Wall clock time and date at job start Tue Mar 31 2020 03:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.38541 * 126.38832 * 2 1 4 4 C 1.38658 * 133.87849 * 359.96308 * 3 2 1 5 5 C 1.37975 * 119.84941 * 180.36430 * 4 3 2 6 6 C 1.38697 * 120.43681 * 359.95343 * 5 4 3 7 7 C 1.37691 * 120.49683 * 0.04449 * 6 5 4 8 8 C 1.39727 * 119.77518 * 359.97438 * 7 6 5 9 9 N 1.35878 * 133.37481 * 179.97438 * 8 7 6 10 10 C 1.31050 * 109.62119 * 179.97438 * 9 8 7 11 11 S 1.76204 * 125.07889 * 180.02562 * 10 9 8 12 12 C 1.80995 * 99.99915 * 0.02562 * 11 10 9 13 13 C 1.52997 * 109.47293 * 180.02562 * 12 11 10 14 14 H 1.09004 * 109.46881 * 54.99844 * 13 12 11 15 15 C 1.47201 * 109.47013 * 295.00681 * 13 12 11 16 16 N 6.26873 * 94.08710 * 158.99989 * 2 1 3 17 17 C 1.52997 * 109.47504 * 175.00205 * 13 12 11 18 18 C 1.50701 * 109.47212 * 184.99949 * 17 13 12 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 13 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 13 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 H 1.09000 * 109.47303 * 270.18805 * 1 2 3 27 27 H 1.09003 * 109.47194 * 30.18940 * 1 2 3 28 28 H 1.09003 * 109.47207 * 150.18603 * 1 2 3 29 29 H 1.07995 * 120.07536 * 0.35937 * 4 3 2 30 30 H 1.08003 * 119.78092 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.75465 * 180.02562 * 6 5 4 32 32 H 1.08000 * 120.11578 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.46951 * 60.00483 * 12 11 10 34 34 H 1.08998 * 109.47323 * 300.00481 * 12 11 10 35 35 H 1.09002 * 109.47153 * 64.99951 * 17 13 12 36 36 H 1.09001 * 109.46832 * 305.00142 * 17 13 12 37 37 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2869 1.1153 0.0000 4 6 2.0524 2.4819 -0.0006 5 6 3.1158 3.3611 -0.0080 6 6 4.4193 2.8871 -0.0139 7 6 4.6706 1.5333 -0.0133 8 6 3.6048 0.6298 -0.0062 9 7 3.5317 -0.7270 -0.0043 10 6 2.2755 -1.1001 0.0038 11 16 1.7152 -2.7707 0.0097 12 6 3.3052 -3.6354 0.0022 13 6 3.0640 -5.1463 0.0054 14 1 2.4201 -5.4132 -0.8327 15 6 2.4142 -5.5367 1.2671 16 7 1.9117 -5.8375 2.2408 17 6 4.4020 -5.8766 -0.1266 18 6 4.1557 -7.3585 -0.2469 19 1 3.1458 -7.7411 -0.2313 20 6 5.2195 -8.2257 -0.3780 21 7 6.4491 -7.7598 -0.3975 22 14 4.9141 -10.0624 -0.5279 23 1 3.4537 -10.3271 -0.4793 24 1 5.4628 -10.5518 -1.8182 25 1 5.5831 -10.7686 0.5942 26 1 -0.3634 0.0034 1.0276 27 1 -0.3634 0.8883 -0.5168 28 1 -0.3634 -0.8917 -0.5110 29 1 1.0399 2.8573 0.0045 30 1 2.9319 4.4253 -0.0090 31 1 5.2434 3.5852 -0.0192 32 1 5.6880 1.1711 -0.0183 33 1 3.8748 -3.3562 0.8886 34 1 3.8649 -3.3590 -0.8913 35 1 5.0117 -5.6801 0.7553 36 1 4.9235 -5.5216 -1.0154 37 1 7.1976 -8.3699 -0.4894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007034047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:13 Heat of formation + Delta-G solvation = 71.525409 kcal Electronic energy + Delta-G solvation = -20358.464502 eV Core-core repulsion = 17226.707981 eV Total energy + Delta-G solvation = -3131.756521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 301.094 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.96636 -38.47252 -38.17792 -35.81212 -35.27410 -34.15264 -31.39985 -30.49242 -29.56476 -27.89348 -25.95090 -24.54117 -23.64002 -23.05496 -21.82369 -19.04053 -18.44714 -18.22226 -18.18243 -17.51010 -16.97287 -16.74287 -16.00484 -15.46445 -15.24569 -15.03441 -14.97120 -14.62645 -14.32030 -14.18494 -14.02881 -13.70305 -13.66198 -13.22499 -13.03591 -12.86574 -12.76905 -12.68356 -12.44896 -12.40201 -12.20143 -11.88721 -11.40146 -11.38021 -11.21242 -11.04738 -10.56837 -10.07763 -9.12973 -8.55714 -8.20008 -6.29176 -0.12339 -0.04568 0.54066 0.87801 1.40560 1.43522 1.53888 1.57796 1.75177 1.84062 1.89035 2.41834 2.89321 3.03352 3.16925 3.35363 3.75474 3.78241 3.98650 4.07118 4.13808 4.28963 4.39239 4.47219 4.48056 4.57286 4.62292 4.66599 4.82056 4.83849 5.15956 5.39853 5.44313 5.54242 5.55908 5.57777 5.76950 5.90550 5.93406 6.14490 6.64698 6.65276 6.84590 7.39777 8.91223 Molecular weight = 301.09amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.003045 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.794380 B = 9194.618111 C =10011.821581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.479 5.479 3 C 0.036 3.964 4 C -0.112 4.112 5 C -0.097 4.097 6 C -0.120 4.120 7 C -0.091 4.091 8 C 0.016 3.984 9 N -0.527 5.527 10 C 0.246 3.754 11 S 0.009 5.991 12 C -0.081 4.081 13 C 0.035 3.965 14 H 0.137 0.863 15 C 0.245 3.755 16 N -0.484 5.484 17 C 0.043 3.957 18 C -0.539 4.539 19 H 0.060 0.940 20 C 0.011 3.989 21 N -0.923 5.923 22 Si 0.951 3.049 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.286 1.286 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.150 0.850 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.004 0.996 36 H 0.040 0.960 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.060 24.053 -3.014 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.172 5.172 3 C -0.074 4.074 4 C -0.133 4.133 5 C -0.117 4.117 6 C -0.140 4.140 7 C -0.111 4.111 8 C -0.104 4.104 9 N -0.252 5.252 10 C -0.127 4.127 11 S 0.241 5.759 12 C -0.231 4.231 13 C 0.012 3.988 14 H 0.154 0.846 15 C -0.072 4.072 16 N -0.161 5.161 17 C 0.003 3.997 18 C -0.577 4.577 19 H 0.078 0.922 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.777 3.223 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.212 1.212 26 H 0.106 0.894 27 H 0.132 0.868 28 H 0.115 0.885 29 H 0.168 0.832 30 H 0.185 0.815 31 H 0.176 0.824 32 H 0.145 0.855 33 H 0.109 0.891 34 H 0.141 0.859 35 H 0.023 0.977 36 H 0.058 0.942 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.263 22.551 -1.558 25.717 hybrid contribution 1.172 -0.352 -0.241 1.247 sum -11.091 22.199 -1.799 24.881 Atomic orbital electron populations 1.22361 0.73366 1.06424 1.04990 1.45293 1.08201 1.03081 1.60603 1.19332 0.90359 0.90364 1.07365 1.20332 1.01683 0.87299 1.03965 1.21374 0.91153 1.00849 0.98329 1.21299 0.98582 0.93800 1.00319 1.20567 0.97101 0.92570 1.00859 1.19565 0.94197 0.89886 1.06782 1.70935 1.16799 1.12455 1.24989 1.25551 0.88535 0.95328 1.03296 1.85363 1.11477 0.86790 1.92228 1.23586 0.96455 0.94425 1.08657 1.18916 0.99357 0.91820 0.88748 0.84571 1.29324 0.91738 0.91618 0.94549 1.81028 1.12087 1.10330 1.12670 1.19023 0.89216 0.93728 0.97777 1.21536 0.93108 0.92753 1.50286 0.92183 1.25735 0.94981 1.03181 0.94898 1.70051 0.98941 1.36447 1.50858 0.85596 0.78505 0.80414 0.77780 1.19063 1.19882 1.21211 0.89409 0.86834 0.88529 0.83235 0.81508 0.82356 0.85477 0.89111 0.85901 0.97737 0.94214 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 10.97 127.77 1.40 2.36 16 2 N -0.48 -11.52 3.24 -538.95 -1.74 -13.26 16 3 C 0.04 0.89 6.87 38.72 0.27 1.16 16 4 C -0.11 -1.87 10.04 22.31 0.22 -1.65 16 5 C -0.10 -1.32 10.03 22.32 0.22 -1.10 16 6 C -0.12 -1.96 10.01 22.25 0.22 -1.74 16 7 C -0.09 -2.19 10.10 22.50 0.23 -1.96 16 8 C 0.02 0.47 7.22 39.42 0.28 0.76 16 9 N -0.53 -17.82 10.57 -188.40 -1.99 -19.81 16 10 C 0.25 7.29 7.93 179.59 1.42 8.72 16 11 S 0.01 0.24 20.94 -56.49 -1.18 -0.94 16 12 C -0.08 -2.56 4.57 71.98 0.33 -2.23 16 13 C 0.03 1.25 2.21 -12.60 -0.03 1.22 16 14 H 0.14 4.28 8.14 -2.39 -0.02 4.26 16 15 C 0.24 9.81 13.31 89.44 1.19 11.00 16 16 N -0.48 -21.00 18.54 20.01 0.37 -20.63 16 17 C 0.04 1.97 4.42 29.85 0.13 2.10 16 18 C -0.54 -28.16 8.60 25.60 0.22 -27.94 16 19 H 0.06 3.07 7.59 -2.91 -0.02 3.04 16 20 C 0.01 0.61 5.46 84.66 0.46 1.07 16 21 N -0.92 -53.14 13.29 21.45 0.28 -52.86 16 22 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 26 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 1.25 7.68 -2.39 -0.02 1.23 16 29 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 30 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 31 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 33 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.12 3.74 8.14 -2.40 -0.02 3.72 16 35 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -70.63 341.98 5.42 -65.20 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.08 Total: 5.36 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 6.58 Total: -8.22 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -3.08 Total: -106.56 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.18 Total: -0.94 kcal Total: -70.63 5.42 -65.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007034047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.730 kcal (2) G-P(sol) polarization free energy of solvation -70.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds