Wall clock time and date at job start Tue Mar 31 2020 04:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47252 * 2 1 4 4 C 1.34036 * 118.53939 * 265.01811 * 3 2 1 5 5 C 1.37953 * 122.28673 * 179.97438 * 4 3 2 6 6 C 1.47061 * 120.62569 * 180.02562 * 5 4 3 7 7 O 1.21668 * 119.99961 * 179.97438 * 6 5 4 8 8 N 1.34780 * 120.00195 * 0.02562 * 6 5 4 9 9 C 1.36955 * 120.00186 * 180.02562 * 8 6 5 10 10 H 1.08005 * 119.99916 * 359.97438 * 9 8 6 11 11 C 1.38982 * 120.00190 * 179.97438 * 9 8 6 12 12 N 1.31414 * 119.99989 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00179 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46905 * 89.99961 * 13 11 9 15 15 H 1.48497 * 109.47385 * 209.99902 * 13 11 9 16 16 H 1.48496 * 109.47088 * 329.99937 * 13 11 9 17 17 C 1.47259 * 118.74698 * 359.97438 * 5 4 3 18 18 O 1.21855 * 121.45295 * 179.97438 * 17 5 4 19 19 C 1.47332 * 117.09608 * 0.02562 * 17 5 4 20 20 C 1.39671 * 121.35565 * 179.97438 * 19 17 5 21 21 C 1.38297 * 117.96968 * 180.30050 * 20 19 17 22 22 C 1.38636 * 119.30414 * 359.41363 * 21 20 19 23 23 C 1.50696 * 119.18234 * 180.27835 * 22 21 20 24 24 N 1.31612 * 121.63173 * 0.62795 * 22 21 20 25 25 C 1.32770 * 121.75977 * 359.67311 * 24 22 21 26 26 H 1.08992 * 109.47517 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46964 * 300.00526 * 1 2 3 28 28 H 1.09008 * 109.47056 * 59.99550 * 1 2 3 29 29 H 1.09000 * 109.47216 * 239.99913 * 2 1 3 30 30 H 1.09000 * 109.46863 * 119.99841 * 2 1 3 31 31 H 1.08005 * 118.85287 * 359.97438 * 4 3 2 32 32 H 0.97000 * 119.99910 * 359.97438 * 8 6 5 33 33 H 0.96998 * 119.99932 * 179.97438 * 12 11 9 34 34 H 1.08002 * 121.01249 * 0.02562 * 20 19 17 35 35 H 1.07998 * 120.34317 * 179.72141 * 21 20 19 36 36 H 1.08999 * 109.47350 * 270.34067 * 23 22 21 37 37 H 1.09000 * 109.47182 * 30.33963 * 23 22 21 38 38 H 1.09003 * 109.47309 * 150.34370 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3282 1.9508 -1.1730 5 6 2.7940 3.2462 -1.2629 6 6 3.1225 3.8353 -2.5697 7 8 3.5320 4.9790 -2.6358 8 7 2.9690 3.1084 -3.6943 9 6 3.2754 3.6568 -4.9113 10 1 3.6397 4.6719 -4.9699 11 6 3.1176 2.9072 -6.0709 12 7 2.6747 1.6720 -5.9997 13 14 3.5348 3.6554 -7.7309 14 1 4.9607 3.3892 -8.0495 15 1 2.6725 3.0503 -8.7775 16 1 3.3032 5.1215 -7.6853 17 6 2.9549 4.0284 -0.0257 18 8 3.3629 5.1764 -0.0477 19 6 2.6024 3.3621 1.2402 20 6 2.7214 4.0208 2.4660 21 6 2.3770 3.3267 3.6115 22 6 1.9198 2.0224 3.5029 23 6 1.5393 1.2707 4.7524 24 7 1.8163 1.4221 2.3363 25 6 2.1379 2.0358 1.2036 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2091 1.3756 -2.0794 32 1 2.6421 2.1967 -3.6417 33 1 2.5642 1.1489 -6.8090 34 1 3.0759 5.0397 2.5181 35 1 2.4586 3.7975 4.5800 36 1 2.4131 0.7493 5.1431 37 1 1.1704 1.9725 5.5004 38 1 0.7591 0.5467 4.5175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012409675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:22 Heat of formation + Delta-G solvation = -12.561668 kcal Electronic energy + Delta-G solvation = -23992.612535 eV Core-core repulsion = 20414.456854 eV Total energy + Delta-G solvation = -3578.155681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38097 -38.84750 -38.12715 -37.32732 -33.90427 -33.49484 -32.46123 -32.25433 -31.13694 -29.45361 -28.13709 -25.25832 -24.53210 -23.77260 -23.03231 -21.33981 -20.32176 -18.50226 -18.15856 -17.74515 -17.08250 -15.83134 -15.54683 -15.31388 -15.18595 -14.67633 -14.36711 -14.19078 -14.07621 -13.77987 -13.69756 -13.37300 -13.07226 -12.99929 -12.67604 -12.54250 -12.34950 -12.25263 -12.05282 -11.57702 -11.40129 -11.29996 -11.09734 -10.40323 -10.26808 -9.96693 -9.89048 -9.56715 -9.22048 -9.04817 -8.29033 -8.00566 -7.59636 -6.50019 -3.81879 0.64842 0.79109 1.77389 2.40814 2.98694 3.21013 3.25391 3.32340 3.84798 3.90806 4.10370 4.36624 4.48549 4.49354 4.53006 4.73783 4.86944 4.97090 5.01027 5.15347 5.18391 5.29015 5.29854 5.34958 5.38836 5.51402 5.54095 5.66778 5.71851 5.85331 5.88349 6.01303 6.15447 6.34857 6.59157 6.78453 6.96603 7.49933 7.74692 8.03044 8.26655 8.58828 9.14976 9.48879 10.08139 10.67966 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.022998 B = 0.004013 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.223937 B = 6974.993517 C = 8090.485456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 N -0.477 5.477 4 C 0.165 3.835 5 C -0.271 4.271 6 C 0.497 3.503 7 O -0.569 6.569 8 N -0.559 5.559 9 C -0.285 4.285 10 H 0.107 0.893 11 C 0.020 3.980 12 N -0.899 5.899 13 Si 0.933 3.067 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.268 1.268 17 C 0.432 3.568 18 O -0.447 6.447 19 C -0.241 4.241 20 C 0.016 3.984 21 C -0.222 4.222 22 C 0.190 3.810 23 C -0.105 4.105 24 N -0.525 5.525 25 C 0.391 3.609 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.171 0.829 32 H 0.387 0.613 33 H 0.273 0.727 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 -8.648 18.589 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.025 4.025 3 N -0.169 5.169 4 C 0.036 3.964 5 C -0.283 4.283 6 C 0.285 3.715 7 O -0.452 6.452 8 N -0.196 5.196 9 C -0.415 4.415 10 H 0.125 0.875 11 C -0.182 4.182 12 N -0.540 5.540 13 Si 0.760 3.240 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.192 1.192 17 C 0.312 3.688 18 O -0.323 6.323 19 C -0.247 4.247 20 C -0.010 4.010 21 C -0.243 4.243 22 C 0.047 3.953 23 C -0.163 4.163 24 N -0.241 5.241 25 C 0.160 3.840 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.187 0.813 32 H 0.221 0.779 33 H 0.083 0.917 34 H 0.167 0.833 35 H 0.158 0.842 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.053 -8.378 18.241 20.699 hybrid contribution 0.200 0.334 -0.880 0.962 sum -4.853 -8.045 17.361 19.740 Atomic orbital electron populations 1.22131 0.94445 1.02949 1.03065 1.22033 0.95850 0.79750 1.04909 1.42674 1.57284 1.14319 1.02661 1.22055 0.92299 0.94282 0.87779 1.22462 1.14108 0.94340 0.97390 1.16968 0.85355 0.86939 0.82268 1.90699 1.50714 1.17825 1.86010 1.41848 1.57821 1.14633 1.05267 1.19823 1.39468 1.00080 0.82100 0.87501 1.25291 0.97299 0.95547 1.00077 1.69585 1.45619 1.08572 1.30258 0.85799 0.78322 0.79382 0.80533 1.20304 1.20872 1.19241 1.19375 0.76396 0.87085 0.85925 1.90711 1.36621 1.17040 1.87973 1.21068 1.10988 0.94969 0.97715 1.21546 0.89639 0.99750 0.90056 1.21805 1.06909 0.95991 0.99617 1.21161 0.90611 0.91329 0.92186 1.20788 1.02695 1.00336 0.92436 1.66949 1.22302 1.37909 0.96944 1.18125 0.92103 0.87962 0.85829 0.90748 0.91810 0.91899 0.88757 0.88300 0.81251 0.77892 0.91715 0.83303 0.84176 0.89967 0.90263 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.20 37.16 0.38 -1.17 16 2 C 0.10 0.96 5.91 -4.05 -0.02 0.94 16 3 N -0.48 -6.60 2.62 -116.01 -0.30 -6.90 16 4 C 0.17 2.68 9.73 -16.69 -0.16 2.52 16 5 C -0.27 -5.74 6.05 -102.76 -0.62 -6.37 16 6 C 0.50 12.99 7.71 -12.68 -0.10 12.89 16 7 O -0.57 -17.42 15.14 -14.82 -0.22 -17.65 16 8 N -0.56 -14.39 5.23 -12.05 -0.06 -14.45 16 9 C -0.29 -7.99 9.68 -14.99 -0.15 -8.13 16 10 H 0.11 3.17 7.15 -52.48 -0.38 2.79 16 11 C 0.02 0.52 5.50 -17.45 -0.10 0.42 16 12 N -0.90 -23.57 13.05 55.50 0.72 -22.85 16 13 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C 0.43 9.16 7.15 -32.22 -0.23 8.93 16 18 O -0.45 -11.05 15.91 -14.99 -0.24 -11.29 16 19 C -0.24 -4.01 5.89 -104.78 -0.62 -4.63 16 20 C 0.02 0.21 9.77 -39.02 -0.38 -0.17 16 21 C -0.22 -2.31 9.72 -39.41 -0.38 -2.69 16 22 C 0.19 1.99 6.78 -82.54 -0.56 1.43 16 23 C -0.11 -0.67 10.14 36.00 0.37 -0.31 16 24 N -0.53 -6.60 8.97 -8.51 -0.08 -6.68 16 25 C 0.39 5.79 7.31 -155.57 -1.14 4.65 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.09 0.79 7.83 -51.93 -0.41 0.38 16 30 H 0.10 0.93 7.43 -51.93 -0.39 0.55 16 31 H 0.17 2.46 6.12 -52.48 -0.32 2.14 16 32 H 0.39 9.05 5.91 -40.82 -0.24 8.81 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.15 1.91 7.85 -52.49 -0.41 1.50 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 330.76 15.07 4.98 4.98 Total: -1.00 -35.90 330.76 -8.17 -44.07 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.23 Total: 6.61 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -3.71 Total: 8.31 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.28 Total: -50.88 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.46 Total: -28.93 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.90 -8.17 -44.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012409675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.505 kcal (2) G-P(sol) polarization free energy of solvation -35.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds