Wall clock time and date at job start Tue Mar 31 2020 03:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46874 * 251.02398 * 3 2 1 5 5 C 1.36938 * 119.99746 * 273.37575 * 4 3 2 6 6 H 1.08005 * 119.99531 * 186.54219 * 5 4 3 7 7 C 1.38806 * 120.00523 * 6.54474 * 5 4 3 8 8 N 1.31622 * 119.99788 * 25.63803 * 7 5 4 9 9 Si 1.86800 * 120.00336 * 205.63577 * 7 5 4 10 10 H 1.48497 * 109.47066 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46820 * 120.00022 * 9 7 5 12 12 H 1.48495 * 109.47341 * 240.00023 * 9 7 5 13 13 S 1.65599 * 120.00021 * 93.38072 * 4 3 2 14 14 O 1.42096 * 104.28034 * 153.92720 * 13 4 3 15 15 O 1.42100 * 104.27531 * 26.06555 * 13 4 3 16 16 C 1.81404 * 104.44657 * 269.99758 * 13 4 3 17 17 C 1.52996 * 109.46950 * 179.97438 * 16 13 4 18 18 C 1.53001 * 109.47275 * 180.02562 * 17 16 13 19 19 C 1.53179 * 109.54715 * 65.43774 * 18 17 16 20 20 C 1.53089 * 109.16178 * 176.84882 * 19 18 17 21 21 O 1.42906 * 109.41762 * 302.39530 * 20 19 18 22 22 C 1.42901 * 114.09791 * 61.16097 * 21 20 19 23 23 C 1.53088 * 109.41218 * 298.84148 * 22 21 20 24 24 H 4.40643 * 5.51436 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.47155 * 131.03086 * 3 2 1 26 26 H 1.08997 * 109.47378 * 11.02260 * 3 2 1 27 27 H 0.97003 * 120.00227 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47026 * 60.00441 * 16 13 4 29 29 H 1.08996 * 109.46941 * 299.99895 * 16 13 4 30 30 H 1.08999 * 109.47681 * 60.00006 * 17 16 13 31 31 H 1.09005 * 109.47189 * 299.99975 * 17 16 13 32 32 H 1.09011 * 109.60825 * 305.21825 * 18 17 16 33 33 H 1.08997 * 109.52086 * 296.75889 * 19 18 17 34 34 H 1.09000 * 109.51881 * 56.94643 * 19 18 17 35 35 H 1.08999 * 109.47735 * 182.41147 * 20 19 18 36 36 H 1.08999 * 109.47813 * 62.38235 * 20 19 18 37 37 H 1.08995 * 109.48230 * 178.85978 * 22 21 20 38 38 H 1.09003 * 109.49412 * 58.82703 * 22 21 20 39 39 H 1.09005 * 109.52637 * 297.70111 * 23 22 21 40 40 H 1.09005 * 109.52679 * 177.51730 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.4500 1.3062 5 6 3.2958 1.7871 1.5537 6 1 3.7540 2.1141 2.4754 7 6 2.8709 2.7222 0.6200 8 7 1.9042 2.4204 -0.2207 9 14 3.6709 4.4091 0.5567 10 1 4.7244 4.4967 1.5995 11 1 4.2807 4.6177 -0.7812 12 1 2.6439 5.4535 0.8008 13 16 3.4903 -0.6589 2.4833 14 8 4.4575 -0.0088 3.2962 15 8 3.8129 -1.8415 1.7645 16 6 1.9342 -0.8706 3.3915 17 6 2.1358 -1.8848 4.5191 18 6 0.8233 -2.0638 5.2847 19 6 -0.2240 -2.6991 4.3649 20 6 -1.5080 -2.9465 5.1609 21 8 -1.2176 -3.7819 6.2834 22 6 -0.2799 -3.2186 7.2029 23 6 1.0535 -2.9821 6.4889 24 1 -1.0501 0.0001 -0.0002 25 1 3.0090 0.6755 -0.7752 26 1 3.0098 -1.0078 -0.1965 27 1 1.6075 3.0737 -0.8735 28 1 1.1630 -1.2325 2.7114 29 1 1.6268 0.0862 3.8134 30 1 2.9072 -1.5235 5.1993 31 1 2.4431 -2.8415 4.0967 32 1 0.4655 -1.0935 5.6293 33 1 -0.4346 -2.0263 3.5336 34 1 0.1549 -3.6463 3.9812 35 1 -2.2425 -3.4376 4.5226 36 1 -1.9083 -1.9947 5.5101 37 1 -0.1295 -3.9057 8.0355 38 1 -0.6640 -2.2703 7.5790 39 1 1.4583 -3.9351 6.1480 40 1 1.7566 -2.5119 7.1765 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292443689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:35 Heat of formation + Delta-G solvation = -81.507597 kcal Electronic energy + Delta-G solvation = -23328.275402 eV Core-core repulsion = 19850.281201 eV Total energy + Delta-G solvation = -3477.994200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.41692 -38.07144 -37.75415 -36.67671 -36.53034 -33.73675 -32.86287 -32.22889 -31.77882 -28.31549 -26.61906 -25.61241 -24.50917 -22.90279 -21.03372 -20.26528 -19.61939 -18.71460 -18.20999 -17.36392 -17.02770 -16.75801 -16.69098 -16.32008 -15.97295 -15.60118 -15.29925 -15.00916 -14.95240 -14.39939 -14.17065 -13.66088 -13.55849 -13.39359 -13.12332 -13.09248 -12.82420 -12.71366 -12.60311 -12.46818 -12.26432 -12.25462 -12.02342 -11.91520 -11.57842 -11.37567 -11.31204 -11.07809 -10.91923 -10.57015 -10.41894 -10.01752 -8.29685 -5.77385 -0.29677 1.46861 1.53002 1.64416 1.91263 2.35992 2.45964 2.69332 2.89842 2.96158 3.25662 3.51839 3.64747 3.69163 3.81401 3.95594 4.05018 4.13346 4.17991 4.33069 4.42413 4.51747 4.52718 4.59818 4.75655 4.77713 4.80834 4.89835 4.94374 4.98388 5.03843 5.12442 5.21491 5.27087 5.38819 5.46834 5.55632 6.24625 6.39528 6.84553 7.21661 7.25324 8.63459 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.004436 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.752963 B = 6310.658919 C = 6636.376890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.150 4.150 3 C 0.237 3.763 4 N -0.825 5.825 5 C -0.295 4.295 6 H 0.109 0.891 7 C 0.002 3.998 8 N -0.846 5.846 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.273 1.273 12 H -0.276 1.276 13 S 2.516 3.484 14 O -1.007 7.007 15 O -1.013 7.013 16 C -0.638 4.638 17 C -0.104 4.104 18 C -0.081 4.081 19 C -0.155 4.155 20 C 0.062 3.938 21 O -0.403 6.403 22 C 0.059 3.941 23 C -0.153 4.153 24 H 0.232 0.768 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.274 0.726 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 -5.546 7.673 11.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.152 4.152 3 C 0.111 3.889 4 N -0.649 5.649 5 C -0.436 4.436 6 H 0.127 0.873 7 C -0.207 4.207 8 N -0.485 5.485 9 Si 0.803 3.197 10 H -0.191 1.191 11 H -0.199 1.199 12 H -0.202 1.202 13 S 2.617 3.383 14 O -0.997 6.997 15 O -1.003 7.003 16 C -0.763 4.763 17 C -0.142 4.142 18 C -0.100 4.100 19 C -0.193 4.193 20 C -0.014 4.014 21 O -0.322 6.322 22 C -0.018 4.018 23 C -0.191 4.191 24 H 0.248 0.752 25 H 0.119 0.881 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.005 -6.247 7.776 11.643 hybrid contribution -0.457 1.367 -0.270 1.466 sum -6.462 -4.880 7.506 11.042 Atomic orbital electron populations 1.25037 0.96142 1.05468 1.00186 1.23588 0.95012 0.96313 1.00302 1.18277 0.84631 0.99066 0.86895 1.54381 1.74577 1.16766 1.19151 1.19940 1.34768 0.81129 1.07776 0.87342 1.26050 0.95290 1.02517 0.96848 1.70302 1.22036 1.36552 1.19565 0.85075 0.78557 0.77367 0.78663 1.19127 1.19862 1.20186 1.10836 0.80439 0.73067 0.73917 1.93357 1.60740 1.74786 1.70829 1.93350 1.85514 1.50120 1.71325 1.30827 1.26441 1.07254 1.11828 1.21362 0.99528 0.97520 0.95821 1.21156 0.94090 0.99429 0.95333 1.22306 0.96533 1.01436 0.99029 1.22648 0.96041 0.95262 0.87496 1.87884 1.62970 1.45803 1.35531 1.22717 0.87658 0.99662 0.91724 1.22307 0.99092 1.00274 0.97448 0.75165 0.88073 0.89642 0.91512 0.86222 0.86279 0.90864 0.91341 0.90605 0.90855 0.91594 0.87742 0.92435 0.87198 0.92347 0.91257 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.51 19.25 74.32 1.43 -8.08 16 2 C -0.15 -6.47 11.24 31.12 0.35 -6.12 16 3 C 0.24 10.71 5.43 84.57 0.46 11.17 16 4 N -0.83 -39.21 2.81 -352.51 -0.99 -40.20 16 5 C -0.29 -14.62 9.41 84.03 0.79 -13.83 16 6 H 0.11 5.46 7.17 -2.91 -0.02 5.44 16 7 C 0.00 0.08 4.91 84.86 0.42 0.49 16 8 N -0.85 -40.31 8.98 21.65 0.19 -40.12 16 9 Si 0.98 38.26 29.62 68.60 2.03 40.30 16 10 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 11 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 12 H -0.28 -10.50 7.11 99.48 0.71 -9.80 16 13 S 2.52 112.29 5.39 -56.49 -0.30 111.99 16 14 O -1.01 -50.40 16.77 -127.65 -2.14 -52.54 16 15 O -1.01 -48.30 16.54 -127.65 -2.11 -50.41 16 16 C -0.64 -22.80 5.94 71.98 0.43 -22.37 16 17 C -0.10 -3.16 4.69 30.59 0.14 -3.02 16 18 C -0.08 -2.02 2.27 -10.67 -0.02 -2.04 16 19 C -0.16 -3.79 5.10 30.68 0.16 -3.63 16 20 C 0.06 1.31 6.84 72.01 0.49 1.80 16 21 O -0.40 -9.36 10.77 -148.98 -1.60 -10.97 16 22 C 0.06 1.10 6.84 72.01 0.49 1.59 16 23 C -0.15 -3.19 5.42 30.68 0.17 -3.02 16 24 H 0.23 6.73 7.80 -4.41 -0.03 6.70 16 25 H 0.10 4.76 6.43 -2.39 -0.02 4.74 16 26 H 0.09 3.67 6.84 -2.39 -0.02 3.65 16 27 H 0.27 12.37 8.31 -92.71 -0.77 11.60 16 28 H 0.12 4.16 6.66 -2.39 -0.02 4.15 16 29 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.07 1.86 6.75 -2.39 -0.02 1.85 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -61.13 339.11 1.40 -59.74 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 1.02 Total: 29.28 kcal Atomic # 6 Polarization: -52.36 SS G_CDS: 5.30 Total: -47.06 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -0.80 Total: -80.32 kcal Atomic # 8 Polarization: -108.06 SS G_CDS: -5.86 Total: -113.91 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.30 kcal Atomic # 16 Polarization: 112.29 SS G_CDS: -0.30 Total: 111.99 kcal Total: -61.13 1.40 -59.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292443689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.771 kcal (2) G-P(sol) polarization free energy of solvation -61.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds