Wall clock time and date at job start Tue Mar 31 2020 03:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46906 * 111.00136 * 2 1 4 4 C 1.50693 * 109.47155 * 66.04479 * 3 2 1 5 5 H 1.08002 * 120.00119 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00394 * 180.02562 * 4 3 2 7 7 N 1.31508 * 120.00401 * 180.02562 * 6 4 3 8 8 Si 1.86807 * 119.99435 * 359.97438 * 6 4 3 9 9 H 1.48494 * 109.46954 * 90.00203 * 8 6 4 10 10 H 1.48501 * 109.46843 * 210.00277 * 8 6 4 11 11 H 1.48504 * 109.47114 * 330.00314 * 8 6 4 12 12 C 1.46901 * 111.00243 * 236.04528 * 2 1 3 13 13 C 1.53000 * 109.46769 * 293.95721 * 12 2 1 14 14 H 1.08992 * 109.47399 * 59.99697 * 13 12 2 15 15 O 1.42900 * 109.47041 * 299.99294 * 13 12 2 16 16 C 1.53001 * 109.46886 * 180.02562 * 13 12 2 17 17 N 1.46896 * 109.47098 * 185.00074 * 16 13 12 18 18 C 1.46903 * 111.00046 * 179.97438 * 17 16 13 19 19 C 1.53006 * 109.47219 * 179.97438 * 18 17 16 20 20 C 1.52994 * 109.47074 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.48012 * 304.97504 * 20 19 18 22 22 C 1.53095 * 109.48049 * 184.94329 * 20 19 18 23 23 C 1.53176 * 109.16606 * 182.40971 * 22 20 19 24 24 C 1.53175 * 109.03751 * 56.97845 * 23 22 20 25 25 C 1.53094 * 109.16144 * 303.02325 * 24 23 22 26 26 O 1.42898 * 109.48047 * 65.00173 * 20 19 18 27 27 H 1.08999 * 109.47439 * 183.95618 * 1 2 3 28 28 H 1.08997 * 109.47257 * 303.95746 * 1 2 3 29 29 H 1.09006 * 109.46808 * 63.95302 * 1 2 3 30 30 H 1.09000 * 109.47257 * 186.04513 * 3 2 1 31 31 H 1.09006 * 109.46871 * 306.04551 * 3 2 1 32 32 H 0.97005 * 119.99916 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47401 * 173.95428 * 12 2 1 34 34 H 1.09001 * 109.46874 * 53.95440 * 12 2 1 35 35 H 0.96698 * 114.00516 * 300.00983 * 15 13 12 36 36 H 1.09008 * 109.46864 * 304.99696 * 16 13 12 37 37 H 1.09000 * 109.47679 * 64.99728 * 16 13 12 38 38 H 1.00905 * 111.00162 * 56.04172 * 17 16 13 39 39 H 1.08991 * 109.47170 * 299.99552 * 18 17 16 40 40 H 1.09001 * 109.46877 * 59.99944 * 18 17 16 41 41 H 1.09001 * 109.46992 * 300.00129 * 19 18 17 42 42 H 1.09001 * 109.46816 * 59.99549 * 19 18 17 43 43 H 1.09003 * 109.52241 * 302.31441 * 22 20 19 44 44 H 1.08996 * 109.52310 * 62.49695 * 22 20 19 45 45 H 1.09005 * 109.53904 * 297.11108 * 23 22 20 46 46 H 1.09004 * 109.54412 * 176.84696 * 23 22 20 47 47 H 1.08997 * 109.52616 * 183.11820 * 24 23 22 48 48 H 1.09000 * 109.57661 * 62.95659 * 24 23 22 49 49 H 1.08999 * 109.48161 * 297.62194 * 25 24 23 50 50 H 1.09002 * 109.47849 * 177.59264 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0268 3.3495 1.5285 7 7 1.7143 3.9390 2.6617 8 14 3.0000 4.2762 0.2309 9 1 2.0634 4.9797 -0.6817 10 1 3.8864 5.2678 0.8913 11 1 3.8239 3.3174 -0.5484 12 6 1.9954 -0.7660 -1.1376 13 6 1.6314 -2.2426 -0.9703 14 1 0.5472 -2.3475 -0.9322 15 8 2.2008 -2.7391 0.2427 16 6 2.1803 -3.0405 -2.1547 17 7 1.7298 -4.4352 -2.0564 18 6 2.2384 -5.2332 -3.1801 19 6 1.7499 -6.6767 -3.0429 20 6 2.2801 -7.5078 -4.2128 21 1 1.9900 -7.0388 -5.1530 22 6 1.6924 -8.9198 -4.1438 23 6 2.2742 -9.7629 -5.2826 24 6 3.8020 -9.7633 -5.1738 25 6 4.3083 -8.3188 -5.2031 26 8 3.7052 -7.5823 -4.1372 27 1 -0.3634 -1.0252 0.0709 28 1 -0.3633 0.5740 0.8524 29 1 -0.3633 0.4513 -0.9234 30 1 3.0797 1.3444 -0.1082 31 1 1.5611 1.9274 -0.8310 32 1 1.9889 4.8552 2.8237 33 1 3.0797 -0.6611 -1.1756 34 1 1.5611 -0.3872 -2.0628 35 1 3.1652 -2.6771 0.2788 36 1 1.8160 -2.6058 -3.0857 37 1 3.2697 -3.0087 -2.1407 38 1 0.7235 -4.4873 -2.0026 39 1 1.8742 -4.8137 -4.1178 40 1 3.3282 -5.2166 -3.1735 41 1 2.1144 -7.0960 -2.1051 42 1 0.6600 -6.6935 -3.0491 43 1 1.9482 -9.3744 -3.1867 44 1 0.6084 -8.8685 -4.2455 45 1 1.9769 -9.3364 -6.2407 46 1 1.9029 -10.7849 -5.2061 47 1 4.2268 -10.3152 -6.0123 48 1 4.1015 -10.2353 -4.2380 49 1 4.0447 -7.8605 -6.1563 50 1 5.3916 -8.3108 -5.0831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573200367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:04 Heat of formation + Delta-G solvation = -105.838997 kcal Electronic energy + Delta-G solvation = -24443.269180 eV Core-core repulsion = 20890.851871 eV Total energy + Delta-G solvation = -3552.417309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 300.220 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.86793 -38.32556 -36.39165 -35.24010 -34.03314 -33.07948 -32.42670 -30.30192 -28.73208 -27.52305 -26.00111 -24.89842 -23.75753 -22.75864 -21.73841 -20.96168 -20.64863 -20.06790 -16.96584 -16.90678 -16.47372 -16.41129 -15.69423 -15.28913 -15.15279 -14.96888 -14.77263 -14.47151 -14.17359 -14.14381 -13.83771 -13.48615 -13.20485 -13.09589 -12.70157 -12.61096 -12.29036 -12.02281 -11.87481 -11.63379 -11.56651 -11.45915 -11.30702 -11.15548 -11.08483 -10.95928 -10.68852 -10.67712 -10.62493 -10.21515 -9.88378 -9.80043 -9.47266 -9.18151 -8.55702 -8.49070 -7.31265 -6.02515 -3.99478 3.28606 3.36315 3.38004 3.39539 3.82481 4.34594 4.35554 4.41541 4.43444 4.50810 4.67131 4.74046 4.81521 4.89152 4.99463 5.01369 5.06918 5.13583 5.22143 5.27463 5.30533 5.34251 5.35028 5.43745 5.50665 5.51844 5.58011 5.60252 5.65413 5.67387 5.79439 5.88643 5.96206 5.98053 6.14137 6.23987 6.35179 6.72035 6.85901 6.86204 6.90580 7.01534 7.25370 7.61936 7.92747 8.03874 8.19188 8.69211 9.07463 9.59065 11.10683 Molecular weight = 300.22amu Principal moments of inertia in cm(-1) A = 0.038663 B = 0.001972 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.028908 B =14195.682741 C =14555.574264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.519 5.519 3 C 0.161 3.839 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.021 3.979 13 C 0.118 3.882 14 H 0.092 0.908 15 O -0.534 6.534 16 C 0.028 3.972 17 N -0.679 5.679 18 C 0.062 3.938 19 C -0.110 4.110 20 C 0.092 3.908 21 H 0.055 0.945 22 C -0.151 4.151 23 C -0.123 4.123 24 C -0.157 4.157 25 C 0.060 3.940 26 O -0.375 6.375 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.008 0.992 30 H 0.027 0.973 31 H -0.019 1.019 32 H 0.263 0.737 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.369 0.631 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.338 0.662 39 H 0.022 0.978 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.048 0.952 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.515 -26.763 -19.405 33.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.242 5.242 3 C 0.035 3.965 4 C -0.545 4.545 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.109 4.109 13 C 0.057 3.943 14 H 0.110 0.890 15 O -0.338 6.338 16 C -0.102 4.102 17 N -0.310 5.310 18 C -0.067 4.067 19 C -0.147 4.147 20 C 0.034 3.966 21 H 0.073 0.927 22 C -0.188 4.188 23 C -0.161 4.161 24 C -0.195 4.195 25 C -0.017 4.017 26 O -0.294 6.294 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.026 0.974 30 H 0.045 0.955 31 H -0.001 1.001 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.215 0.785 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.156 0.844 39 H 0.041 0.959 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.066 0.934 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.684 -27.014 -18.149 32.588 hybrid contribution 0.133 1.360 -2.691 3.018 sum 1.816 -25.654 -20.839 33.102 Atomic orbital electron populations 1.22287 0.88363 1.00044 1.00604 1.61847 1.07292 1.15908 1.39173 1.20211 0.95106 0.84181 0.96981 1.21049 1.35456 0.97118 1.00924 0.90018 1.24909 0.95820 0.97373 0.95328 1.69895 1.46959 1.13212 1.23868 0.86857 0.80621 0.80021 0.82167 1.20448 1.21132 1.19302 1.22795 1.00527 0.94420 0.93174 1.21831 0.98214 0.90420 0.83798 0.89021 1.86597 1.24934 1.84897 1.37330 1.22721 1.01202 0.88408 0.97916 1.60356 1.16168 1.10214 1.44258 1.21926 1.01196 0.92456 0.91165 1.21581 1.00142 0.94489 0.98531 1.22090 0.81324 0.94654 0.98520 0.92691 1.22211 1.00688 0.96125 0.99824 1.21590 0.95382 1.00454 0.98639 1.22198 0.96342 0.98014 1.02964 1.22552 0.98116 0.90653 0.90340 1.87983 1.19342 1.73740 1.48323 0.93129 0.90100 0.97400 0.95523 1.00108 0.92696 0.91135 0.95505 0.78475 0.94850 0.90622 0.84386 0.95941 0.90288 0.89907 0.90708 0.90778 0.90869 0.91940 0.91456 0.91016 0.90953 0.93414 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.14 60.06 0.55 1.25 16 2 N -0.52 -11.10 4.62 -244.37 -1.13 -12.22 16 3 C 0.16 4.00 3.79 -4.98 -0.02 3.98 16 4 C -0.51 -14.71 9.01 -34.44 -0.31 -15.02 16 5 H 0.08 2.59 7.37 -52.49 -0.39 2.20 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 8 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 12 C 0.02 0.35 4.62 -3.82 -0.02 0.33 16 13 C 0.12 1.68 3.02 -26.73 -0.08 1.60 16 14 H 0.09 1.33 6.55 -51.93 -0.34 0.99 16 15 O -0.53 -8.66 13.15 -35.23 -0.46 -9.12 16 16 C 0.03 0.32 5.32 -3.83 -0.02 0.30 16 17 N -0.68 -7.44 6.45 -113.78 -0.73 -8.17 16 18 C 0.06 0.59 5.58 -3.82 -0.02 0.57 16 19 C -0.11 -0.90 5.18 -26.73 -0.14 -1.04 16 20 C 0.09 0.71 2.64 -26.69 -0.07 0.64 16 21 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 22 C -0.15 -0.95 5.42 -26.59 -0.14 -1.10 16 23 C -0.12 -0.68 6.03 -26.55 -0.16 -0.84 16 24 C -0.16 -0.88 6.14 -26.59 -0.16 -1.04 16 25 C 0.06 0.40 6.84 37.21 0.25 0.66 16 26 O -0.37 -3.48 9.94 -35.23 -0.35 -3.83 16 27 H 0.05 0.88 6.47 -51.93 -0.34 0.54 16 28 H 0.08 1.79 6.76 -51.93 -0.35 1.44 16 29 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.03 0.67 6.99 -51.93 -0.36 0.30 16 31 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 34 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.37 5.05 9.04 45.56 0.41 5.46 16 36 H 0.03 0.37 8.14 -51.92 -0.42 -0.06 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.34 3.43 8.73 -39.29 -0.34 3.08 16 39 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.86 7.82 -51.93 -0.41 0.45 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 50 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -32.70 388.32 -10.01 -42.71 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.85 Total: 2.70 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.44 Total: -7.85 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: -1.09 Total: -47.55 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.81 Total: -12.95 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.70 -10.01 -42.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573200367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.133 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds