Wall clock time and date at job start Tue Mar 31 2020 03:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47274 * 2 1 4 4 O 1.42904 * 109.47458 * 120.00134 * 2 1 3 5 5 C 1.42889 * 114.00467 * 150.00261 * 4 2 1 6 6 C 1.52996 * 109.47523 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47510 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.47206 * 55.00097 * 7 6 5 9 9 O 1.42903 * 109.47426 * 295.00152 * 7 6 5 10 10 C 1.53000 * 109.47270 * 174.99897 * 7 6 5 11 11 N 1.46904 * 109.46972 * 185.00207 * 10 7 6 12 12 C 1.46904 * 110.99799 * 180.02562 * 11 10 7 13 13 C 1.53045 * 109.46006 * 275.06851 * 12 11 10 14 14 C 1.53184 * 109.31357 * 178.61447 * 13 12 11 15 15 N 1.46925 * 108.77745 * 54.63525 * 14 13 12 16 16 C 1.36935 * 120.63233 * 126.41266 * 15 14 13 17 17 H 1.07994 * 120.00304 * 331.82058 * 16 15 14 18 18 C 1.38817 * 119.99974 * 151.82947 * 16 15 14 19 19 N 1.31625 * 119.99755 * 343.06966 * 18 16 15 20 20 Si 1.86797 * 120.00136 * 163.07988 * 18 16 15 21 21 H 1.48506 * 109.47133 * 59.99561 * 20 18 16 22 22 H 1.48501 * 109.47094 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46923 * 299.99404 * 20 18 16 24 24 C 1.46926 * 118.73941 * 306.39129 * 15 14 13 25 25 C 1.53040 * 109.46159 * 154.99989 * 12 11 10 26 26 H 1.08995 * 109.47669 * 299.99342 * 1 2 3 27 27 H 1.09002 * 109.47314 * 60.00189 * 1 2 3 28 28 H 1.09007 * 109.47025 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47533 * 239.99858 * 2 1 3 30 30 H 1.08997 * 109.47185 * 300.00389 * 3 2 1 31 31 H 1.09004 * 109.46956 * 59.99505 * 3 2 1 32 32 H 1.09000 * 109.47576 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47452 * 59.99802 * 5 4 2 34 34 H 1.09004 * 109.47092 * 300.00509 * 5 4 2 35 35 H 1.09005 * 109.47330 * 59.99831 * 6 5 4 36 36 H 1.09004 * 109.47330 * 300.00336 * 6 5 4 37 37 H 0.96697 * 113.99723 * 299.99940 * 9 7 6 38 38 H 1.08998 * 109.47412 * 304.99904 * 10 7 6 39 39 H 1.08997 * 109.47071 * 65.00841 * 10 7 6 40 40 H 1.00901 * 111.00054 * 56.04969 * 11 10 7 41 41 H 1.08996 * 109.46066 * 35.02870 * 12 11 10 42 42 H 1.09004 * 109.49708 * 298.56682 * 13 12 11 43 43 H 1.09001 * 109.49358 * 58.65968 * 13 12 11 44 44 H 1.08999 * 109.58811 * 294.85024 * 14 13 12 45 45 H 1.08998 * 109.70561 * 174.49286 * 14 13 12 46 46 H 0.97003 * 119.99690 * 180.02562 * 19 18 16 47 47 H 1.09004 * 109.58621 * 293.82173 * 24 15 14 48 48 H 1.08996 * 109.70972 * 173.46487 * 24 15 14 49 49 H 1.09002 * 109.49700 * 301.33882 * 25 12 11 50 50 H 1.09005 * 109.49567 * 61.39931 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2659 -1.3244 0.9887 6 6 3.6755 -2.0091 2.2942 7 6 5.0238 -2.7064 2.1033 8 1 5.7576 -1.9859 1.7417 9 8 4.8835 -3.7622 1.1506 10 6 5.4928 -3.2846 3.4399 11 7 6.8401 -3.8487 3.2837 12 6 7.3239 -4.4149 4.5500 13 6 7.9554 -3.3067 5.3958 14 6 8.4274 -3.8940 6.7295 15 7 9.3206 -5.0284 6.4571 16 6 10.5722 -5.0794 7.0102 17 1 11.0932 -4.1650 7.2524 18 6 11.1715 -6.3065 7.2593 19 7 10.4421 -7.4019 7.2853 20 14 13.0129 -6.4033 7.5578 21 1 13.3656 -5.5841 8.7452 22 1 13.4018 -7.8161 7.7984 23 1 13.7351 -5.8865 6.3676 24 6 8.8450 -6.1073 5.5805 25 6 8.3682 -5.4952 4.2595 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 4.0200 -0.5873 0.7125 34 1 3.1809 -2.0706 0.1986 35 1 2.9214 -2.7463 2.5699 36 1 3.7604 -1.2632 3.0845 37 1 4.2449 -4.4414 1.4074 38 1 5.5147 -2.4941 4.1901 39 1 4.8054 -4.0684 3.7579 40 1 7.4827 -3.1570 2.9277 41 1 6.4880 -4.8549 5.0938 42 1 8.8069 -2.8830 4.8631 43 1 7.2176 -2.5264 5.5825 44 1 7.5663 -4.2365 7.3032 45 1 8.9649 -3.1337 7.2962 46 1 10.8608 -8.2593 7.4598 47 1 8.0178 -6.6303 6.0604 48 1 9.6570 -6.8081 5.3864 49 1 7.9243 -6.2726 3.6376 50 1 9.2155 -5.0510 3.7370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591736523.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:31 Heat of formation + Delta-G solvation = -96.327697 kcal Electronic energy + Delta-G solvation = -24760.965456 eV Core-core repulsion = 21208.960588 eV Total energy + Delta-G solvation = -3552.004868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 300.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.08096 -38.35470 -37.37856 -34.76163 -33.58368 -32.27049 -31.36093 -30.09328 -29.32994 -27.65581 -26.83882 -24.50561 -22.81764 -22.05494 -21.87253 -21.48005 -21.14919 -19.20775 -17.20479 -16.97081 -16.46534 -16.31296 -15.44818 -15.18851 -15.04483 -14.60869 -14.56535 -13.90085 -13.85361 -13.58725 -13.41026 -13.04424 -13.00657 -12.85941 -12.72088 -12.60515 -12.17685 -12.10415 -11.96252 -11.75237 -11.41402 -11.36268 -11.10286 -11.04494 -10.89969 -10.75099 -10.69138 -10.31551 -10.20601 -10.12282 -9.90784 -9.83877 -9.68826 -9.40133 -8.45602 -8.01440 -6.64293 -5.76126 -3.18619 3.23644 3.40065 3.45785 3.47202 4.16589 4.44787 4.49278 4.51905 4.60086 4.68043 4.78549 4.81530 4.95200 5.10787 5.14969 5.19301 5.25845 5.33845 5.38225 5.43013 5.44483 5.47625 5.49911 5.54481 5.66156 5.72246 5.73323 5.80743 5.81701 5.89853 6.00223 6.11269 6.32900 6.50713 6.63173 6.65326 6.72354 6.88112 6.94975 6.96282 7.35005 7.41164 7.56185 7.68376 7.73009 7.82125 8.48408 9.24424 9.87808 10.44889 11.32406 Molecular weight = 300.22amu Principal moments of inertia in cm(-1) A = 0.044543 B = 0.002078 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.458315 B =13473.977315 C =13673.402056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 C -0.176 4.176 4 O -0.386 6.386 5 C 0.067 3.933 6 C -0.150 4.150 7 C 0.114 3.886 8 H 0.096 0.904 9 O -0.550 6.550 10 C 0.029 3.971 11 N -0.679 5.679 12 C 0.096 3.904 13 C -0.160 4.160 14 C 0.150 3.850 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.171 3.829 25 C -0.124 4.124 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.373 0.627 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.336 0.664 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.044 0.956 44 H 0.015 0.985 45 H 0.052 0.948 46 H 0.254 0.746 47 H 0.016 0.984 48 H 0.088 0.912 49 H 0.054 0.946 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.800 13.400 -14.269 26.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.023 3.977 3 C -0.233 4.233 4 O -0.306 6.306 5 C -0.010 4.010 6 C -0.188 4.188 7 C 0.054 3.946 8 H 0.114 0.886 9 O -0.355 6.355 10 C -0.101 4.101 11 N -0.308 5.308 12 C -0.013 4.013 13 C -0.201 4.201 14 C 0.022 3.978 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.081 0.919 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.044 3.956 25 C -0.164 4.164 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.220 0.780 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.154 0.846 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.034 0.966 48 H 0.106 0.894 49 H 0.073 0.927 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.623 12.958 -14.609 26.304 hybrid contribution 0.849 0.543 0.863 1.327 sum -16.773 13.501 -13.746 25.545 Atomic orbital electron populations 1.21863 0.93673 1.02708 1.02458 1.22065 0.94952 0.92437 0.88279 1.22305 1.01611 0.96855 1.02545 1.87903 1.36952 1.70097 1.35664 1.22448 0.85172 0.95333 0.98010 1.22229 0.98048 1.00883 0.97654 1.21821 0.94735 0.88867 0.89141 0.88635 1.86587 1.66197 1.36373 1.46303 1.22638 0.92893 0.98542 0.96057 1.60662 1.02370 1.38561 1.29215 1.21543 0.97102 0.95109 0.87580 1.22698 0.99521 0.97702 1.00180 1.20802 0.93338 0.91029 0.92597 1.44057 1.13439 1.20804 1.53188 1.19131 0.91149 0.92000 1.36005 0.91876 1.25049 0.98353 0.96311 0.99943 1.70027 1.33874 0.98151 1.52655 0.86366 0.85597 0.76616 0.78158 1.20942 1.21619 1.21037 1.20803 0.98230 0.90307 0.86224 1.22170 0.96937 0.97004 1.00301 0.91810 0.91325 0.91996 0.92259 0.91699 0.91783 0.92474 0.93537 0.92572 0.90647 0.90272 0.77972 0.94584 0.90855 0.84597 0.91492 0.92250 0.93762 0.96699 0.92989 0.93588 0.96590 0.89390 0.92716 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.56 37.15 0.36 -0.59 16 2 C 0.08 0.61 3.34 -26.73 -0.09 0.52 16 3 C -0.18 -1.17 9.53 37.16 0.35 -0.81 16 4 O -0.39 -3.81 9.99 -35.23 -0.35 -4.16 16 5 C 0.07 0.59 5.64 37.16 0.21 0.80 16 6 C -0.15 -1.29 5.26 -26.74 -0.14 -1.43 16 7 C 0.11 1.11 3.14 -26.73 -0.08 1.03 16 8 H 0.10 0.95 8.14 -51.92 -0.42 0.52 16 9 O -0.55 -5.96 12.82 -35.23 -0.45 -6.41 16 10 C 0.03 0.33 5.12 -3.82 -0.02 0.31 16 11 N -0.68 -9.62 6.20 -106.68 -0.66 -10.28 16 12 C 0.10 1.63 2.43 -67.67 -0.16 1.46 16 13 C -0.16 -2.78 5.33 -26.61 -0.14 -2.92 16 14 C 0.15 3.18 6.52 -3.71 -0.02 3.15 16 15 N -0.59 -15.04 2.99 -172.33 -0.52 -15.55 16 16 C -0.25 -7.04 9.58 -15.06 -0.14 -7.19 16 17 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -26.48 11.19 55.49 0.62 -25.85 16 20 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 25 C -0.12 -2.46 5.69 -26.61 -0.15 -2.61 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 33 H 0.05 0.40 7.87 -51.93 -0.41 -0.01 16 34 H 0.06 0.50 7.76 -51.93 -0.40 0.10 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.37 3.02 9.05 45.56 0.41 3.43 16 38 H 0.04 0.41 7.41 -51.93 -0.38 0.02 16 39 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 40 H 0.34 4.65 8.48 -39.29 -0.33 4.32 16 41 H 0.07 1.18 7.80 -51.93 -0.40 0.78 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.67 7.42 -51.93 -0.39 0.29 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 46 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16 49 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 391.01 15.07 5.89 5.89 Total: -1.00 -30.73 391.01 -9.55 -40.28 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -8.91 Total: 3.40 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -0.15 Total: -4.19 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.56 Total: -51.69 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.80 Total: -10.57 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.73 -9.55 -40.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591736523.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.047 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds