Wall clock time and date at job start Tue Mar 31 2020 03:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46874 * 251.02398 * 3 2 1 5 5 C 1.36938 * 119.99746 * 273.37575 * 4 3 2 6 6 H 1.08005 * 119.99531 * 186.54219 * 5 4 3 7 7 C 1.38806 * 120.00523 * 6.54474 * 5 4 3 8 8 N 1.31622 * 119.99788 * 25.63803 * 7 5 4 9 9 Si 1.86800 * 120.00336 * 205.63577 * 7 5 4 10 10 H 1.48497 * 109.47066 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46820 * 120.00022 * 9 7 5 12 12 H 1.48495 * 109.47341 * 240.00023 * 9 7 5 13 13 S 1.65599 * 120.00021 * 93.38072 * 4 3 2 14 14 O 1.42096 * 104.28034 * 153.92720 * 13 4 3 15 15 O 1.42100 * 104.27531 * 26.06555 * 13 4 3 16 16 C 1.81404 * 104.44657 * 269.99758 * 13 4 3 17 17 C 1.52996 * 109.46950 * 179.97438 * 16 13 4 18 18 C 1.53001 * 109.47275 * 180.02562 * 17 16 13 19 19 C 1.53179 * 109.54715 * 65.43774 * 18 17 16 20 20 C 1.53089 * 109.16178 * 176.84882 * 19 18 17 21 21 O 1.42906 * 109.41762 * 302.39530 * 20 19 18 22 22 C 1.42901 * 114.09791 * 61.16097 * 21 20 19 23 23 C 1.53088 * 109.41218 * 298.84148 * 22 21 20 24 24 H 4.40643 * 5.51436 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.47155 * 131.03086 * 3 2 1 26 26 H 1.08997 * 109.47378 * 11.02260 * 3 2 1 27 27 H 0.97003 * 120.00227 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47026 * 60.00441 * 16 13 4 29 29 H 1.08996 * 109.46941 * 299.99895 * 16 13 4 30 30 H 1.08999 * 109.47681 * 60.00006 * 17 16 13 31 31 H 1.09005 * 109.47189 * 299.99975 * 17 16 13 32 32 H 1.09011 * 109.60825 * 305.21825 * 18 17 16 33 33 H 1.08997 * 109.52086 * 296.75889 * 19 18 17 34 34 H 1.09000 * 109.51881 * 56.94643 * 19 18 17 35 35 H 1.08999 * 109.47735 * 182.41147 * 20 19 18 36 36 H 1.08999 * 109.47813 * 62.38235 * 20 19 18 37 37 H 1.08995 * 109.48230 * 178.85978 * 22 21 20 38 38 H 1.09003 * 109.49412 * 58.82703 * 22 21 20 39 39 H 1.09005 * 109.52637 * 297.70111 * 23 22 21 40 40 H 1.09005 * 109.52679 * 177.51730 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4500 1.3062 5 6 3.2958 1.7871 1.5537 6 1 3.7540 2.1141 2.4754 7 6 2.8709 2.7222 0.6200 8 7 1.9042 2.4204 -0.2207 9 14 3.6709 4.4091 0.5567 10 1 4.7244 4.4967 1.5995 11 1 4.2807 4.6177 -0.7812 12 1 2.6439 5.4535 0.8008 13 16 3.4903 -0.6589 2.4833 14 8 4.4575 -0.0088 3.2962 15 8 3.8129 -1.8415 1.7645 16 6 1.9342 -0.8706 3.3915 17 6 2.1358 -1.8848 4.5191 18 6 0.8233 -2.0638 5.2847 19 6 -0.2240 -2.6991 4.3649 20 6 -1.5080 -2.9465 5.1609 21 8 -1.2176 -3.7819 6.2834 22 6 -0.2799 -3.2186 7.2029 23 6 1.0535 -2.9821 6.4889 24 1 -1.0501 0.0001 -0.0002 25 1 3.0090 0.6755 -0.7752 26 1 3.0098 -1.0078 -0.1965 27 1 1.6075 3.0737 -0.8735 28 1 1.1630 -1.2325 2.7114 29 1 1.6268 0.0862 3.8134 30 1 2.9072 -1.5235 5.1993 31 1 2.4431 -2.8415 4.0967 32 1 0.4655 -1.0935 5.6293 33 1 -0.4346 -2.0263 3.5336 34 1 0.1549 -3.6463 3.9812 35 1 -2.2425 -3.4376 4.5226 36 1 -1.9083 -1.9947 5.5101 37 1 -0.1295 -3.9057 8.0355 38 1 -0.6640 -2.2703 7.5790 39 1 1.4583 -3.9351 6.1480 40 1 1.7566 -2.5119 7.1765 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292443689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:38 Heat of formation + Delta-G solvation = -63.623961 kcal Electronic energy + Delta-G solvation = -23327.499909 eV Core-core repulsion = 19850.281201 eV Total energy + Delta-G solvation = -3477.218708 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.44636 -36.35315 -35.78786 -35.47792 -34.59018 -32.06490 -31.24956 -31.16790 -30.55239 -26.61340 -25.38059 -23.88499 -23.55830 -21.68755 -19.97823 -18.49057 -17.90838 -16.94189 -16.52945 -16.15300 -16.06372 -15.24704 -15.15401 -14.75994 -14.68229 -14.41228 -13.84575 -13.60649 -13.36147 -13.08407 -12.47339 -12.41404 -12.27925 -11.87865 -11.87035 -11.36791 -11.29957 -11.20951 -11.03321 -10.83421 -10.80184 -10.73648 -10.47312 -10.30343 -10.28908 -10.25937 -9.84912 -9.65879 -9.34652 -9.23036 -8.86241 -8.30010 -6.61014 -3.95963 1.50524 3.05655 3.14535 3.22313 3.62187 3.81935 3.98628 4.09948 4.39102 4.63144 4.68605 4.73855 4.86681 4.98311 5.09151 5.17390 5.27412 5.36551 5.40359 5.51788 5.56110 5.63424 5.65922 5.71118 5.86568 5.90239 6.04761 6.08400 6.14846 6.25072 6.32519 6.46327 6.61328 6.72177 6.94534 7.11869 7.12538 7.25128 8.15723 8.56847 8.83147 8.98985 10.31409 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.004436 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.752963 B = 6310.658919 C = 6636.376890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.109 4.109 3 C 0.233 3.767 4 N -0.802 5.802 5 C -0.248 4.248 6 H 0.122 0.878 7 C 0.028 3.972 8 N -0.822 5.822 9 Si 0.927 3.073 10 H -0.261 1.261 11 H -0.275 1.275 12 H -0.280 1.280 13 S 2.484 3.516 14 O -0.982 6.982 15 O -0.998 6.998 16 C -0.663 4.663 17 C -0.096 4.096 18 C -0.082 4.082 19 C -0.153 4.153 20 C 0.061 3.939 21 O -0.387 6.387 22 C 0.062 3.938 23 C -0.155 4.155 24 H 0.197 0.803 25 H 0.114 0.886 26 H 0.083 0.917 27 H 0.275 0.725 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.237 -4.893 6.299 9.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.112 4.112 3 C 0.108 3.892 4 N -0.624 5.624 5 C -0.394 4.394 6 H 0.139 0.861 7 C -0.184 4.184 8 N -0.461 5.461 9 Si 0.752 3.248 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.206 1.206 13 S 2.583 3.417 14 O -0.972 6.972 15 O -0.987 6.987 16 C -0.782 4.782 17 C -0.135 4.135 18 C -0.101 4.101 19 C -0.191 4.191 20 C -0.016 4.016 21 O -0.306 6.306 22 C -0.015 4.015 23 C -0.193 4.193 24 H 0.214 0.786 25 H 0.132 0.868 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.572 -5.672 6.472 9.745 hybrid contribution -0.883 1.409 0.010 1.663 sum -5.456 -4.262 6.481 9.484 Atomic orbital electron populations 1.24217 0.95295 1.07356 1.02157 1.23480 0.94611 0.94586 0.98497 1.18444 0.83727 0.99490 0.87571 1.54953 1.72264 1.17053 1.18137 1.20090 1.31532 0.80617 1.07195 0.86054 1.25549 0.95238 1.00262 0.97358 1.70237 1.21279 1.35795 1.18786 0.85845 0.79529 0.80377 0.79066 1.18519 1.20087 1.20581 1.13294 0.80383 0.73973 0.74034 1.93367 1.59398 1.74107 1.70302 1.93351 1.84925 1.49897 1.70554 1.31174 1.30237 1.05584 1.11215 1.21221 0.97478 0.98432 0.96372 1.21174 0.95720 0.98518 0.94737 1.22296 0.95764 1.01993 0.99055 1.22602 0.96665 0.94677 0.87618 1.87897 1.62507 1.45063 1.35113 1.22560 0.88654 0.98581 0.91726 1.22309 0.98049 1.00896 0.98041 0.78621 0.86810 0.89907 0.91448 0.87222 0.87068 0.91390 0.91520 0.90992 0.90202 0.90979 0.88997 0.93325 0.89117 0.93354 0.90919 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.40 19.25 29.55 0.57 -4.83 16 2 C -0.11 -2.37 11.24 -37.12 -0.42 -2.79 16 3 C 0.23 5.17 5.43 -6.83 -0.04 5.13 16 4 N -0.80 -18.72 2.81 -62.77 -0.18 -18.90 16 5 C -0.25 -6.00 9.41 -15.06 -0.14 -6.14 16 6 H 0.12 2.94 7.17 -52.48 -0.38 2.56 16 7 C 0.03 0.64 4.91 -17.43 -0.09 0.55 16 8 N -0.82 -19.29 8.98 55.49 0.50 -18.79 16 9 Si 0.93 18.31 29.62 -169.99 -5.04 13.27 16 10 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 11 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 12 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 13 S 2.48 55.66 5.39 -107.50 -0.58 55.08 16 14 O -0.98 -24.50 16.77 -57.54 -0.96 -25.46 16 15 O -1.00 -23.94 16.54 -57.54 -0.95 -24.89 16 16 C -0.66 -12.37 5.94 37.16 0.22 -12.15 16 17 C -0.10 -1.58 4.69 -26.73 -0.13 -1.70 16 18 C -0.08 -1.14 2.27 -90.43 -0.21 -1.34 16 19 C -0.15 -2.06 5.10 -26.59 -0.14 -2.19 16 20 C 0.06 0.73 6.84 37.20 0.25 0.98 16 21 O -0.39 -5.05 10.77 -35.23 -0.38 -5.43 16 22 C 0.06 0.68 6.84 37.20 0.25 0.93 16 23 C -0.16 -1.84 5.42 -26.59 -0.14 -1.98 16 24 H 0.20 3.18 7.80 -54.09 -0.42 2.76 16 25 H 0.11 2.57 6.43 -51.93 -0.33 2.23 16 26 H 0.08 1.73 6.84 -51.93 -0.36 1.38 16 27 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 28 H 0.11 2.01 6.66 -51.92 -0.35 1.67 16 29 H 0.11 2.06 8.14 -51.93 -0.42 1.64 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.08 1.11 6.75 -51.93 -0.35 0.76 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 339.11 15.07 5.11 5.11 Total: -1.00 -28.85 339.11 -8.44 -37.29 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.97 Total: 8.25 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 0.01 Total: -25.53 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.32 Total: -37.69 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -2.30 Total: -55.78 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.04 Total: 13.27 kcal Atomic # 16 Polarization: 55.66 SS G_CDS: -0.58 Total: 55.08 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.85 -8.44 -37.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292443689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.336 kcal (2) G-P(sol) polarization free energy of solvation -28.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds