Wall clock time and date at job start Tue Mar 31 2020 03:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47274 * 2 1 4 4 O 1.42904 * 109.47458 * 120.00134 * 2 1 3 5 5 C 1.42889 * 114.00467 * 150.00261 * 4 2 1 6 6 C 1.52996 * 109.47523 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47510 * 179.97438 * 6 5 4 8 8 H 1.09008 * 109.47206 * 55.00097 * 7 6 5 9 9 O 1.42903 * 109.47426 * 295.00152 * 7 6 5 10 10 C 1.53000 * 109.47270 * 174.99897 * 7 6 5 11 11 N 1.46904 * 109.46972 * 185.00207 * 10 7 6 12 12 C 1.46904 * 110.99799 * 180.02562 * 11 10 7 13 13 C 1.53045 * 109.46006 * 275.06851 * 12 11 10 14 14 C 1.53184 * 109.31357 * 178.61447 * 13 12 11 15 15 N 1.46925 * 108.77745 * 54.63525 * 14 13 12 16 16 C 1.36935 * 120.63233 * 126.41266 * 15 14 13 17 17 H 1.07994 * 120.00304 * 331.82058 * 16 15 14 18 18 C 1.38817 * 119.99974 * 151.82947 * 16 15 14 19 19 N 1.31625 * 119.99755 * 343.06966 * 18 16 15 20 20 Si 1.86797 * 120.00136 * 163.07988 * 18 16 15 21 21 H 1.48506 * 109.47133 * 59.99561 * 20 18 16 22 22 H 1.48501 * 109.47094 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46923 * 299.99404 * 20 18 16 24 24 C 1.46926 * 118.73941 * 306.39129 * 15 14 13 25 25 C 1.53040 * 109.46159 * 154.99989 * 12 11 10 26 26 H 1.08995 * 109.47669 * 299.99342 * 1 2 3 27 27 H 1.09002 * 109.47314 * 60.00189 * 1 2 3 28 28 H 1.09007 * 109.47025 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47533 * 239.99858 * 2 1 3 30 30 H 1.08997 * 109.47185 * 300.00389 * 3 2 1 31 31 H 1.09004 * 109.46956 * 59.99505 * 3 2 1 32 32 H 1.09000 * 109.47576 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47452 * 59.99802 * 5 4 2 34 34 H 1.09004 * 109.47092 * 300.00509 * 5 4 2 35 35 H 1.09005 * 109.47330 * 59.99831 * 6 5 4 36 36 H 1.09004 * 109.47330 * 300.00336 * 6 5 4 37 37 H 0.96697 * 113.99723 * 299.99940 * 9 7 6 38 38 H 1.08998 * 109.47412 * 304.99904 * 10 7 6 39 39 H 1.08997 * 109.47071 * 65.00841 * 10 7 6 40 40 H 1.00901 * 111.00054 * 56.04969 * 11 10 7 41 41 H 1.08996 * 109.46066 * 35.02870 * 12 11 10 42 42 H 1.09004 * 109.49708 * 298.56682 * 13 12 11 43 43 H 1.09001 * 109.49358 * 58.65968 * 13 12 11 44 44 H 1.08999 * 109.58811 * 294.85024 * 14 13 12 45 45 H 1.08998 * 109.70561 * 174.49286 * 14 13 12 46 46 H 0.97003 * 119.99690 * 180.02562 * 19 18 16 47 47 H 1.09004 * 109.58621 * 293.82173 * 24 15 14 48 48 H 1.08996 * 109.70972 * 173.46487 * 24 15 14 49 49 H 1.09002 * 109.49700 * 301.33882 * 25 12 11 50 50 H 1.09005 * 109.49567 * 61.39931 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2659 -1.3244 0.9887 6 6 3.6755 -2.0091 2.2942 7 6 5.0238 -2.7064 2.1033 8 1 5.7576 -1.9859 1.7417 9 8 4.8835 -3.7622 1.1506 10 6 5.4928 -3.2846 3.4399 11 7 6.8401 -3.8487 3.2837 12 6 7.3239 -4.4149 4.5500 13 6 7.9554 -3.3067 5.3958 14 6 8.4274 -3.8940 6.7295 15 7 9.3206 -5.0284 6.4571 16 6 10.5722 -5.0794 7.0102 17 1 11.0932 -4.1650 7.2524 18 6 11.1715 -6.3065 7.2593 19 7 10.4421 -7.4019 7.2853 20 14 13.0129 -6.4033 7.5578 21 1 13.3656 -5.5841 8.7452 22 1 13.4018 -7.8161 7.7984 23 1 13.7351 -5.8865 6.3676 24 6 8.8450 -6.1073 5.5805 25 6 8.3682 -5.4952 4.2595 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 4.0200 -0.5873 0.7125 34 1 3.1809 -2.0706 0.1986 35 1 2.9214 -2.7463 2.5699 36 1 3.7604 -1.2632 3.0845 37 1 4.2449 -4.4414 1.4074 38 1 5.5147 -2.4941 4.1901 39 1 4.8054 -4.0684 3.7579 40 1 7.4827 -3.1570 2.9277 41 1 6.4880 -4.8549 5.0938 42 1 8.8069 -2.8830 4.8631 43 1 7.2176 -2.5264 5.5825 44 1 7.5663 -4.2365 7.3032 45 1 8.9649 -3.1337 7.2962 46 1 10.8608 -8.2593 7.4598 47 1 8.0178 -6.6303 6.0604 48 1 9.6570 -6.8081 5.3864 49 1 7.9243 -6.2726 3.6376 50 1 9.2155 -5.0510 3.7370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591736523.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:31 Heat of formation + Delta-G solvation = -118.099522 kcal Electronic energy + Delta-G solvation = -24761.909554 eV Core-core repulsion = 21208.960588 eV Total energy + Delta-G solvation = -3552.948965 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 300.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.98762 -39.44483 -38.45591 -36.27535 -34.20952 -33.91488 -32.38579 -31.68785 -30.91442 -28.24376 -27.94592 -26.22370 -23.99718 -23.59991 -22.82959 -22.50272 -22.04939 -20.84293 -18.78938 -17.84238 -17.46018 -17.09976 -16.89623 -16.19882 -16.10006 -15.79496 -15.63061 -15.35631 -15.24058 -14.90453 -14.65605 -14.44408 -14.21109 -13.81926 -13.58525 -13.46225 -13.19902 -13.08592 -12.99835 -12.91641 -12.65503 -12.56485 -12.48955 -12.39850 -12.03539 -12.02383 -11.95048 -11.82225 -11.75444 -11.55553 -11.43176 -11.28090 -10.78608 -10.53475 -10.48730 -9.20648 -8.68817 -7.87865 -5.33539 1.46086 1.48967 1.55720 2.50986 2.58079 3.19712 3.30078 3.63305 3.70489 3.82819 3.95218 3.98897 4.07094 4.11861 4.14263 4.21365 4.28096 4.36102 4.40556 4.44220 4.52884 4.59819 4.67670 4.73561 4.75416 4.79800 4.86535 4.88968 4.91224 4.93584 4.98651 5.07284 5.11068 5.14605 5.25065 5.27367 5.28428 5.32585 5.33292 5.51944 5.64264 5.73704 6.14667 6.33315 6.39157 6.51062 6.93574 7.14487 7.85848 8.37733 9.18510 Molecular weight = 300.22amu Principal moments of inertia in cm(-1) A = 0.044543 B = 0.002078 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.458315 B =13473.977315 C =13673.402056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 C -0.173 4.173 4 O -0.405 6.405 5 C 0.068 3.932 6 C -0.141 4.141 7 C 0.125 3.875 8 H 0.096 0.904 9 O -0.566 6.566 10 C 0.030 3.970 11 N -0.679 5.679 12 C 0.108 3.892 13 C -0.145 4.145 14 C 0.144 3.856 15 N -0.610 5.610 16 C -0.265 4.265 17 H 0.065 0.935 18 C -0.052 4.052 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.275 1.275 22 H -0.293 1.293 23 H -0.279 1.279 24 C 0.178 3.822 25 C -0.111 4.111 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.384 0.616 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.341 0.659 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.012 0.988 45 H 0.052 0.948 46 H 0.250 0.750 47 H -0.005 1.005 48 H 0.052 0.948 49 H 0.062 0.938 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.518 15.137 -15.334 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 C -0.231 4.231 4 O -0.326 6.326 5 C -0.008 4.008 6 C -0.179 4.179 7 C 0.065 3.935 8 H 0.114 0.886 9 O -0.372 6.372 10 C -0.099 4.099 11 N -0.309 5.309 12 C -0.002 4.002 13 C -0.185 4.185 14 C 0.017 3.983 15 N -0.334 5.334 16 C -0.396 4.396 17 H 0.083 0.917 18 C -0.247 4.247 19 N -0.581 5.581 20 Si 0.796 3.204 21 H -0.200 1.200 22 H -0.219 1.219 23 H -0.205 1.205 24 C 0.051 3.949 25 C -0.150 4.150 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.233 0.767 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.159 0.841 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.030 0.970 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.013 0.987 48 H 0.071 0.929 49 H 0.080 0.920 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.367 14.729 -15.687 28.291 hybrid contribution 0.999 0.028 1.189 1.553 sum -17.368 14.758 -14.497 27.012 Atomic orbital electron populations 1.21874 0.92853 1.02675 1.03120 1.22277 0.95701 0.92799 0.87805 1.22288 1.01340 0.96368 1.03069 1.87876 1.37290 1.70440 1.36945 1.22430 0.85086 0.95335 0.97984 1.22115 0.97377 1.00806 0.97621 1.21703 0.95253 0.88571 0.87964 0.88593 1.86561 1.66798 1.37024 1.46849 1.22704 0.91127 0.98787 0.97306 1.60536 1.03683 1.39431 1.27239 1.21252 0.95933 0.94217 0.88763 1.22528 1.00133 0.98243 0.97644 1.20978 0.92533 0.89801 0.94939 1.44317 1.13630 1.21905 1.53565 1.19472 0.92447 0.92154 1.35495 0.91717 1.25831 1.02469 0.96028 1.00385 1.70185 1.35420 0.98410 1.54060 0.85331 0.80491 0.76304 0.78260 1.20035 1.21941 1.20466 1.20586 0.96160 0.89954 0.88150 1.21929 0.97614 0.98040 0.97442 0.92327 0.89490 0.92374 0.91748 0.90078 0.92360 0.92866 0.93278 0.92779 0.90387 0.90100 0.76696 0.93749 0.90694 0.84053 0.91854 0.92541 0.90628 0.96981 0.92978 0.94075 0.98714 0.92931 0.91960 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.56 71.98 0.69 -0.97 16 2 C 0.07 0.98 3.34 30.59 0.10 1.09 16 3 C -0.17 -2.04 9.53 71.98 0.69 -1.35 16 4 O -0.41 -7.45 9.99 -148.98 -1.49 -8.94 16 5 C 0.07 1.10 5.64 71.98 0.41 1.50 16 6 C -0.14 -2.12 5.26 30.59 0.16 -1.96 16 7 C 0.12 2.13 3.14 30.59 0.10 2.22 16 8 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 9 O -0.57 -11.07 12.82 -148.98 -1.91 -12.98 16 10 C 0.03 0.60 5.12 86.30 0.44 1.05 16 11 N -0.68 -17.61 6.20 -491.41 -3.04 -20.66 16 12 C 0.11 3.49 2.43 44.94 0.11 3.60 16 13 C -0.14 -4.72 5.33 30.67 0.16 -4.55 16 14 C 0.14 6.00 6.52 86.36 0.56 6.56 16 15 N -0.61 -31.33 2.99 -699.11 -2.09 -33.42 16 16 C -0.27 -14.91 9.58 84.03 0.81 -14.10 16 17 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 18 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 19 N -0.93 -56.34 11.19 21.65 0.24 -56.10 16 20 Si 0.97 45.53 29.59 68.60 2.03 47.56 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 C 0.18 8.84 5.30 86.36 0.46 9.30 16 25 C -0.11 -4.34 5.69 30.67 0.17 -4.16 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.06 0.80 7.79 -2.38 -0.02 0.78 16 30 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.05 0.66 7.87 -2.39 -0.02 0.64 16 33 H 0.05 0.75 7.87 -2.38 -0.02 0.73 16 34 H 0.05 0.88 7.76 -2.39 -0.02 0.86 16 35 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.38 5.46 9.05 -74.06 -0.67 4.79 16 38 H 0.04 0.85 7.41 -2.39 -0.02 0.83 16 39 H 0.07 1.51 8.05 -2.39 -0.02 1.49 16 40 H 0.34 8.51 8.48 -89.69 -0.76 7.75 16 41 H 0.06 2.12 7.80 -2.39 -0.02 2.11 16 42 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.08 2.03 7.42 -2.39 -0.02 2.01 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.05 2.13 7.93 -2.39 -0.02 2.12 16 46 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 47 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 48 H 0.05 2.97 6.07 -2.39 -0.01 2.95 16 49 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -66.28 391.01 -1.53 -67.81 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -0.54 Total: 21.05 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 5.27 Total: -4.32 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -4.89 Total: -110.18 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -3.40 Total: -21.92 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -66.28 -1.53 -67.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591736523.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.286 kcal (2) G-P(sol) polarization free energy of solvation -66.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds