Wall clock time and date at job start Tue Mar 31 2020 04:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99650 * 2 1 4 4 C 1.50699 * 109.46950 * 269.99950 * 3 2 1 5 5 H 1.08004 * 120.00400 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00212 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00354 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99750 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47524 * 89.99741 * 8 6 4 10 10 H 1.48500 * 109.46841 * 209.99979 * 8 6 4 11 11 H 1.48501 * 109.47174 * 329.99789 * 8 6 4 12 12 C 1.34772 * 120.00359 * 180.02562 * 2 1 3 13 13 O 1.21549 * 120.00445 * 182.18269 * 12 2 1 14 14 C 1.47845 * 119.99896 * 2.17951 * 12 2 1 15 15 N 1.31272 * 119.97031 * 352.92641 * 14 12 2 16 16 C 1.33958 * 121.01090 * 179.97438 * 15 14 12 17 17 C 1.40744 * 120.03844 * 180.02562 * 16 15 14 18 18 C 1.36254 * 119.93773 * 179.97438 * 17 16 15 19 19 C 1.39041 * 120.71293 * 0.02562 * 18 17 16 20 20 C 1.37746 * 120.59435 * 359.97438 * 19 18 17 21 21 C 1.39182 * 119.86639 * 0.02562 * 20 19 18 22 22 N 1.37892 * 120.27199 * 180.27614 * 21 20 19 23 23 C 1.46502 * 120.48384 * 359.97429 * 22 21 20 24 24 C 1.35105 * 119.03210 * 180.29458 * 22 21 20 25 25 O 1.21725 * 120.45078 * 179.71168 * 24 22 21 26 26 H 1.09009 * 109.47122 * 263.77170 * 1 2 3 27 27 H 1.08997 * 109.47661 * 23.77001 * 1 2 3 28 28 H 1.09006 * 109.47212 * 143.77245 * 1 2 3 29 29 H 1.08993 * 109.47614 * 29.99958 * 3 2 1 30 30 H 1.08993 * 109.46911 * 150.00354 * 3 2 1 31 31 H 0.96993 * 120.00319 * 180.02562 * 7 6 4 32 32 H 1.07993 * 120.03113 * 0.02562 * 17 16 15 33 33 H 1.08003 * 119.64061 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.70379 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.06458 * 180.02562 * 20 19 18 36 36 H 1.09006 * 109.46427 * 89.99751 * 23 22 21 37 37 H 1.08993 * 109.47585 * 209.99771 * 23 22 21 38 38 H 1.08997 * 109.46726 * 330.00423 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2418 6 6 3.1267 2.8775 -1.6729 7 7 3.3463 3.2569 -2.9128 8 14 3.7348 3.9281 -0.2531 9 1 5.1082 3.5060 0.1225 10 1 3.7506 5.3549 -0.6644 11 1 2.8291 3.7587 0.9115 12 6 2.1389 -1.1671 -0.0005 13 8 3.3537 -1.1675 0.0396 14 6 1.4005 -2.4470 -0.0498 15 7 0.0914 -2.4530 0.0471 16 6 -0.5985 -3.6005 0.0045 17 6 -2.0019 -3.5831 0.1097 18 6 -2.7017 -4.7514 0.0656 19 6 -2.0444 -5.9677 -0.0823 20 6 -0.6718 -6.0145 -0.1877 21 6 0.0672 -4.8359 -0.1456 22 7 1.4412 -4.8726 -0.2560 23 6 2.1399 -6.1500 -0.4182 24 6 2.1342 -3.7139 -0.2059 25 8 3.3482 -3.7168 -0.2955 26 1 -0.3634 -0.1115 1.0217 27 1 -0.3634 0.9404 -0.4142 28 1 -0.3634 -0.8290 -0.6074 29 1 1.6084 2.0284 0.5138 30 1 3.1498 1.1385 0.5138 31 1 3.8237 4.0824 -3.0901 32 1 -2.5237 -2.6446 0.2245 33 1 -3.7785 -4.7324 0.1464 34 1 -2.6152 -6.8839 -0.1148 35 1 -0.1701 -6.9640 -0.3027 36 1 2.2333 -6.3808 -1.4794 37 1 3.1322 -6.0806 0.0273 38 1 1.5738 -6.9391 0.0767 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064552222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:11 Heat of formation + Delta-G solvation = -0.691876 kcal Electronic energy + Delta-G solvation = -24251.298700 eV Core-core repulsion = 20673.657732 eV Total energy + Delta-G solvation = -3577.640968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.94139 -40.66680 -39.86954 -37.60623 -37.02565 -36.60086 -34.67214 -31.93909 -31.18130 -30.24847 -29.37562 -27.67245 -26.58274 -24.74862 -24.32138 -22.98687 -21.41884 -20.24513 -19.37628 -19.16819 -18.38319 -17.63363 -17.41252 -17.18148 -16.48481 -16.29410 -16.04129 -15.88431 -15.60663 -15.19194 -14.89538 -14.69117 -14.51576 -14.33101 -13.90374 -13.81236 -13.53422 -13.34053 -13.07696 -12.90918 -12.68939 -12.51020 -12.37992 -12.07781 -12.00496 -11.76239 -11.70199 -11.31588 -10.84155 -10.28951 -9.74921 -9.49577 -9.15817 -8.35123 -6.41400 -1.27881 0.03801 0.68122 1.08313 1.32716 1.35850 1.38535 1.46741 2.02825 2.21058 2.31392 2.78878 2.83199 2.85131 2.99068 3.47176 3.67147 3.80723 4.03104 4.18063 4.24352 4.33935 4.44570 4.53038 4.63357 4.66884 4.70703 4.81159 4.83889 4.91555 5.10447 5.17549 5.24634 5.40196 5.41975 5.52380 5.58587 5.73100 6.18270 6.25245 6.48302 6.53826 6.58871 7.13017 7.26960 8.82196 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.023256 B = 0.004095 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.721137 B = 6835.575191 C = 7612.595201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.581 5.581 3 C 0.223 3.777 4 C -0.542 4.542 5 H 0.025 0.975 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.270 1.270 11 H -0.234 1.234 12 C 0.554 3.446 13 O -0.567 6.567 14 C 0.014 3.986 15 N -0.330 5.330 16 C -0.029 4.029 17 C -0.023 4.023 18 C -0.139 4.139 19 C -0.018 4.018 20 C -0.171 4.171 21 C 0.155 3.845 22 N -0.507 5.507 23 C 0.056 3.944 24 C 0.501 3.499 25 O -0.529 6.529 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.021 0.979 31 H 0.270 0.730 32 H 0.160 0.840 33 H 0.176 0.824 34 H 0.183 0.817 35 H 0.170 0.830 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.060 -24.083 9.435 32.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.312 5.312 3 C 0.101 3.899 4 C -0.580 4.580 5 H 0.043 0.957 6 C -0.186 4.186 7 N -0.584 5.584 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.195 1.195 11 H -0.157 1.157 12 C 0.340 3.660 13 O -0.444 6.444 14 C -0.159 4.159 15 N -0.048 5.048 16 C -0.146 4.146 17 C -0.042 4.042 18 C -0.158 4.158 19 C -0.037 4.037 20 C -0.192 4.192 21 C 0.050 3.950 22 N -0.225 5.225 23 C -0.083 4.083 24 C 0.292 3.708 25 O -0.404 6.404 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.178 0.822 33 H 0.193 0.807 34 H 0.201 0.799 35 H 0.187 0.813 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.089 -23.326 9.379 31.566 hybrid contribution 1.604 0.286 -0.296 1.656 sum -17.485 -23.040 9.084 30.316 Atomic orbital electron populations 1.22417 0.76748 1.03644 1.03194 1.47819 1.09098 1.05073 1.69169 1.19510 0.92952 0.81641 0.95805 1.21513 1.37400 1.07023 0.92073 0.95687 1.25878 0.94962 0.98804 0.98927 1.70047 1.42468 1.24542 1.21385 0.85674 0.79584 0.77729 0.79725 1.20308 1.19457 1.15712 1.17772 0.86375 0.83402 0.78430 1.90784 1.14801 1.86993 1.51868 1.23645 0.90085 0.93231 1.08952 1.68224 1.06126 1.29378 1.01023 1.19166 0.96443 0.86054 1.12890 1.21274 0.88349 1.01931 0.92648 1.21395 1.02720 0.90863 1.00859 1.21971 0.92642 1.00302 0.88752 1.21314 0.95369 0.95820 1.06679 1.19574 0.82091 0.97313 0.96038 1.45738 1.06236 1.09118 1.61400 1.22476 0.99037 0.81833 1.04930 1.19042 0.87776 0.84797 0.79181 1.90921 1.13901 1.86163 1.49396 0.90433 0.91423 0.88294 0.91930 0.96043 0.92098 0.82237 0.80665 0.79933 0.81275 0.89150 0.90265 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.88 9.33 127.77 1.19 4.07 16 2 N -0.58 -27.79 2.86 -854.59 -2.44 -30.23 16 3 C 0.22 11.88 4.22 85.63 0.36 12.24 16 4 C -0.54 -34.20 9.94 25.60 0.25 -33.94 16 5 H 0.02 1.76 8.06 -2.91 -0.02 1.74 16 6 C 0.01 0.77 5.47 84.66 0.46 1.23 16 7 N -0.94 -62.19 13.96 21.45 0.30 -61.89 16 8 Si 0.95 46.44 27.47 68.60 1.88 48.32 16 9 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.23 -10.20 6.54 99.48 0.65 -9.55 16 12 C 0.55 28.32 7.66 86.79 0.66 28.98 16 13 O -0.57 -34.54 15.03 15.91 0.24 -34.30 16 14 C 0.01 0.56 6.83 44.14 0.30 0.86 16 15 N -0.33 -10.38 6.03 -172.99 -1.04 -11.43 16 16 C -0.03 -0.67 6.58 40.14 0.26 -0.41 16 17 C -0.02 -0.30 9.96 22.42 0.22 -0.08 16 18 C -0.14 -0.77 9.96 22.00 0.22 -0.55 16 19 C -0.02 -0.07 10.03 22.35 0.22 0.16 16 20 C -0.17 -1.57 9.21 22.38 0.21 -1.37 16 21 C 0.15 3.14 6.53 39.13 0.26 3.39 16 22 N -0.51 -13.37 3.06 -657.27 -2.01 -15.38 16 23 C 0.06 0.94 9.95 127.77 1.27 2.21 16 24 C 0.50 19.83 7.63 86.55 0.66 20.49 16 25 O -0.53 -25.63 15.16 15.36 0.23 -25.40 16 26 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 27 H 0.07 2.35 8.02 -2.39 -0.02 2.33 16 28 H 0.10 3.30 5.27 -2.56 -0.01 3.28 16 29 H 0.06 2.97 7.13 -2.39 -0.02 2.95 16 30 H 0.02 1.22 6.82 -2.39 -0.02 1.21 16 31 H 0.27 16.40 8.31 -92.71 -0.77 15.63 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.18 -0.23 8.06 -2.91 -0.02 -0.25 16 34 H 0.18 -0.82 8.06 -2.91 -0.02 -0.84 16 35 H 0.17 0.49 6.17 -2.91 -0.02 0.47 16 36 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.08 1.65 7.47 -2.39 -0.02 1.63 16 38 H 0.13 0.90 6.22 -2.39 -0.01 0.88 16 Total: -1.00 -97.88 321.52 4.77 -93.12 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: 1.04 Total: -0.10 kcal Atomic # 6 Polarization: 30.73 SS G_CDS: 6.56 Total: 37.29 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -5.19 Total: -118.93 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: 0.47 Total: -59.70 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.88 Total: 48.32 kcal Total: -97.88 4.77 -93.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064552222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.427 kcal (2) G-P(sol) polarization free energy of solvation -97.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds