Wall clock time and date at job start Tue Mar 31 2020 03:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46769 * 64.99669 * 4 3 2 6 6 C 1.46901 * 110.99975 * 66.05138 * 5 4 3 7 7 C 1.50700 * 109.47195 * 189.99534 * 6 5 4 8 8 H 1.08003 * 119.99718 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00193 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99943 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00363 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46825 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46951 * 120.00024 * 11 9 7 14 14 H 1.48493 * 109.47292 * 240.00370 * 11 9 7 15 15 C 1.38487 * 110.99662 * 189.99954 * 5 4 3 16 16 C 1.41113 * 120.30239 * 300.00003 * 15 5 4 17 17 N 1.30355 * 120.41033 * 179.97438 * 16 15 5 18 18 N 1.39873 * 121.03130 * 0.02562 * 17 16 15 19 19 C 1.46505 * 119.71926 * 180.02562 * 18 17 16 20 20 C 1.34758 * 120.55984 * 0.02562 * 18 17 16 21 21 O 1.22155 * 120.20889 * 179.97438 * 20 18 17 22 22 C 1.38306 * 120.29446 * 119.72409 * 15 5 4 23 23 Cl 1.73598 * 120.49353 * 0.02562 * 22 15 5 24 24 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 25 25 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 26 26 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 28 28 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 29 29 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 30 30 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 31 31 H 1.09001 * 109.46841 * 309.99465 * 6 5 4 32 32 H 1.08998 * 109.47268 * 69.99486 * 6 5 4 33 33 H 0.97000 * 120.00478 * 179.97438 * 10 9 7 34 34 H 1.07998 * 119.79714 * 359.97438 * 16 15 5 35 35 H 1.09007 * 109.46740 * 0.02562 * 19 18 17 36 36 H 1.09004 * 109.46778 * 119.99854 * 19 18 17 37 37 H 1.08995 * 109.46816 * 240.00187 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9778 0.5624 -1.2543 6 6 3.6968 1.4348 -2.4023 7 6 3.9333 0.6738 -3.6813 8 1 4.2594 -0.3552 -3.6450 9 6 3.7325 1.2908 -4.8979 10 7 3.3350 2.5436 -4.9421 11 14 4.0250 0.3473 -6.4833 12 1 4.4640 -1.0347 -6.1630 13 1 2.7657 0.2967 -7.2687 14 1 5.0773 1.0296 -7.2785 15 6 5.3219 0.2336 -1.1982 16 6 6.2920 1.2363 -0.9864 17 7 7.5577 0.9290 -0.9328 18 7 7.9855 -0.3941 -1.0832 19 6 9.4152 -0.7072 -1.0174 20 6 7.0937 -1.3834 -1.2883 21 8 7.4745 -2.5367 -1.4193 22 6 5.7251 -1.0814 -1.3436 23 17 4.5553 -2.3384 -1.5989 24 1 -0.3634 0.5137 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.9783 2.1768 0.0902 30 1 3.8508 0.5687 0.8427 31 1 2.6586 1.7646 -2.3624 32 1 4.3553 2.3028 -2.3689 33 1 3.1940 2.9779 -5.7979 34 1 5.9839 2.2646 -0.8681 35 1 9.9802 0.2093 -0.8469 36 1 9.5973 -1.4035 -0.1987 37 1 9.7316 -1.1601 -1.9569 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301745784.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:13 Heat of formation + Delta-G solvation = -21.817587 kcal Electronic energy + Delta-G solvation = -23185.832785 eV Core-core repulsion = 19604.842888 eV Total energy + Delta-G solvation = -3580.989897 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.098 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.17992 -39.97284 -38.48965 -37.84881 -37.19744 -34.90950 -34.25126 -32.25801 -30.77559 -29.24774 -27.75352 -26.78959 -25.27605 -24.93051 -23.85189 -21.79170 -19.59241 -18.87413 -18.60958 -17.65496 -17.47559 -17.21005 -16.82294 -16.64161 -16.12017 -15.79718 -15.40036 -15.12924 -14.79176 -14.57636 -14.36230 -13.89701 -13.64906 -13.42935 -13.37782 -13.01465 -12.91696 -12.79800 -12.67076 -12.66914 -12.46807 -12.11057 -11.79564 -11.71802 -11.33074 -11.09897 -10.62473 -10.54645 -10.32640 -9.60856 -9.25794 -8.21459 -6.24757 -0.81886 0.56651 0.82643 1.32199 1.33164 1.37833 1.48887 2.12095 2.37324 2.71447 3.02618 3.12633 3.15434 3.65359 3.88736 4.18385 4.24974 4.33309 4.42880 4.45251 4.53101 4.58105 4.64990 4.68882 4.72420 4.84611 4.87003 4.93896 4.99566 5.14262 5.24267 5.67486 5.99784 6.24515 6.37268 6.40553 6.53473 6.64675 6.89006 7.43039 8.88624 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.009924 B = 0.007737 C = 0.005676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.843619 B = 3617.904709 C = 4932.070138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.401 6.401 3 C 0.067 3.933 4 C 0.056 3.944 5 N -0.508 5.508 6 C 0.212 3.788 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 N -0.919 5.919 11 Si 0.935 3.065 12 H -0.279 1.279 13 H -0.277 1.277 14 H -0.279 1.279 15 C 0.181 3.819 16 C 0.068 3.932 17 N -0.207 5.207 18 N -0.413 5.413 19 C 0.094 3.906 20 C 0.504 3.496 21 O -0.563 6.563 22 C -0.123 4.123 23 Cl -0.014 7.014 24 H 0.058 0.942 25 H 0.032 0.968 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.000 1.000 33 H 0.264 0.736 34 H 0.223 0.777 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 1.213 12.429 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.320 6.320 3 C -0.009 4.009 4 C -0.069 4.069 5 N -0.230 5.230 6 C 0.089 3.911 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.177 4.177 10 N -0.560 5.560 11 Si 0.762 3.238 12 H -0.204 1.204 13 H -0.202 1.202 14 H -0.204 1.204 15 C 0.077 3.923 16 C -0.132 4.132 17 N -0.021 5.021 18 N -0.232 5.232 19 C -0.045 4.045 20 C 0.300 3.700 21 O -0.444 6.444 22 C -0.163 4.163 23 Cl 0.015 6.985 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.053 0.947 32 H 0.017 0.983 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.141 0.859 36 H 0.107 0.893 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.111 0.313 12.265 12.939 hybrid contribution -0.820 -0.115 -1.434 1.656 sum 3.291 0.198 10.831 11.321 Atomic orbital electron populations 1.22800 0.80654 1.03033 1.00194 1.87971 1.20321 1.28303 1.95396 1.22631 0.92553 0.84919 1.00826 1.22350 0.94987 0.99219 0.90370 1.59272 1.10941 1.47772 1.05039 1.19630 0.96596 0.89338 0.85507 1.21488 1.44345 0.98655 0.91269 0.92705 1.25429 0.95375 0.95557 1.01349 1.69981 1.47800 1.11829 1.26344 0.85850 0.78031 0.78992 0.80969 1.20427 1.20233 1.20435 1.19831 0.92002 0.90924 0.89504 1.24993 0.88013 1.02503 0.97711 1.75139 1.17654 0.97687 1.11613 1.49805 1.10121 1.02445 1.60859 1.22131 0.74229 1.04201 1.03982 1.16994 0.86491 0.86206 0.80309 1.90961 1.80658 1.19155 1.53656 1.22550 0.90848 0.91741 1.11127 1.98344 1.55741 1.50085 1.94342 0.92394 0.94912 0.89491 0.89988 0.93956 0.90052 0.89599 0.94669 0.98268 0.92717 0.76082 0.85922 0.89335 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -13.01 10.65 -148.98 -1.59 -14.60 16 3 C 0.07 1.89 6.01 71.98 0.43 2.32 16 4 C 0.06 1.58 4.92 86.30 0.42 2.00 16 5 N -0.51 -19.07 3.83 -699.11 -2.68 -21.75 16 6 C 0.21 9.52 4.48 85.56 0.38 9.90 16 7 C -0.52 -27.43 8.72 25.60 0.22 -27.20 16 8 H 0.05 3.03 6.99 -2.91 -0.02 3.01 16 9 C 0.02 1.20 5.46 84.65 0.46 1.66 16 10 N -0.92 -50.76 13.29 21.45 0.28 -50.47 16 11 Si 0.93 44.30 29.54 68.60 2.03 46.32 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 C 0.18 6.58 3.86 38.81 0.15 6.73 16 16 C 0.07 2.05 9.88 85.62 0.85 2.90 16 17 N -0.21 -6.11 11.50 -56.44 -0.65 -6.76 16 18 N -0.41 -13.09 3.91 -494.60 -1.93 -15.02 16 19 C 0.09 2.10 10.35 127.77 1.32 3.42 16 20 C 0.50 19.63 7.48 84.74 0.63 20.26 16 21 O -0.56 -24.22 16.62 -5.82 -0.10 -24.31 16 22 C -0.12 -4.96 6.12 22.78 0.14 -4.82 16 23 Cl -0.01 -0.60 27.71 -2.72 -0.08 -0.67 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.04 1.35 6.17 -2.39 -0.01 1.34 16 29 H 0.08 1.80 7.48 -2.39 -0.02 1.79 16 30 H 0.09 2.26 8.05 -2.39 -0.02 2.24 16 31 H 0.04 1.69 6.00 -2.39 -0.01 1.68 16 32 H 0.00 -0.02 7.17 -2.39 -0.02 -0.03 16 33 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.22 5.17 7.17 -2.91 -0.02 5.15 16 35 H 0.12 1.97 8.09 -2.38 -0.02 1.95 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -68.52 330.91 2.65 -65.87 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 1.09 Total: 2.24 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 6.26 Total: 19.15 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -4.97 Total: -94.00 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -1.68 Total: -38.91 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.67 kcal Total: -68.52 2.65 -65.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301745784.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.052 kcal (2) G-P(sol) polarization free energy of solvation -68.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds