Wall clock time and date at job start Tue Mar 31 2020 04:18:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86797 * 120.00084 * 2 1
4 4 H 1.48496 * 109.46908 * 180.02562 * 3 2 1
5 5 H 1.48493 * 109.47150 * 300.00432 * 3 2 1
6 6 H 1.48507 * 109.46886 * 60.00301 * 3 2 1
7 7 C 1.37874 * 119.99475 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99866 * 179.97438 * 7 2 1
9 9 C 1.50693 * 120.00481 * 0.26659 * 7 2 1
10 10 C 1.53003 * 109.47525 * 175.28475 * 9 7 2
11 11 H 1.09001 * 109.46977 * 305.72534 * 10 9 7
12 12 N 1.46497 * 109.47476 * 185.72194 * 10 9 7
13 13 C 1.34780 * 119.99890 * 86.59248 * 12 10 9
14 14 O 1.21575 * 119.99853 * 355.09459 * 13 12 10
15 15 N 1.34780 * 119.99579 * 175.09618 * 13 12 10
16 16 C 1.38631 * 119.99642 * 180.02562 * 15 13 12
17 17 N 1.30955 * 125.70011 * 359.69161 * 16 15 13
18 18 C 1.34659 * 108.62243 * 179.83875 * 17 16 15
19 19 C 1.34162 * 107.77255 * 0.42380 * 18 17 16
20 20 O 1.34191 * 125.70157 * 180.02562 * 16 15 13
21 21 C 1.50701 * 109.46987 * 65.72290 * 10 9 7
22 22 C 1.38235 * 120.00031 * 79.72381 * 21 10 9
23 23 C 1.38230 * 119.99717 * 179.78795 * 22 21 10
24 24 C 1.38234 * 120.00410 * 0.44751 * 23 22 21
25 25 C 1.38242 * 119.99594 * 359.80755 * 24 23 22
26 26 C 1.38230 * 119.99896 * 359.97438 * 25 24 23
27 27 H 0.97003 * 119.99869 * 359.97438 * 1 2 3
28 28 H 1.09000 * 109.47475 * 295.29214 * 9 7 2
29 29 H 1.09009 * 109.47110 * 55.28647 * 9 7 2
30 30 H 0.97004 * 120.00337 * 266.59610 * 12 10 9
31 31 H 0.96994 * 120.00217 * 0.02562 * 15 13 12
32 32 H 1.07999 * 126.11174 * 180.15066 * 18 17 16
33 33 H 1.07999 * 126.36779 * 179.70541 * 19 18 17
34 34 H 1.07994 * 119.99818 * 0.02562 * 22 21 10
35 35 H 1.08000 * 119.99961 * 180.27715 * 23 22 21
36 36 H 1.08001 * 120.00656 * 179.83189 * 24 23 22
37 37 H 1.07997 * 119.99546 * 179.97438 * 25 24 23
38 38 H 1.08003 * 119.99539 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3463 -0.0006
5 1 1.8904 2.3964 -1.2124
6 1 1.8905 2.3964 1.2126
7 6 2.0045 -1.1941 -0.0005
8 1 3.0844 -1.1942 -0.0010
9 6 1.2510 -2.4991 -0.0072
10 6 2.2414 -3.6594 -0.1250
11 1 2.8761 -3.5080 -0.9981
12 7 1.5049 -4.9175 -0.2689
13 6 1.1164 -5.3351 -1.4901
14 8 1.2980 -4.6264 -2.4610
15 7 0.5268 -6.5384 -1.6347
16 6 0.1277 -6.9682 -2.8908
17 7 0.2631 -6.2967 -4.0069
18 6 -0.2364 -7.0351 -5.0163
19 6 -0.6958 -8.1830 -4.4955
20 8 -0.4676 -8.1391 -3.1653
21 6 3.0971 -3.7171 1.1142
22 6 2.6031 -4.2944 2.2690
23 6 3.3896 -4.3513 3.4043
24 6 4.6668 -3.8227 3.3876
25 6 5.1589 -3.2407 2.2343
26 6 4.3740 -3.1878 1.0977
27 1 -0.4850 0.8401 0.0004
28 1 0.6853 -2.5969 0.9194
29 1 0.5659 -2.5188 -0.8548
30 1 1.2967 -5.4501 0.5147
31 1 0.3816 -7.1037 -0.8599
32 1 -0.2661 -6.7517 -6.0580
33 1 -1.1624 -8.9912 -5.0390
34 1 1.6040 -4.7043 2.2830
35 1 3.0053 -4.8063 4.3052
36 1 5.2803 -3.8647 4.2754
37 1 6.1565 -2.8273 2.2214
38 1 4.7583 -2.7328 0.1967
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000159787726.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:18:10
Heat of formation + Delta-G solvation = 15.202923 kcal
Electronic energy + Delta-G solvation = -23642.601480 eV
Core-core repulsion = 20065.649762 eV
Total energy + Delta-G solvation = -3576.951718 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 301.121 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-44.26536 -41.51312 -40.05656 -37.04335 -36.03378 -35.64014 -34.85195 -32.63573
-31.65277 -30.39615 -29.96993 -26.82961 -24.55659 -23.90304 -23.60743 -23.24520
-21.91737 -21.28121 -19.94617 -19.50655 -18.59090 -17.94642 -17.47830 -17.19729
-16.68176 -16.40100 -16.12050 -16.02500 -15.65246 -15.19211 -15.02892 -14.57840
-14.21293 -14.13139 -14.05762 -13.88150 -13.13082 -12.97579 -12.78918 -12.56919
-12.49516 -12.03450 -11.87217 -11.82825 -11.77509 -11.60859 -11.26309 -11.08089
-10.55656 -10.16816 -9.67722 -9.46389 -9.25868 -8.18070 -6.26448 0.41264
0.48564 0.62746 0.67099 1.38278 1.40199 1.52233 1.68118 2.18430
2.28270 2.43683 2.90678 3.04661 3.17989 3.83712 3.87880 4.05708
4.08338 4.27222 4.38005 4.42743 4.50981 4.74805 4.78112 4.84603
4.86371 5.13543 5.15586 5.19440 5.28118 5.33711 5.47305 5.51726
5.61977 5.71218 5.73483 5.77268 5.91969 6.22714 6.24826 6.59152
6.87126 7.05848 7.37359 7.41296 8.94885
Molecular weight = 301.12amu
Principal moments of inertia in cm(-1)
A = 0.012313 B = 0.004477 C = 0.003511
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2273.465884 B = 6253.198071 C = 7972.011693
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C 0.001 3.999
3 Si 0.958 3.042
4 H -0.258 1.258
5 H -0.284 1.284
6 H -0.276 1.276
7 C -0.522 4.522
8 H 0.068 0.932
9 C 0.036 3.964
10 C 0.219 3.781
11 H 0.063 0.937
12 N -0.710 5.710
13 C 0.705 3.295
14 O -0.571 6.571
15 N -0.614 5.614
16 C 0.414 3.586
17 N -0.519 5.519
18 C -0.056 4.056
19 C -0.066 4.066
20 O -0.215 6.215
21 C -0.074 4.074
22 C -0.126 4.126
23 C -0.118 4.118
24 C -0.127 4.127
25 C -0.124 4.124
26 C -0.121 4.121
27 H 0.261 0.739
28 H 0.002 0.998
29 H -0.017 1.017
30 H 0.411 0.589
31 H 0.438 0.562
32 H 0.207 0.793
33 H 0.274 0.726
34 H 0.129 0.871
35 H 0.150 0.850
36 H 0.149 0.851
37 H 0.140 0.860
38 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.568 -19.292 2.584 19.789
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.196 4.196
3 Si 0.783 3.217
4 H -0.182 1.182
5 H -0.210 1.210
6 H -0.202 1.202
7 C -0.560 4.560
8 H 0.086 0.914
9 C -0.002 4.002
10 C 0.114 3.886
11 H 0.081 0.919
12 N -0.367 5.367
13 C 0.404 3.596
14 O -0.444 6.444
15 N -0.276 5.276
16 C 0.115 3.885
17 N -0.257 5.257
18 C -0.193 4.193
19 C -0.136 4.136
20 O -0.101 6.101
21 C -0.075 4.075
22 C -0.144 4.144
23 C -0.136 4.136
24 C -0.145 4.145
25 C -0.142 4.142
26 C -0.140 4.140
27 H 0.069 0.931
28 H 0.020 0.980
29 H 0.002 0.998
30 H 0.249 0.751
31 H 0.279 0.721
32 H 0.223 0.777
33 H 0.289 0.711
34 H 0.147 0.853
35 H 0.168 0.832
36 H 0.167 0.833
37 H 0.158 0.842
38 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 3.901 -17.950 1.752 18.453
hybrid contribution -0.650 0.152 0.263 0.717
sum 3.252 -17.798 2.016 18.205
Atomic orbital electron populations
1.70123 1.07827 1.27407 1.52222 1.25886 0.95623 1.03122 0.95012
0.85492 0.79451 0.79204 0.77549 1.18155 1.21049 1.20200 1.21516
0.93671 0.91344 1.49499 0.91436 1.19216 0.93739 0.92465 0.94799
1.19681 0.91802 0.81586 0.95500 0.91854 1.45030 1.60300 1.25186
1.06140 1.15709 0.78891 0.80352 0.84663 1.91088 1.59139 1.54804
1.39342 1.40966 1.62250 1.19299 1.05069 1.21177 0.96570 0.82529
0.88176 1.71217 1.24571 1.31652 0.98229 1.23920 1.02014 0.92620
1.00767 1.25765 1.06683 1.03342 0.77809 1.84415 1.61774 1.35111
1.28763 1.19724 0.94189 0.98767 0.94816 1.21058 1.00152 1.00567
0.92671 1.21397 0.94389 0.99707 0.98109 1.21468 0.96384 0.98231
0.98433 1.21355 1.00435 0.99599 0.92763 1.21079 0.93895 0.99391
0.99615 0.93051 0.98019 0.99831 0.75075 0.72114 0.77656 0.71094
0.85296 0.83233 0.83282 0.84206 0.87184
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.95 13.29 21.45 0.28 -58.66 16
2 C 0.00 0.05 5.46 84.65 0.46 0.51 16
3 Si 0.96 45.84 29.54 68.60 2.03 47.87 16
4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16
5 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16
6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16
7 C -0.52 -30.07 8.64 25.60 0.22 -29.85 16
8 H 0.07 3.70 6.44 -2.91 -0.02 3.68 16
9 C 0.04 1.95 4.73 29.85 0.14 2.09 16
10 C 0.22 9.32 2.19 44.25 0.10 9.42 16
11 H 0.06 3.04 7.46 -2.39 -0.02 3.02 16
12 N -0.71 -24.46 5.02 -461.41 -2.32 -26.78 16
13 C 0.70 27.13 8.50 179.05 1.52 28.65 16
14 O -0.57 -28.90 14.70 -3.95 -0.06 -28.96 16
15 N -0.61 -17.71 5.39 -437.65 -2.36 -20.07 16
16 C 0.41 13.06 8.98 178.95 1.61 14.67 16
17 N -0.52 -19.22 9.46 -313.66 -2.97 -22.19 16
18 C -0.06 -1.41 11.88 83.33 0.99 -0.42 16
19 C -0.07 -1.18 12.17 66.89 0.81 -0.37 16
20 O -0.21 -5.08 10.80 -8.75 -0.09 -5.17 16
21 C -0.07 -2.68 4.49 -19.87 -0.09 -2.77 16
22 C -0.13 -3.72 9.06 22.27 0.20 -3.52 16
23 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16
24 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16
25 C -0.12 -3.41 10.05 22.27 0.22 -3.18 16
26 C -0.12 -4.19 8.63 22.27 0.19 -3.99 16
27 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16
28 H 0.00 0.08 8.13 -2.39 -0.02 0.07 16
29 H -0.02 -1.07 8.14 -2.38 -0.02 -1.08 16
30 H 0.41 10.37 6.91 -92.71 -0.64 9.73 16
31 H 0.44 7.99 8.84 -92.71 -0.82 7.17 16
32 H 0.21 3.85 8.06 -2.91 -0.02 3.82 16
33 H 0.27 1.44 8.06 -2.91 -0.02 1.42 16
34 H 0.13 3.29 6.91 -2.91 -0.02 3.27 16
35 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16
36 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16
37 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16
38 H 0.11 3.94 7.83 -2.91 -0.02 3.92 16
Total: -1.00 -87.12 333.63 1.00 -86.12
By element:
Atomic # 1 Polarization: 22.36 SS G_CDS: -0.35 Total: 22.02 kcal
Atomic # 6 Polarization: -1.01 SS G_CDS: 6.83 Total: 5.82 kcal
Atomic # 7 Polarization: -120.34 SS G_CDS: -7.36 Total: -127.70 kcal
Atomic # 8 Polarization: -33.98 SS G_CDS: -0.15 Total: -34.13 kcal
Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal
Total: -87.12 1.00 -86.12 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000159787726.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.324 kcal
(2) G-P(sol) polarization free energy of solvation -87.118 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.206 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.121 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.203 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds