Wall clock time and date at job start Tue Mar 31 2020 03:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47468 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47108 * 120.00613 * 8 6 4 11 11 H 1.48507 * 109.47091 * 240.00414 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47093 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.46891 * 65.00047 * 19 18 17 21 21 C 1.42896 * 113.99772 * 180.02562 * 20 19 18 22 22 C 1.54266 * 110.03061 * 267.90683 * 21 20 19 23 23 C 1.54969 * 104.15985 * 217.13822 * 22 21 20 24 24 C 1.54887 * 102.77854 * 37.88770 * 23 22 21 25 25 C 1.53871 * 110.03356 * 150.69148 * 21 20 19 26 26 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 27 27 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 28 28 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 29 29 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 30 30 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 31 31 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 33 33 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 34 34 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 35 35 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 36 36 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 37 37 H 1.00899 * 110.99633 * 303.95531 * 17 16 13 38 38 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 39 39 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 40 40 H 1.08999 * 109.46781 * 185.00046 * 19 18 17 41 41 H 1.08992 * 109.46740 * 305.00079 * 19 18 17 42 42 H 1.08994 * 110.01924 * 29.29502 * 21 20 19 43 43 H 1.08999 * 110.49111 * 335.78337 * 22 21 20 44 44 H 1.09003 * 110.48737 * 98.42817 * 22 21 20 45 45 H 1.09006 * 110.71781 * 279.57284 * 23 22 21 46 46 H 1.09005 * 110.92191 * 156.30089 * 23 22 21 47 47 H 1.08996 * 110.48700 * 203.40922 * 24 23 22 48 48 H 1.08997 * 110.59447 * 80.81817 * 24 23 22 49 49 H 1.08999 * 110.03368 * 238.56626 * 25 21 20 50 50 H 1.09007 * 110.03454 * 359.95032 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 0.8166 3.2438 3.9918 10 1 2.8259 4.5929 3.8441 11 1 0.7569 5.3880 2.8601 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4282 -3.4033 -2.6169 20 8 7.4499 -4.3304 -1.5298 21 6 8.7618 -4.7516 -1.1512 22 6 9.1431 -6.0391 -1.9108 23 6 9.9458 -6.8666 -0.8751 24 6 9.1902 -6.5860 0.4474 25 6 8.7921 -5.0989 0.3475 26 1 -0.3633 0.5899 -0.8415 27 1 -0.3633 -1.0237 -0.0902 28 1 -0.3633 0.4337 0.9316 29 1 3.0797 1.3443 -0.1083 30 1 1.5612 1.9273 -0.8310 31 1 2.9876 4.9176 0.7775 32 1 1.3932 -1.6630 -1.2815 33 1 1.9552 -0.1531 -2.0382 34 1 2.9842 -2.8273 0.2040 35 1 3.4165 -2.8115 -2.2453 36 1 3.9750 -1.2717 -2.9420 37 1 5.9612 -1.4912 -1.5593 38 1 5.4001 -3.9264 -3.1222 39 1 5.9579 -2.3862 -3.8184 40 1 7.8841 -3.8616 -3.4945 41 1 7.9870 -2.5086 -2.3427 42 1 9.4834 -3.9636 -1.3666 43 1 8.2481 -6.5794 -2.2192 44 1 9.7638 -5.8026 -2.7750 45 1 10.9754 -6.5137 -0.8142 46 1 9.9169 -7.9286 -1.1188 47 1 9.8454 -6.7488 1.3031 48 1 8.3027 -7.2143 0.5227 49 1 9.5289 -4.4799 0.8594 50 1 7.8062 -4.9452 0.7864 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567679071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:44 Heat of formation + Delta-G solvation = -129.656811 kcal Electronic energy + Delta-G solvation = -24700.903288 eV Core-core repulsion = 21147.453161 eV Total energy + Delta-G solvation = -3553.450127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 300.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.94514 -39.46652 -37.68954 -36.92271 -35.66494 -34.60510 -31.76348 -29.89447 -29.57219 -29.17353 -28.10717 -26.55232 -25.07343 -22.95445 -22.82324 -21.65509 -21.60043 -21.17446 -18.61117 -18.14139 -17.53862 -16.88757 -16.76819 -16.61236 -16.36526 -16.22354 -15.80121 -15.53511 -15.17927 -14.82476 -14.72746 -14.60006 -14.22712 -14.03885 -13.89214 -13.37366 -13.15477 -13.07275 -12.88540 -12.72735 -12.56563 -12.52103 -12.31902 -12.24920 -12.13841 -12.00300 -11.95643 -11.91794 -11.52444 -11.47162 -11.41463 -11.30413 -10.66338 -10.61409 -10.33713 -9.27856 -8.93821 -8.21319 -6.30353 1.39004 1.40608 1.54173 2.40001 2.81372 2.96134 3.11333 3.46843 3.68827 3.72089 3.76318 3.96111 4.03045 4.16007 4.17769 4.28329 4.36687 4.38024 4.44348 4.54234 4.56578 4.58638 4.60235 4.62042 4.63852 4.75868 4.78315 4.80498 4.83340 4.92862 5.00319 5.06326 5.07471 5.11622 5.18858 5.24178 5.25221 5.30261 5.32373 5.46445 5.65148 6.03560 6.08249 6.33414 6.36337 6.52108 6.65801 6.85747 7.14887 7.38984 8.90108 Molecular weight = 300.22amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.002432 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.057414 B =11510.400240 C =12117.322317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.544 5.544 3 C 0.210 3.790 4 C -0.522 4.522 5 H 0.060 0.940 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.276 1.276 12 C 0.027 3.973 13 C 0.127 3.873 14 H 0.058 0.942 15 O -0.552 6.552 16 C 0.043 3.957 17 N -0.684 5.684 18 C 0.062 3.938 19 C 0.065 3.935 20 O -0.386 6.386 21 C 0.076 3.924 22 C -0.143 4.143 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.128 4.128 26 H 0.008 0.992 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.003 0.997 30 H -0.040 1.040 31 H 0.264 0.736 32 H 0.096 0.904 33 H 0.028 0.972 34 H 0.377 0.623 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.336 0.664 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.061 0.939 49 H 0.075 0.925 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.918 -21.180 -9.065 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.268 5.268 3 C 0.084 3.916 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.201 1.201 12 C -0.102 4.102 13 C 0.066 3.934 14 H 0.076 0.924 15 O -0.357 6.357 16 C -0.087 4.087 17 N -0.316 5.316 18 C -0.067 4.067 19 C -0.012 4.012 20 O -0.305 6.305 21 C 0.019 3.981 22 C -0.181 4.181 23 C -0.157 4.157 24 C -0.159 4.159 25 C -0.166 4.166 26 H 0.027 0.973 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.021 0.979 30 H -0.023 1.023 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.046 0.954 34 H 0.224 0.776 35 H 0.108 0.892 36 H 0.058 0.942 37 H 0.154 0.846 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.182 -21.412 -8.019 25.907 hybrid contribution -0.447 1.891 -1.105 2.235 sum 11.735 -19.520 -9.124 24.536 Atomic orbital electron populations 1.22213 0.87416 1.00895 1.00026 1.61921 1.07945 1.15144 1.41806 1.19390 0.93680 0.83843 0.94724 1.21512 1.34595 0.97439 1.02439 0.92206 1.25927 0.95078 0.98105 1.00758 1.70086 1.39509 1.11851 1.36128 0.85335 0.78094 0.78191 0.79010 1.18863 1.20422 1.20141 1.22809 0.97136 0.98546 0.91753 1.21650 0.93966 0.92127 0.85651 0.92392 1.86634 1.74865 1.35150 1.39057 1.22515 0.90605 0.99696 0.95907 1.60287 1.02338 1.29766 1.39166 1.22030 0.94470 0.98679 0.91513 1.22600 0.96534 0.92140 0.89954 1.88071 1.27826 1.62475 1.52163 1.22929 0.84328 0.96012 0.94879 1.22888 1.00424 0.96174 0.98639 1.22451 0.98976 1.00284 0.93979 1.22330 1.00223 0.94844 0.98538 1.22251 1.01895 0.97661 0.94758 0.97346 0.89881 0.92785 0.97886 1.02271 0.92722 0.88545 0.95402 0.77586 0.89167 0.94163 0.84608 0.90293 0.92588 0.91270 0.93579 0.91764 0.91473 0.90602 0.90520 0.90458 0.90492 0.91995 0.90666 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.31 127.69 1.19 2.85 16 2 N -0.54 -24.21 4.59 -927.06 -4.25 -28.47 16 3 C 0.21 11.60 4.55 85.56 0.39 11.99 16 4 C -0.52 -30.84 8.58 25.60 0.22 -30.62 16 5 H 0.06 3.51 7.10 -2.91 -0.02 3.49 16 6 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 7 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 8 Si 0.97 45.81 29.54 68.60 2.03 47.83 16 9 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.03 0.92 4.65 86.30 0.40 1.33 16 13 C 0.13 4.29 3.25 30.59 0.10 4.39 16 14 H 0.06 2.44 6.73 -2.39 -0.02 2.42 16 15 O -0.55 -19.90 13.11 -148.98 -1.95 -21.85 16 16 C 0.04 1.08 5.35 86.30 0.46 1.55 16 17 N -0.68 -17.56 6.32 -513.89 -3.25 -20.80 16 18 C 0.06 1.22 6.07 86.31 0.52 1.74 16 19 C 0.06 1.21 6.06 71.98 0.44 1.65 16 20 O -0.39 -9.07 9.84 -148.98 -1.47 -10.54 16 21 C 0.08 1.42 3.38 31.32 0.11 1.53 16 22 C -0.14 -2.11 6.56 31.70 0.21 -1.90 16 23 C -0.12 -1.47 6.91 31.91 0.22 -1.25 16 24 C -0.12 -1.81 6.83 31.67 0.22 -1.59 16 25 C -0.13 -2.42 6.61 31.32 0.21 -2.22 16 26 H 0.01 0.32 8.08 -2.39 -0.02 0.30 16 27 H 0.08 2.54 7.85 -2.39 -0.02 2.53 16 28 H 0.05 2.27 7.01 -2.39 -0.02 2.25 16 29 H 0.00 0.19 6.60 -2.39 -0.02 0.17 16 30 H -0.04 -2.40 8.07 -2.38 -0.02 -2.41 16 31 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.10 2.66 7.75 -2.39 -0.02 2.64 16 33 H 0.03 0.99 8.00 -2.39 -0.02 0.97 16 34 H 0.38 10.42 9.05 -74.06 -0.67 9.75 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.34 9.16 8.73 -89.70 -0.78 8.38 16 38 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 42 H 0.06 1.09 7.81 -2.39 -0.02 1.07 16 43 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.08 0.80 8.14 -2.38 -0.02 0.79 16 47 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.06 1.39 7.96 -2.38 -0.02 1.37 16 Total: -1.00 -71.42 396.35 -4.02 -75.45 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -0.56 Total: 25.88 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 5.14 Total: -10.16 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -7.21 Total: -106.61 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -3.42 Total: -32.39 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.42 -4.02 -75.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567679071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.209 kcal (2) G-P(sol) polarization free energy of solvation -71.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds