Wall clock time and date at job start Tue Mar 31 2020 03:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46769 * 64.99669 * 4 3 2 6 6 C 1.46901 * 110.99975 * 66.05138 * 5 4 3 7 7 C 1.50700 * 109.47195 * 189.99534 * 6 5 4 8 8 H 1.08003 * 119.99718 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00193 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99943 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00363 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46825 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46951 * 120.00024 * 11 9 7 14 14 H 1.48493 * 109.47292 * 240.00370 * 11 9 7 15 15 C 1.38487 * 110.99662 * 189.99954 * 5 4 3 16 16 C 1.41113 * 120.30239 * 300.00003 * 15 5 4 17 17 N 1.30355 * 120.41033 * 179.97438 * 16 15 5 18 18 N 1.39873 * 121.03130 * 0.02562 * 17 16 15 19 19 C 1.46505 * 119.71926 * 180.02562 * 18 17 16 20 20 C 1.34758 * 120.55984 * 0.02562 * 18 17 16 21 21 O 1.22155 * 120.20889 * 179.97438 * 20 18 17 22 22 C 1.38306 * 120.29446 * 119.72409 * 15 5 4 23 23 Cl 1.73598 * 120.49353 * 0.02562 * 22 15 5 24 24 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 25 25 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 26 26 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 28 28 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 29 29 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 30 30 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 31 31 H 1.09001 * 109.46841 * 309.99465 * 6 5 4 32 32 H 1.08998 * 109.47268 * 69.99486 * 6 5 4 33 33 H 0.97000 * 120.00478 * 179.97438 * 10 9 7 34 34 H 1.07998 * 119.79714 * 359.97438 * 16 15 5 35 35 H 1.09007 * 109.46740 * 0.02562 * 19 18 17 36 36 H 1.09004 * 109.46778 * 119.99854 * 19 18 17 37 37 H 1.08995 * 109.46816 * 240.00187 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9778 0.5624 -1.2543 6 6 3.6968 1.4348 -2.4023 7 6 3.9333 0.6738 -3.6813 8 1 4.2594 -0.3552 -3.6450 9 6 3.7325 1.2908 -4.8979 10 7 3.3350 2.5436 -4.9421 11 14 4.0250 0.3473 -6.4833 12 1 4.4640 -1.0347 -6.1630 13 1 2.7657 0.2967 -7.2687 14 1 5.0773 1.0296 -7.2785 15 6 5.3219 0.2336 -1.1982 16 6 6.2920 1.2363 -0.9864 17 7 7.5577 0.9290 -0.9328 18 7 7.9855 -0.3941 -1.0832 19 6 9.4152 -0.7072 -1.0174 20 6 7.0937 -1.3834 -1.2883 21 8 7.4745 -2.5367 -1.4193 22 6 5.7251 -1.0814 -1.3436 23 17 4.5553 -2.3384 -1.5989 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.9783 2.1768 0.0902 30 1 3.8508 0.5687 0.8427 31 1 2.6586 1.7646 -2.3624 32 1 4.3553 2.3028 -2.3689 33 1 3.1940 2.9779 -5.7979 34 1 5.9839 2.2646 -0.8681 35 1 9.9802 0.2093 -0.8469 36 1 9.5973 -1.4035 -0.1987 37 1 9.7316 -1.1601 -1.9569 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301745784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:15 Heat of formation + Delta-G solvation = 0.842056 kcal Electronic energy + Delta-G solvation = -23184.850189 eV Core-core repulsion = 19604.842888 eV Total energy + Delta-G solvation = -3580.007301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.76782 -38.55192 -37.21750 -36.42797 -35.68661 -33.25569 -32.61387 -30.87136 -29.37132 -27.66317 -26.48086 -25.59645 -23.91224 -23.16299 -22.53556 -20.35890 -18.14109 -17.52827 -16.94907 -16.24510 -16.01103 -15.76171 -15.47728 -15.09653 -14.64697 -14.44406 -13.96379 -13.72493 -13.42346 -13.11413 -13.05315 -12.44563 -12.31063 -12.23137 -11.87695 -11.59115 -11.47263 -11.34274 -11.29259 -10.89109 -10.74468 -10.57342 -10.28863 -10.04291 -9.67444 -9.38335 -9.23380 -9.09954 -8.55663 -8.13162 -7.75447 -6.15294 -4.15338 0.62284 1.97810 2.16251 2.75755 3.26857 3.35237 3.43501 3.56076 4.09302 4.15740 4.38439 4.47228 5.01964 5.18684 5.22917 5.31320 5.37146 5.39380 5.46302 5.56307 5.63791 5.66311 5.68395 5.77459 5.80034 5.94242 6.09919 6.14027 6.25511 6.86724 6.97591 7.50168 7.61517 7.75104 7.85157 7.92032 8.06285 8.25742 8.93297 9.50090 10.95285 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.007737 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.843619 B = 3617.904709 C = 4932.070138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.068 3.932 4 C 0.060 3.940 5 N -0.494 5.494 6 C 0.195 3.805 7 C -0.510 4.510 8 H 0.070 0.930 9 C 0.062 3.938 10 N -0.897 5.897 11 Si 0.890 3.110 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.284 1.284 15 C 0.174 3.826 16 C 0.071 3.929 17 N -0.223 5.223 18 N -0.417 5.417 19 C 0.104 3.896 20 C 0.512 3.488 21 O -0.535 6.535 22 C -0.095 4.095 23 Cl 0.003 6.997 24 H 0.031 0.969 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.001 0.999 33 H 0.262 0.738 34 H 0.193 0.807 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 0.012 11.358 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.009 4.009 4 C -0.067 4.067 5 N -0.217 5.217 6 C 0.073 3.927 7 C -0.549 4.549 8 H 0.088 0.912 9 C -0.140 4.140 10 N -0.536 5.536 11 Si 0.718 3.282 12 H -0.193 1.193 13 H -0.208 1.208 14 H -0.211 1.211 15 C 0.071 3.929 16 C -0.130 4.130 17 N -0.037 5.037 18 N -0.237 5.237 19 C -0.037 4.037 20 C 0.307 3.693 21 O -0.413 6.413 22 C -0.135 4.135 23 Cl 0.033 6.967 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.019 0.981 33 H 0.071 0.929 34 H 0.210 0.790 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.439 -0.909 11.176 11.729 hybrid contribution -0.626 0.231 -1.173 1.350 sum 2.813 -0.678 10.003 10.413 Atomic orbital electron populations 1.22661 0.82203 1.02193 0.99324 1.88019 1.18428 1.27090 1.95183 1.22557 0.92868 0.85386 1.00125 1.22133 0.94516 0.97698 0.92310 1.59472 1.10348 1.47601 1.04254 1.20017 0.97570 0.89607 0.85523 1.21221 1.45128 0.99079 0.89457 0.91184 1.24888 0.95086 0.94865 0.99169 1.69930 1.46753 1.11090 1.25817 0.86528 0.77918 0.80514 0.83224 1.19348 1.20808 1.21061 1.19665 0.91640 0.90875 0.90718 1.24621 0.88621 1.01822 0.97977 1.75072 1.17852 0.98299 1.12430 1.49511 1.08894 1.02828 1.62467 1.21756 0.76446 1.02236 1.03300 1.16942 0.86256 0.85972 0.80105 1.90990 1.80235 1.18126 1.51921 1.22303 0.90562 0.91357 1.09252 1.98364 1.55099 1.49241 1.94021 0.95047 0.94107 0.90177 0.93628 0.91916 0.93119 0.90644 0.93355 0.98112 0.92854 0.79043 0.88939 0.90608 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.17 10.65 -35.23 -0.38 -6.55 16 3 C 0.07 1.01 6.01 37.16 0.22 1.23 16 4 C 0.06 0.91 4.92 -3.82 -0.02 0.89 16 5 N -0.49 -9.54 3.83 -172.33 -0.66 -10.20 16 6 C 0.19 4.43 4.48 -4.98 -0.02 4.40 16 7 C -0.51 -13.49 8.72 -34.44 -0.30 -13.79 16 8 H 0.07 1.92 6.99 -52.48 -0.37 1.55 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -24.93 13.29 55.43 0.74 -24.20 16 11 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 15 C 0.17 3.27 3.86 -83.74 -0.32 2.95 16 16 C 0.07 1.15 9.88 -17.09 -0.17 0.98 16 17 N -0.22 -3.57 11.50 30.81 0.35 -3.22 16 18 N -0.42 -6.97 3.91 -70.37 -0.27 -7.25 16 19 C 0.10 1.27 10.35 59.85 0.62 1.89 16 20 C 0.51 10.08 7.48 -15.51 -0.12 9.97 16 21 O -0.53 -11.44 16.62 4.78 0.08 -11.36 16 22 C -0.10 -1.93 6.12 -38.79 -0.24 -2.16 16 23 Cl 0.00 0.07 27.71 -51.86 -1.44 -1.37 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.03 6.17 -51.93 -0.32 0.71 16 29 H 0.05 0.65 7.48 -51.93 -0.39 0.26 16 30 H 0.08 1.08 8.05 -51.93 -0.42 0.67 16 31 H 0.05 1.16 6.00 -51.93 -0.31 0.85 16 32 H 0.00 0.03 7.17 -51.93 -0.37 -0.34 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.19 2.58 7.17 -52.49 -0.38 2.20 16 35 H 0.09 0.89 8.09 -51.92 -0.42 0.47 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -31.92 330.91 -5.59 -37.50 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -4.65 Total: -4.44 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 0.67 Total: 9.49 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.16 Total: -44.86 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.30 Total: -17.91 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -1.44 Total: -1.37 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.92 -5.59 -37.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301745784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.344 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds