Wall clock time and date at job start Tue Mar 31 2020 04:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 120.00104 * 2 1 4 4 C 1.50703 * 109.47476 * 270.00603 * 3 2 1 5 5 H 1.07997 * 119.99752 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00230 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00206 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 119.99943 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47373 * 89.99800 * 8 6 4 10 10 H 1.48501 * 109.46847 * 210.00099 * 8 6 4 11 11 H 1.48507 * 109.47084 * 329.99555 * 8 6 4 12 12 C 1.34778 * 119.99661 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99651 * 179.97438 * 12 2 1 14 14 C 1.50694 * 120.00314 * 359.97438 * 12 2 1 15 15 N 1.46504 * 109.47174 * 180.02562 * 14 12 2 16 16 C 1.35098 * 120.52636 * 269.91342 * 15 14 12 17 17 O 1.21776 * 120.40695 * 0.07705 * 16 15 14 18 18 C 1.46705 * 119.19618 * 179.97438 * 16 15 14 19 19 N 1.30219 * 120.23779 * 0.08643 * 18 16 15 20 20 C 1.34679 * 121.06098 * 359.97438 * 19 18 16 21 21 C 1.40356 * 120.09500 * 179.97438 * 20 19 18 22 22 C 1.36399 * 119.97336 * 179.97438 * 21 20 19 23 23 C 1.38901 * 120.67043 * 0.02562 * 22 21 20 24 24 C 1.37747 * 120.51173 * 0.02562 * 23 22 21 25 25 C 1.38045 * 120.52203 * 90.00231 * 15 14 12 26 26 H 1.08999 * 109.46969 * 269.99643 * 1 2 3 27 27 H 1.08996 * 109.46999 * 29.99363 * 1 2 3 28 28 H 1.08997 * 109.47409 * 149.99997 * 1 2 3 29 29 H 1.09002 * 109.47086 * 30.00410 * 3 2 1 30 30 H 1.08999 * 109.47277 * 150.00413 * 3 2 1 31 31 H 0.96998 * 120.00270 * 180.02562 * 7 6 4 32 32 H 1.09004 * 109.46733 * 60.00321 * 14 12 2 33 33 H 1.08997 * 109.47440 * 300.00726 * 14 12 2 34 34 H 1.07995 * 119.87825 * 180.02562 * 18 16 15 35 35 H 1.08004 * 120.01394 * 359.95668 * 21 20 19 36 36 H 1.07995 * 119.66597 * 180.02562 * 22 21 20 37 37 H 1.08004 * 119.74011 * 179.97438 * 23 22 21 38 38 H 1.08003 * 120.08656 * 180.27706 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0964 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.3455 3.2576 -2.9126 8 14 3.7330 3.9292 -0.2528 9 1 5.1066 3.5081 0.1230 10 1 3.7477 5.3560 -0.6642 11 1 2.8271 3.7592 0.9116 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3374 -3.5858 -0.0005 16 6 2.7820 -4.1086 -1.1642 17 8 2.3974 -3.6590 -2.2286 18 6 3.7355 -5.2230 -1.1302 19 7 4.1449 -5.7011 0.0097 20 6 3.7073 -5.1884 1.1757 21 6 4.1616 -5.7198 2.3928 22 6 3.7172 -5.1983 3.5722 23 6 2.8150 -4.1423 3.5848 24 6 2.3528 -3.6033 2.4044 25 6 2.7929 -4.1188 1.1886 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5138 31 1 3.8223 4.0835 -3.0898 32 1 0.7584 -2.5298 -0.8904 33 1 0.7590 -2.5302 0.8896 34 1 4.0984 -5.6489 -2.0539 35 1 4.8626 -6.5414 2.3954 36 1 4.0703 -5.6107 4.5058 37 1 2.4727 -3.7412 4.5273 38 1 1.6548 -2.7793 2.4222 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003425810.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:26 Heat of formation + Delta-G solvation = 8.272830 kcal Electronic energy + Delta-G solvation = -24322.505850 eV Core-core repulsion = 20745.253621 eV Total energy + Delta-G solvation = -3577.252229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82174 -39.25736 -38.66264 -36.43631 -35.85330 -34.99797 -32.60891 -30.88506 -30.09773 -29.50575 -27.90821 -26.01505 -24.95879 -23.72396 -22.92361 -21.73723 -19.20685 -19.08892 -18.71555 -17.35310 -17.00524 -16.91808 -15.68625 -15.47466 -15.38085 -15.17452 -15.08528 -14.70909 -14.24539 -14.17967 -13.74250 -13.51688 -13.10982 -12.82588 -12.44480 -12.21487 -12.16447 -12.14037 -11.94123 -11.85904 -11.57389 -11.18694 -11.03223 -10.94779 -10.58312 -10.20863 -9.59833 -9.48692 -9.30384 -8.87248 -8.62111 -8.12284 -7.86665 -6.10878 -4.10708 0.09155 0.96571 1.72948 2.24268 2.84225 3.05412 3.25632 3.31310 3.33287 3.60808 3.84596 3.89674 4.00029 4.36097 4.41380 4.58635 4.74781 4.78345 4.92879 5.00101 5.07293 5.16092 5.21625 5.38291 5.48353 5.51923 5.68100 5.77848 5.88954 6.03395 6.07849 6.15142 6.46772 6.57419 6.71865 6.83224 7.16773 7.46867 7.55354 7.71028 8.02871 8.41748 8.72427 8.93524 9.47861 11.02517 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.018242 B = 0.004370 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.585292 B = 6405.084454 C = 6862.212101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.592 5.592 3 C 0.217 3.783 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.876 3.124 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.495 3.505 13 O -0.525 6.525 14 C 0.075 3.925 15 N -0.494 5.494 16 C 0.491 3.509 17 O -0.503 6.503 18 C 0.099 3.901 19 N -0.405 5.405 20 C 0.016 3.984 21 C -0.034 4.034 22 C -0.152 4.152 23 C -0.058 4.058 24 C -0.160 4.160 25 C 0.170 3.830 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.036 0.964 31 H 0.265 0.735 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.196 0.804 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 -17.741 14.201 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.325 5.325 3 C 0.097 3.903 4 C -0.571 4.571 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.191 1.191 12 C 0.279 3.721 13 O -0.401 6.401 14 C -0.050 4.050 15 N -0.211 5.211 16 C 0.282 3.718 17 O -0.375 6.375 18 C -0.100 4.100 19 N -0.115 5.115 20 C -0.095 4.095 21 C -0.053 4.053 22 C -0.171 4.171 23 C -0.077 4.077 24 C -0.181 4.181 25 C 0.066 3.934 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.212 0.788 35 H 0.159 0.841 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.619 -17.873 13.659 22.964 hybrid contribution -0.277 1.572 0.445 1.657 sum -4.895 -16.301 14.103 22.104 Atomic orbital electron populations 1.21757 0.80629 1.03516 1.00695 1.47812 1.06425 1.06820 1.71394 1.19706 0.92394 0.79581 0.98618 1.21313 1.37345 1.07258 0.91161 0.90668 1.24859 0.95162 0.97322 0.95590 1.69897 1.41203 1.23513 1.18658 0.86853 0.80115 0.79852 0.82855 1.19927 1.20933 1.19091 1.20317 0.88421 0.85018 0.78370 1.90722 1.13482 1.86706 1.49206 1.21872 0.91705 0.84922 1.06509 1.45312 1.40238 1.30027 1.05556 1.19963 0.83361 0.85162 0.83290 1.90943 1.57060 1.61376 1.28071 1.26097 0.94093 0.92378 0.97387 1.67848 1.19919 1.25829 0.97897 1.18321 1.00568 0.97522 0.93085 1.20758 0.96976 0.98150 0.89434 1.20791 0.99803 0.98311 0.98218 1.21192 0.94520 0.94325 0.97632 1.20856 1.04179 1.02537 0.90516 1.18879 0.94429 0.93525 0.86574 0.93212 0.89945 0.92161 0.94916 0.94587 0.92484 0.85547 0.86654 0.78751 0.84144 0.84863 0.84784 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.11 10.24 59.85 0.61 1.72 16 2 N -0.59 -11.95 2.86 -182.96 -0.52 -12.47 16 3 C 0.22 5.30 4.23 -5.19 -0.02 5.28 16 4 C -0.53 -15.56 9.94 -34.44 -0.34 -15.91 16 5 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 6 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 7 N -0.89 -28.05 13.96 55.43 0.77 -27.28 16 8 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 12 C 0.49 10.10 7.74 -10.99 -0.09 10.01 16 13 O -0.53 -13.29 16.01 5.55 0.09 -13.20 16 14 C 0.07 1.12 3.95 -5.19 -0.02 1.10 16 15 N -0.49 -7.85 2.15 -115.96 -0.25 -8.10 16 16 C 0.49 8.38 7.64 -12.70 -0.10 8.29 16 17 O -0.50 -10.15 16.81 5.12 0.09 -10.06 16 18 C 0.10 1.36 11.44 -14.82 -0.17 1.19 16 19 N -0.40 -5.51 10.34 -9.24 -0.10 -5.60 16 20 C 0.02 0.22 6.57 -84.88 -0.56 -0.34 16 21 C -0.03 -0.35 9.95 -39.45 -0.39 -0.74 16 22 C -0.15 -1.27 9.96 -40.00 -0.40 -1.67 16 23 C -0.06 -0.51 10.02 -39.52 -0.40 -0.91 16 24 C -0.16 -1.83 9.21 -39.41 -0.36 -2.20 16 25 C 0.17 2.39 6.52 -83.77 -0.55 1.84 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 28 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 29 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 30 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 31 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 32 H 0.13 1.83 6.74 -51.93 -0.35 1.48 16 33 H 0.12 1.21 6.21 -51.93 -0.32 0.89 16 34 H 0.20 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.13 1.37 6.19 -52.48 -0.33 1.04 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -38.92 327.59 -6.71 -45.63 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.18 Total: -0.59 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -2.87 Total: 9.74 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.09 Total: -53.45 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.17 Total: -23.26 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -38.92 -6.71 -45.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003425810.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.900 kcal (2) G-P(sol) polarization free energy of solvation -38.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds