124 26 H 0.010 0.990 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.030 0.970 30 H -0.012 1.012 31 H 0.260 0.740 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.361 0.639 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.342 0.658 38 H 0.078 0.922 39 H 0.040 0.960 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.810 -19.727 -8.771 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.116 0.884 15 O -0.332 6.332 16 C -0.102 4.102 17 N -0.301 5.301 18 C -0.069 4.069 19 C -0.011 4.011 20 O -0.278 6.278 21 C 0.025 3.975 22 C -0.185 4.185 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.162 4.162 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.006 0.994 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.205 0.795 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.160 0.840 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.085 -19.924 -7.708 24.544 hybrid contribution -0.419 1.487 -1.179 1.943 sum 11.666 -18.437 -8.887 23.559 Atomic orbital electron populations 1.22192 0.88883 0.98582 1.01079 1.62021 1.06480 1.17742 1.39261 1.19780 0.95422 0.81516 0.96526 1.21207 1.34365 0.96753 1.01663 0.91803 1.24996 0.95385 0.97406 0.97005 1.69967 1.38738 1.11362 1.34082 0.86439 0.78142 0.79209 0.83628 1.19630 1.21010 1.21223 1.22697 0.96224 0.98012 0.93477 1.21834 0.94853 0.92994 0.84409 0.88380 1.86682 1.74244 1.34134 1.38133 1.22719 0.90257 0.99400 0.97837 1.60274 1.02409 1.29871 1.37505 1.21977 0.94232 0.98829 0.91903 1.22519 0.96793 0.92228 0.89610 1.88110 1.26422 1.61968 1.51322 1.22765 0.84977 0.95051 0.94732 1.22928 1.00478 0.97046 0.98093 1.22444 0.98804 0.99759 0.95132 1.22330 1.00087 0.96267 0.97366 1.22217 1.03154 0.96195 0.94625 0.97117 0.93907 0.90961 0.95197 0.99444 0.93089 0.92163 0.95263 0.79453 0.91064 0.94905 0.83955 0.90376 0.94229 0.93378 0.93484 0.92345 0.90507 0.91909 0.91586 0.91519 0.91609 0.91353 0.91210 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 9.31 60.07 0.56 1.38 16 2 N -0.53 -11.77 4.59 -244.37 -1.12 -12.90 16 3 C 0.19 5.13 4.55 -4.98 -0.02 5.11 16 4 C -0.50 -14.50 8.58 -34.44 -0.30 -14.79 16 5 H 0.06 1.85 7.10 -52.49 -0.37 1.47 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 8 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.03 0.46 4.65 -3.82 -0.02 0.44 16 13 C 0.12 2.02 3.25 -26.73 -0.09 1.93 16 14 H 0.10 1.95 6.73 -51.93 -0.35 1.60 16 15 O -0.53 -9.60 13.11 -35.23 -0.46 -10.06 16 16 C 0.03 0.37 5.35 -3.82 -0.02 0.35 16 17 N -0.67 -8.75 6.32 -113.78 -0.72 -9.47 16 18 C 0.06 0.63 6.07 -3.83 -0.02 0.61 16 19 C 0.07 0.65 6.06 37.16 0.23 0.88 16 20 O -0.36 -4.30 9.84 -35.23 -0.35 -4.64 16 21 C 0.08 0.80 3.38 -25.62 -0.09 0.71 16 22 C -0.15 -1.19 6.56 -25.03 -0.16 -1.36 16 23 C -0.12 -0.87 6.91 -24.70 -0.17 -1.04 16 24 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 25 C -0.12 -1.18 6.61 -25.61 -0.17 -1.35 16 26 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 27 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 28 H 0.07 1.53 7.01 -51.93 -0.36 1.17 16 29 H 0.03 0.85 6.60 -51.93 -0.34 0.50 16 30 H -0.01 -0.35 8.07 -51.92 -0.42 -0.76 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 33 H 0.03 0.52 8.00 -51.93 -0.42 0.11 16 34 H 0.36 5.23 9.05 45.56 0.41 5.64 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.34 4.57 8.73 -39.29 -0.34 4.23 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.45 8.10 -51.93 -0.42 0.03 16 42 H 0.06 0.52 7.81 -51.93 -0.41 0.12 16 43 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 0.95 7.96 -51.92 -0.41 0.54 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -32.49 396.35 -10.37 -42.86 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.87 Total: 4.37 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.54 Total: -6.83 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -1.10 Total: -48.83 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.81 Total: -14.70 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.49 -10.37 -42.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567679071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.414 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds