Wall clock time and date at job start Tue Mar 31 2020 03:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00277 * 2 1 4 4 C 1.50697 * 109.47478 * 270.00151 * 3 2 1 5 5 H 1.07999 * 119.99609 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00202 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99887 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00113 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46997 * 60.00295 * 8 6 4 10 10 H 1.48501 * 109.47025 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47333 * 300.00086 * 8 6 4 12 12 C 1.34771 * 119.99778 * 180.02562 * 2 1 3 13 13 O 1.21276 * 120.00222 * 179.97438 * 12 2 1 14 14 C 1.50709 * 120.00247 * 359.97438 * 12 2 1 15 15 C 1.50693 * 109.47444 * 180.02562 * 14 12 2 16 16 C 1.38233 * 120.00207 * 89.99457 * 15 14 12 17 17 C 1.38234 * 120.00037 * 179.72405 * 16 15 14 18 18 C 1.38234 * 120.00240 * 0.26327 * 17 16 15 19 19 C 1.50700 * 120.00260 * 179.97438 * 18 17 16 20 20 F 1.39904 * 109.46998 * 89.99804 * 19 18 17 21 21 F 1.39906 * 109.47073 * 209.99959 * 19 18 17 22 22 F 1.39899 * 109.47068 * 330.00293 * 19 18 17 23 23 C 1.38238 * 119.99693 * 0.02562 * 18 17 16 24 24 C 1.38234 * 120.00047 * 359.95697 * 23 18 17 25 25 H 1.08997 * 109.46910 * 269.99740 * 1 2 3 26 26 H 1.08998 * 109.46862 * 29.99912 * 1 2 3 27 27 H 1.08998 * 109.47485 * 149.99487 * 1 2 3 28 28 H 1.09004 * 109.46839 * 30.00473 * 3 2 1 29 29 H 1.08998 * 109.47010 * 150.00204 * 3 2 1 30 30 H 0.97005 * 120.00060 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46880 * 60.00277 * 14 12 2 32 32 H 1.09001 * 109.46663 * 300.00161 * 14 12 2 33 33 H 1.08002 * 120.00157 * 0.02562 * 16 15 14 34 34 H 1.07999 * 120.00009 * 180.28389 * 17 16 15 35 35 H 1.08001 * 119.99658 * 179.97438 * 23 18 17 36 36 H 1.07999 * 119.99990 * 180.02562 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2416 6 6 3.1261 2.8779 -1.6726 7 7 3.5535 3.6179 -0.6730 8 14 3.4369 3.4176 -3.4338 9 1 2.1391 3.5950 -4.1334 10 1 4.1795 4.7036 -3.4337 11 1 4.2395 2.3831 -4.1343 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3853 -2.4724 -0.0005 15 6 2.3645 -3.6178 -0.0005 16 6 2.8137 -4.1431 1.1966 17 6 3.7076 -5.1976 1.1966 18 6 4.1564 -5.7232 -0.0006 19 6 5.1313 -6.8724 -0.0006 20 9 4.4271 -8.0813 -0.0031 21 9 5.9375 -6.8000 -1.1417 22 9 5.9342 -6.8028 1.1429 23 6 3.7118 -5.1940 -1.1977 24 6 2.8176 -4.1397 -1.1977 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5138 30 1 4.0297 4.4442 -0.8502 31 1 0.7584 -2.5299 -0.8903 32 1 0.7590 -2.5302 0.8897 33 1 2.4626 -3.7329 2.1319 34 1 4.0550 -5.6110 2.1318 35 1 4.0628 -5.6044 -2.1330 36 1 2.4700 -3.7265 -2.1330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051770745.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:33 Heat of formation + Delta-G solvation = -183.559140 kcal Electronic energy + Delta-G solvation = -23813.259016 eV Core-core repulsion = 19653.538836 eV Total energy + Delta-G solvation = -4159.720179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.19947 -48.72202 -48.66013 -41.07405 -39.85837 -36.56308 -34.82112 -34.29197 -32.08273 -30.67065 -29.13176 -27.25960 -26.19951 -24.55987 -23.93884 -22.38480 -20.01608 -19.53444 -19.45026 -19.40327 -18.68222 -17.82251 -17.24541 -16.72046 -16.55682 -15.98001 -15.81880 -15.57352 -15.48331 -15.37527 -15.12993 -14.91305 -14.82867 -14.48344 -14.43852 -14.27520 -13.80880 -13.62935 -13.44908 -13.40132 -13.08896 -12.97219 -12.73012 -12.55123 -12.23188 -12.18068 -12.10168 -11.70978 -10.71616 -10.63864 -10.01770 -9.96342 -9.38727 -8.21983 -6.36994 -0.10339 0.31995 1.36869 1.41084 1.48188 1.63197 1.87536 2.25566 2.39425 2.68743 2.69959 3.00146 3.07751 3.40464 3.64758 3.79673 3.90246 3.95358 4.27164 4.32664 4.47770 4.57099 4.59166 4.76203 4.78653 4.96310 5.01028 5.04144 5.16633 5.17916 5.25172 5.50057 5.57068 5.79177 5.85662 6.06857 6.70858 6.82308 7.29385 7.51869 8.84727 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.003259 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.504604 B = 8588.353886 C = 9230.301586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.543 4.543 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.966 3.034 9 H -0.258 1.258 10 H -0.280 1.280 11 H -0.278 1.278 12 C 0.496 3.504 13 O -0.594 6.594 14 C -0.094 4.094 15 C -0.039 4.039 16 C -0.115 4.115 17 C -0.076 4.076 18 C -0.201 4.201 19 C 0.514 3.486 20 F -0.177 7.177 21 F -0.182 7.182 22 F -0.180 7.180 23 C -0.077 4.077 24 C -0.118 4.118 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.022 0.978 29 H -0.005 1.005 30 H 0.267 0.733 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.950 -20.400 1.976 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.074 0.926 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.790 3.210 9 H -0.183 1.183 10 H -0.205 1.205 11 H -0.204 1.204 12 C 0.285 3.715 13 O -0.475 6.475 14 C -0.133 4.133 15 C -0.040 4.040 16 C -0.132 4.132 17 C -0.093 4.093 18 C -0.203 4.203 19 C 0.460 3.540 20 F -0.159 7.159 21 F -0.163 7.163 22 F -0.162 7.162 23 C -0.095 4.095 24 C -0.136 4.136 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.040 0.960 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.241 -20.242 2.030 21.279 hybrid contribution 0.841 0.620 -0.710 1.263 sum -5.400 -19.622 1.319 20.395 Atomic orbital electron populations 1.21991 0.77643 1.04232 1.02793 1.48191 1.08519 1.06233 1.71330 1.18719 0.91051 0.80574 0.95876 1.21705 1.36790 1.06504 0.93178 0.92647 1.25863 0.94958 0.96510 1.01896 1.70045 1.38969 1.14808 1.33118 0.85491 0.78893 0.77309 0.79268 1.18272 1.20516 1.20379 1.21203 0.87795 0.86259 0.76196 1.90679 1.16669 1.88073 1.52075 1.20848 0.97178 0.87099 1.08158 1.19849 0.96002 0.94278 0.93856 1.21264 0.97357 0.95903 0.98713 1.21104 0.95410 0.95524 0.97311 1.20043 1.03323 0.99805 0.97087 1.18262 0.79902 0.82535 0.73278 1.93213 1.78536 1.47974 1.96150 1.93181 1.75218 1.96438 1.51453 1.93179 1.75365 1.96454 1.51170 1.21074 0.95478 0.95535 0.97390 1.21249 0.97502 0.96009 0.98798 0.90925 0.91854 0.88160 0.95956 0.98641 0.92447 0.85048 0.84464 0.83277 0.83133 0.83464 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.97 10.24 127.77 1.31 3.28 16 2 N -0.61 -24.31 2.86 -851.15 -2.43 -26.74 16 3 C 0.26 13.74 5.16 85.63 0.44 14.18 16 4 C -0.54 -30.88 9.39 25.60 0.24 -30.64 16 5 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.38 5.46 84.65 0.46 0.84 16 7 N -0.93 -56.19 13.29 21.44 0.28 -55.90 16 8 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 9 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 C 0.50 18.97 7.67 87.66 0.67 19.65 16 13 O -0.59 -29.65 15.61 -3.02 -0.05 -29.70 16 14 C -0.09 -2.15 4.38 29.10 0.13 -2.03 16 15 C -0.04 -0.98 4.37 -19.87 -0.09 -1.07 16 16 C -0.11 -2.64 9.70 22.27 0.22 -2.43 16 17 C -0.08 -1.69 9.40 22.27 0.21 -1.48 16 18 C -0.20 -4.75 5.45 -19.86 -0.11 -4.86 16 19 C 0.51 11.64 3.36 71.24 0.24 11.88 16 20 F -0.18 -3.86 17.30 44.97 0.78 -3.08 16 21 F -0.18 -4.32 16.46 44.97 0.74 -3.58 16 22 F -0.18 -4.19 16.46 44.97 0.74 -3.45 16 23 C -0.08 -1.80 9.40 22.27 0.21 -1.59 16 24 C -0.12 -2.88 9.70 22.27 0.22 -2.67 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.82 8.07 -2.39 -0.02 1.80 16 27 H 0.10 1.77 6.44 -2.39 -0.02 1.76 16 28 H 0.02 1.20 8.07 -2.38 -0.02 1.18 16 29 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 30 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 31 H 0.13 2.26 7.35 -2.39 -0.02 2.25 16 32 H 0.14 2.16 8.05 -2.39 -0.02 2.14 16 33 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 34 H 0.15 2.70 7.60 -2.91 -0.02 2.68 16 35 H 0.15 2.88 7.60 -2.91 -0.02 2.86 16 36 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -75.33 327.52 7.35 -67.99 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.11 Total: 4.87 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 4.15 Total: 3.08 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.15 Total: -82.64 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.05 Total: -29.70 kcal Atomic # 9 Polarization: -12.37 SS G_CDS: 2.26 Total: -10.11 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -75.33 7.35 -67.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051770745.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.572 kcal (2) G-P(sol) polarization free energy of solvation -75.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds