Wall clock time and date at job start Tue Mar 31 2020 04:18:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86797 * 120.00084 * 2 1
4 4 H 1.48496 * 109.46908 * 180.02562 * 3 2 1
5 5 H 1.48493 * 109.47150 * 300.00432 * 3 2 1
6 6 H 1.48507 * 109.46886 * 60.00301 * 3 2 1
7 7 C 1.37874 * 119.99475 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99866 * 179.97438 * 7 2 1
9 9 C 1.50693 * 120.00481 * 0.26659 * 7 2 1
10 10 C 1.53003 * 109.47525 * 175.28475 * 9 7 2
11 11 H 1.09001 * 109.46977 * 305.72534 * 10 9 7
12 12 N 1.46497 * 109.47476 * 185.72194 * 10 9 7
13 13 C 1.34780 * 119.99890 * 86.59248 * 12 10 9
14 14 O 1.21575 * 119.99853 * 355.09459 * 13 12 10
15 15 N 1.34780 * 119.99579 * 175.09618 * 13 12 10
16 16 C 1.38631 * 119.99642 * 180.02562 * 15 13 12
17 17 N 1.30955 * 125.70011 * 359.69161 * 16 15 13
18 18 C 1.34659 * 108.62243 * 179.83875 * 17 16 15
19 19 C 1.34162 * 107.77255 * 0.42380 * 18 17 16
20 20 O 1.34191 * 125.70157 * 180.02562 * 16 15 13
21 21 C 1.50701 * 109.46987 * 65.72290 * 10 9 7
22 22 C 1.38235 * 120.00031 * 79.72381 * 21 10 9
23 23 C 1.38230 * 119.99717 * 179.78795 * 22 21 10
24 24 C 1.38234 * 120.00410 * 0.44751 * 23 22 21
25 25 C 1.38242 * 119.99594 * 359.80755 * 24 23 22
26 26 C 1.38230 * 119.99896 * 359.97438 * 25 24 23
27 27 H 0.97003 * 119.99869 * 359.97438 * 1 2 3
28 28 H 1.09000 * 109.47475 * 295.29214 * 9 7 2
29 29 H 1.09009 * 109.47110 * 55.28647 * 9 7 2
30 30 H 0.97004 * 120.00337 * 266.59610 * 12 10 9
31 31 H 0.96994 * 120.00217 * 0.02562 * 15 13 12
32 32 H 1.07999 * 126.11174 * 180.15066 * 18 17 16
33 33 H 1.07999 * 126.36779 * 179.70541 * 19 18 17
34 34 H 1.07994 * 119.99818 * 0.02562 * 22 21 10
35 35 H 1.08000 * 119.99961 * 180.27715 * 23 22 21
36 36 H 1.08001 * 120.00656 * 179.83189 * 24 23 22
37 37 H 1.07997 * 119.99546 * 179.97438 * 25 24 23
38 38 H 1.08003 * 119.99539 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3463 -0.0006
5 1 1.8904 2.3964 -1.2124
6 1 1.8905 2.3964 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0844 -1.1942 -0.0010
9 6 1.2510 -2.4991 -0.0072
10 6 2.2414 -3.6594 -0.1250
11 1 2.8761 -3.5080 -0.9981
12 7 1.5049 -4.9175 -0.2689
13 6 1.1164 -5.3351 -1.4901
14 8 1.2980 -4.6264 -2.4610
15 7 0.5268 -6.5384 -1.6347
16 6 0.1277 -6.9682 -2.8908
17 7 0.2631 -6.2967 -4.0069
18 6 -0.2364 -7.0351 -5.0163
19 6 -0.6958 -8.1830 -4.4955
20 8 -0.4676 -8.1391 -3.1653
21 6 3.0971 -3.7171 1.1142
22 6 2.6031 -4.2944 2.2690
23 6 3.3896 -4.3513 3.4043
24 6 4.6668 -3.8227 3.3876
25 6 5.1589 -3.2407 2.2343
26 6 4.3740 -3.1878 1.0977
27 1 -0.4850 0.8401 0.0004
28 1 0.6853 -2.5969 0.9194
29 1 0.5659 -2.5188 -0.8548
30 1 1.2967 -5.4501 0.5147
31 1 0.3816 -7.1037 -0.8599
32 1 -0.2661 -6.7517 -6.0580
33 1 -1.1624 -8.9912 -5.0390
34 1 1.6040 -4.7043 2.2830
35 1 3.0053 -4.8063 4.3052
36 1 5.2803 -3.8647 4.2754
37 1 6.1565 -2.8273 2.2214
38 1 4.7583 -2.7328 0.1967
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000159787726.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:18:10
Heat of formation + Delta-G solvation = 43.217814 kcal
Electronic energy + Delta-G solvation = -23641.386663 eV
Core-core repulsion = 20065.649762 eV
Total energy + Delta-G solvation = -3575.736901 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 301.121 amu
Computer time = 1.61 seconds
Orbital eigenvalues (eV)
-43.21652 -40.07643 -38.79863 -35.62492 -34.55782 -34.52530 -32.81255 -31.16631
-30.48208 -29.08106 -28.46787 -25.06622 -23.18083 -22.51170 -22.35579 -22.01721
-20.63162 -19.76522 -18.70869 -18.26430 -16.86094 -16.73860 -16.17430 -16.03661
-14.99109 -14.90447 -14.80051 -14.44950 -14.41847 -13.95258 -13.62700 -13.11961
-12.99741 -12.86553 -12.53785 -12.16247 -11.61549 -11.46863 -11.14938 -10.85866
-10.78599 -10.67312 -10.60647 -10.36796 -10.07514 -9.90074 -9.76527 -9.12573
-8.66111 -8.50728 -8.32996 -8.24361 -8.05504 -5.97109 -3.98631 1.51201
1.62089 1.80136 1.86304 2.81267 3.34777 3.36964 3.42429 3.45755
3.56825 4.04903 4.26423 4.51099 4.90633 5.00666 5.19845 5.23731
5.27532 5.33885 5.41028 5.48535 5.77589 5.87082 5.94830 6.07181
6.12282 6.33549 6.41498 6.48690 6.64339 6.73343 6.74388 6.82870
6.87535 7.11545 7.39486 7.61445 7.71664 7.85082 8.01047 8.19962
8.37384 8.75928 9.06071 9.64520 11.14701
Molecular weight = 301.12amu
Principal moments of inertia in cm(-1)
A = 0.012313 B = 0.004477 C = 0.003511
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2273.465884 B = 6253.198071 C = 7972.011693
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.893 5.893
2 C 0.060 3.940
3 Si 0.890 3.110
4 H -0.272 1.272
5 H -0.284 1.284
6 H -0.285 1.285
7 C -0.512 4.512
8 H 0.060 0.940
9 C 0.023 3.977
10 C 0.200 3.800
11 H 0.092 0.908
12 N -0.726 5.726
13 C 0.703 3.297
14 O -0.512 6.512
15 N -0.633 5.633
16 C 0.440 3.560
17 N -0.463 5.463
18 C -0.019 4.019
19 C -0.106 4.106
20 O -0.223 6.223
21 C -0.050 4.050
22 C -0.119 4.119
23 C -0.122 4.122
24 C -0.134 4.134
25 C -0.120 4.120
26 C -0.097 4.097
27 H 0.259 0.741
28 H 0.016 0.984
29 H 0.034 0.966
30 H 0.390 0.610
31 H 0.416 0.584
32 H 0.185 0.815
33 H 0.217 0.783
34 H 0.115 0.885
35 H 0.115 0.885
36 H 0.114 0.886
37 H 0.116 0.884
38 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.654 -17.474 0.783 17.692
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.141 4.141
3 Si 0.718 3.282
4 H -0.196 1.196
5 H -0.210 1.210
6 H -0.211 1.211
7 C -0.551 4.551
8 H 0.078 0.922
9 C -0.015 4.015
10 C 0.097 3.903
11 H 0.110 0.890
12 N -0.381 5.381
13 C 0.402 3.598
14 O -0.380 6.380
15 N -0.293 5.293
16 C 0.141 3.859
17 N -0.200 5.200
18 C -0.158 4.158
19 C -0.176 4.176
20 O -0.110 6.110
21 C -0.050 4.050
22 C -0.137 4.137
23 C -0.140 4.140
24 C -0.152 4.152
25 C -0.138 4.138
26 C -0.115 4.115
27 H 0.069 0.931
28 H 0.034 0.966
29 H 0.053 0.947
30 H 0.224 0.776
31 H 0.252 0.748
32 H 0.202 0.798
33 H 0.233 0.767
34 H 0.133 0.867
35 H 0.133 0.867
36 H 0.132 0.868
37 H 0.135 0.865
38 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 3.000 -16.044 -0.096 16.322
hybrid contribution -0.323 -0.275 0.878 0.975
sum 2.677 -16.319 0.782 16.555
Atomic orbital electron populations
1.69979 1.06062 1.26461 1.50718 1.24950 0.94770 0.99152 0.95250
0.86555 0.80183 0.83926 0.77492 1.19633 1.21017 1.21143 1.21091
0.93085 0.90302 1.50624 0.92185 1.19469 0.93698 0.90357 0.98003
1.20323 0.93124 0.82029 0.94829 0.89019 1.45399 1.61010 1.26086
1.05614 1.15598 0.79266 0.79768 0.85160 1.91131 1.56765 1.52637
1.37428 1.41529 1.63134 1.20365 1.04260 1.21260 0.94877 0.81393
0.88324 1.71334 1.23267 1.29140 0.96210 1.23446 1.00388 0.91625
1.00308 1.24658 1.10394 1.03518 0.79055 1.84378 1.62503 1.36647
1.27479 1.19915 0.93867 0.96059 0.95203 1.20820 0.99142 1.00880
0.92886 1.20974 0.94581 1.00656 0.97768 1.20996 0.96171 1.00168
0.97861 1.21053 0.99682 0.99823 0.93286 1.20992 0.93407 0.98392
0.98748 0.93093 0.96563 0.94729 0.77588 0.74773 0.79804 0.76653
0.86719 0.86697 0.86842 0.86548 0.85881
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16
2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16
3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16
4 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16
5 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16
6 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16
7 C -0.51 -14.19 8.64 -34.44 -0.30 -14.49 16
8 H 0.06 1.59 6.44 -52.49 -0.34 1.26 16
9 C 0.02 0.58 4.73 -27.88 -0.13 0.45 16
10 C 0.20 4.02 2.19 -69.08 -0.15 3.87 16
11 H 0.09 2.02 7.46 -51.93 -0.39 1.63 16
12 N -0.73 -11.96 5.02 -59.81 -0.30 -12.26 16
13 C 0.70 12.80 8.50 -86.91 -0.74 12.07 16
14 O -0.51 -12.00 14.70 5.30 0.08 -11.92 16
15 N -0.63 -8.92 5.39 -17.47 -0.09 -9.02 16
16 C 0.44 6.86 8.98 -86.62 -0.78 6.08 16
17 N -0.46 -8.27 9.46 -14.36 -0.14 -8.41 16
18 C -0.02 -0.24 11.88 -17.75 -0.21 -0.45 16
19 C -0.11 -1.08 12.17 29.30 0.36 -0.73 16
20 O -0.22 -2.83 10.80 3.96 0.04 -2.78 16
21 C -0.05 -0.89 4.49 -104.62 -0.47 -1.36 16
22 C -0.12 -1.84 9.06 -39.59 -0.36 -2.20 16
23 C -0.12 -1.69 10.05 -39.59 -0.40 -2.08 16
24 C -0.13 -1.84 10.05 -39.58 -0.40 -2.23 16
25 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16
26 C -0.10 -1.67 8.63 -39.59 -0.34 -2.01 16
27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
28 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16
29 H 0.03 1.01 8.14 -51.92 -0.42 0.59 16
30 H 0.39 4.91 6.91 -40.82 -0.28 4.63 16
31 H 0.42 3.91 8.84 -40.82 -0.36 3.55 16
32 H 0.18 1.77 8.06 -52.49 -0.42 1.34 16
33 H 0.22 1.13 8.06 -52.49 -0.42 0.71 16
34 H 0.11 1.55 6.91 -52.49 -0.36 1.19 16
35 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16
36 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16
37 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16
38 H 0.12 2.10 7.83 -52.48 -0.41 1.69 16
LS Contribution 333.63 15.07 5.03 5.03
Total: -1.00 -36.97 333.63 -8.31 -45.29
By element:
Atomic # 1 Polarization: 11.41 SS G_CDS: -4.24 Total: 7.17 kcal
Atomic # 6 Polarization: 0.77 SS G_CDS: -4.41 Total: -3.64 kcal
Atomic # 7 Polarization: -56.27 SS G_CDS: 0.21 Total: -56.07 kcal
Atomic # 8 Polarization: -14.83 SS G_CDS: 0.12 Total: -14.71 kcal
Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -36.97 -8.31 -45.29 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000159787726.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.506 kcal
(2) G-P(sol) polarization free energy of solvation -36.975 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.532 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.289 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.218 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.61 seconds