Wall clock time and date at job start Tue Mar 31 2020 04:31:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.35828 * 118.69634 * 2 1
4 4 C 1.40838 * 120.55488 * 180.02562 * 3 2 1
5 5 C 1.38430 * 134.90087 * 180.02562 * 4 3 2
6 6 N 1.33886 * 107.84552 * 179.97438 * 5 4 3
7 7 H 0.97007 * 125.01999 * 179.97438 * 6 5 4
8 8 N 1.39983 * 109.96206 * 359.97438 * 6 5 4
9 9 C 1.31470 * 109.01738 * 359.97438 * 8 6 5
10 10 C 1.46666 * 134.99174 * 180.02562 * 9 8 6
11 11 C 1.47163 * 120.72456 * 359.97438 * 10 9 8
12 12 O 1.21646 * 120.00265 * 335.86320 * 11 10 9
13 13 N 1.34776 * 120.00005 * 155.86199 * 11 10 9
14 14 C 1.47584 * 134.49693 * 174.54552 * 13 11 10
15 15 C 1.53940 * 86.11959 * 155.36155 * 14 13 11
16 16 O 1.42900 * 113.74216 * 269.15746 * 15 14 13
17 17 C 1.50698 * 113.74395 * 137.95695 * 15 14 13
18 18 H 1.08002 * 119.99306 * 1.92686 * 17 15 14
19 19 C 1.37876 * 120.00204 * 181.92368 * 17 15 14
20 20 N 1.31519 * 119.99483 * 179.97438 * 19 17 15
21 21 Si 1.86797 * 120.00057 * 0.02562 * 19 17 15
22 22 H 1.48498 * 109.46913 * 269.99765 * 21 19 17
23 23 H 1.48497 * 109.47136 * 29.99740 * 21 19 17
24 24 H 1.48495 * 109.47220 * 149.99838 * 21 19 17
25 25 C 1.47815 * 134.45782 * 354.42062 * 13 11 10
26 26 C 1.38594 * 118.54706 * 180.25068 * 10 9 8
27 27 H 1.09003 * 109.47250 * 89.99927 * 1 2 3
28 28 H 1.09008 * 109.47337 * 209.99511 * 1 2 3
29 29 H 1.09003 * 109.47543 * 329.99913 * 1 2 3
30 30 H 1.08001 * 119.72328 * 0.02562 * 3 2 1
31 31 H 1.08000 * 126.07431 * 359.97438 * 5 4 3
32 32 H 1.09006 * 113.76132 * 41.06247 * 14 13 11
33 33 H 1.08998 * 113.87381 * 269.68067 * 14 13 11
34 34 H 0.96703 * 114.00170 * 178.07475 * 16 15 14
35 35 H 0.97004 * 119.99364 * 179.97438 * 20 19 17
36 36 H 1.08995 * 113.77234 * 90.37590 * 25 13 11
37 37 H 1.09009 * 113.83314 * 318.91072 * 25 13 11
38 38 H 1.08001 * 119.31496 * 179.71100 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1592 1.1915 0.0000
4 6 3.5668 1.2371 -0.0005
5 6 4.5117 2.2488 -0.0003
6 7 5.7231 1.6789 -0.0006
7 1 6.5651 2.1607 -0.0008
8 7 5.5954 0.2849 -0.0005
9 6 4.3186 -0.0284 0.0005
10 6 3.5586 -1.2828 0.0015
11 6 4.2510 -2.5813 0.0011
12 8 5.3851 -2.6659 -0.4308
13 7 3.6286 -3.6770 0.4792
14 6 3.9635 -5.1131 0.5399
15 6 3.0047 -5.1788 1.7425
16 8 3.6441 -4.9562 3.0009
17 6 2.1143 -6.3945 1.7429
18 1 2.2101 -7.1342 0.9618
19 6 1.1775 -6.5626 2.7405
20 7 0.4002 -7.6235 2.7405
21 14 1.0116 -5.2830 4.0912
22 1 1.9114 -5.6343 5.2191
23 1 1.3848 -3.9485 3.5574
24 1 -0.3933 -5.2490 4.5710
25 6 2.3373 -3.9218 1.1555
26 6 2.1742 -1.2184 -0.0030
27 1 -0.3634 0.0000 -1.0277
28 1 -0.3634 -0.8901 0.5138
29 1 -0.3634 0.8900 0.5138
30 1 1.5936 2.1115 0.0004
31 1 4.3077 3.3094 0.0001
32 1 5.0043 -5.3109 0.7965
33 1 3.6231 -5.6824 -0.3250
34 1 3.0405 -4.9674 3.7563
35 1 -0.2586 -7.7419 3.4426
36 1 1.5171 -4.1389 0.4712
37 1 2.0820 -3.1704 1.9028
38 1 1.6022 -2.1345 -0.0071
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000329392216.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:31:34
Heat of formation + Delta-G solvation = 66.472573 kcal
Electronic energy + Delta-G solvation = -24287.834022 eV
Core-core repulsion = 20713.105523 eV
Total energy + Delta-G solvation = -3574.728499 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 301.121 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.29785 -39.70727 -37.76253 -37.09074 -34.40055 -32.54582 -32.50847 -31.29842
-30.39200 -28.52832 -26.56351 -25.69234 -25.44742 -24.05195 -21.61897 -21.13137
-19.93655 -18.60214 -18.15470 -17.45723 -17.07418 -16.42727 -16.04861 -15.39574
-15.12047 -14.71278 -14.65046 -14.32396 -13.65511 -13.58233 -13.48619 -13.29502
-13.02803 -12.64082 -12.38995 -12.18326 -12.12689 -11.91801 -11.57908 -11.27437
-11.20925 -10.92168 -10.58818 -10.53164 -10.24306 -10.09939 -9.64759 -9.25386
-8.97355 -8.85559 -8.62622 -7.97698 -7.56781 -6.40584 -4.46616 0.33604
1.73968 2.20509 2.56826 3.01221 3.04769 3.15781 3.23952 3.40742
3.97085 4.05006 4.15328 4.40054 4.68428 4.80085 4.85604 5.05508
5.12220 5.22626 5.26799 5.45924 5.49687 5.61200 5.66045 5.89708
5.92814 6.09546 6.12087 6.21119 6.24218 6.29962 6.41749 6.53582
6.60012 6.64202 6.78459 6.94052 7.23004 7.55488 8.05534 8.34618
8.55476 8.63655 8.74834 9.17265 10.71549
Molecular weight = 301.12amu
Principal moments of inertia in cm(-1)
A = 0.018791 B = 0.004750 C = 0.004210
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1489.755664 B = 5892.824148 C = 6649.624326
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C -0.129 4.129
3 C -0.028 4.028
4 C -0.212 4.212
5 C 0.081 3.919
6 N -0.433 5.433
7 H 0.443 0.557
8 N -0.272 5.272
9 C 0.134 3.866
10 C -0.100 4.100
11 C 0.574 3.426
12 O -0.542 6.542
13 N -0.631 5.631
14 C 0.129 3.871
15 C 0.195 3.805
16 O -0.552 6.552
17 C -0.536 4.536
18 H 0.092 0.908
19 C 0.081 3.919
20 N -0.877 5.877
21 Si 0.854 3.146
22 H -0.267 1.267
23 H -0.254 1.254
24 H -0.283 1.283
25 C 0.059 3.941
26 C -0.035 4.035
27 H 0.068 0.932
28 H 0.069 0.931
29 H 0.064 0.936
30 H 0.125 0.875
31 H 0.188 0.812
32 H 0.076 0.924
33 H 0.096 0.904
34 H 0.352 0.648
35 H 0.270 0.730
36 H 0.096 0.904
37 H 0.072 0.928
38 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.354 20.652 -4.047 21.047
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.131 4.131
3 C -0.048 4.048
4 C -0.222 4.222
5 C -0.075 4.075
6 N -0.133 5.133
7 H 0.287 0.713
8 N -0.098 5.098
9 C -0.024 4.024
10 C -0.106 4.106
11 C 0.365 3.635
12 O -0.421 6.421
13 N -0.365 5.365
14 C 0.008 3.992
15 C 0.154 3.846
16 O -0.363 6.363
17 C -0.573 4.573
18 H 0.110 0.890
19 C -0.124 4.124
20 N -0.512 5.512
21 Si 0.683 3.317
22 H -0.193 1.193
23 H -0.179 1.179
24 H -0.209 1.209
25 C -0.064 4.064
26 C -0.058 4.058
27 H 0.087 0.913
28 H 0.088 0.912
29 H 0.083 0.917
30 H 0.143 0.857
31 H 0.205 0.795
32 H 0.095 0.905
33 H 0.114 0.886
34 H 0.203 0.797
35 H 0.081 0.919
36 H 0.114 0.886
37 H 0.090 0.910
38 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 1.960 20.211 -4.634 20.828
hybrid contribution -1.112 1.280 1.142 2.044
sum 0.848 21.491 -3.492 21.789
Atomic orbital electron populations
1.20800 0.90695 1.02963 1.02291 1.19118 0.96447 0.92289 1.05207
1.20051 0.90760 0.97543 0.96446 1.19546 0.94815 0.91561 1.16317
1.22669 0.85220 0.98861 1.00780 1.46515 1.08006 1.06237 1.52550
0.71291 1.77820 1.16967 0.87428 1.27546 1.21533 0.90050 0.93057
0.97734 1.19911 0.92115 0.89671 1.08880 1.17531 0.85553 0.82634
0.77811 1.90777 1.17686 1.85601 1.48009 1.50032 1.21449 1.07079
1.57921 1.23276 1.00668 0.78080 0.97213 1.20562 0.90254 0.91817
0.81942 1.86487 1.38880 1.95009 1.15895 1.21241 1.16951 1.06037
1.13104 0.89025 1.24985 0.94957 0.95138 0.97296 1.69863 1.20991
1.26752 1.33624 0.87397 0.78208 0.82859 0.83285 1.19348 1.17904
1.20919 1.24748 0.86987 0.99283 0.95382 1.21438 0.92456 0.98552
0.93318 0.91326 0.91228 0.91690 0.85730 0.79473 0.90535 0.88621
0.79693 0.91924 0.88604 0.90999 0.84272
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.03 9.92 36.00 0.36 -0.67 16
2 C -0.13 -1.60 5.82 -105.24 -0.61 -2.21 16
3 C -0.03 -0.31 9.58 -39.46 -0.38 -0.69 16
4 C -0.21 -2.75 6.34 -105.21 -0.67 -3.42 16
5 C 0.08 0.74 12.08 -16.59 -0.20 0.54 16
6 N -0.43 -4.68 7.18 30.86 0.22 -4.46 16
7 H 0.44 2.89 8.96 -182.68 -1.64 1.25 16
8 N -0.27 -4.73 12.47 34.35 0.43 -4.30 16
9 C 0.13 2.37 7.29 -80.99 -0.59 1.78 16
10 C -0.10 -1.86 5.99 -102.74 -0.62 -2.47 16
11 C 0.57 12.58 7.84 -12.64 -0.10 12.48 16
12 O -0.54 -13.50 17.37 5.24 0.09 -13.41 16
13 N -0.63 -13.38 3.58 -179.46 -0.64 -14.02 16
14 C 0.13 2.78 8.23 -2.97 -0.02 2.76 16
15 C 0.20 4.50 1.06 -90.85 -0.10 4.40 16
16 O -0.55 -13.35 13.35 -35.23 -0.47 -13.82 16
17 C -0.54 -13.74 9.19 -34.44 -0.32 -14.06 16
18 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16
19 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16
20 N -0.88 -24.32 13.96 55.43 0.77 -23.55 16
21 Si 0.85 18.72 24.31 -169.99 -4.13 14.59 16
22 H -0.27 -5.78 7.05 56.52 0.40 -5.38 16
23 H -0.25 -5.20 5.16 56.52 0.29 -4.91 16
24 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16
25 C 0.06 1.19 4.77 -2.84 -0.01 1.17 16
26 C -0.04 -0.54 8.39 -39.20 -0.33 -0.87 16
27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
28 H 0.07 0.66 8.06 -51.92 -0.42 0.24 16
29 H 0.06 0.49 8.04 -51.93 -0.42 0.07 16
30 H 0.12 0.95 8.04 -52.49 -0.42 0.53 16
31 H 0.19 0.69 8.06 -52.49 -0.42 0.26 16
32 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16
33 H 0.10 1.88 8.09 -51.93 -0.42 1.46 16
34 H 0.35 8.02 3.57 45.56 0.16 8.19 16
35 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16
36 H 0.10 1.76 7.72 -51.93 -0.40 1.36 16
37 H 0.07 1.40 6.56 -51.92 -0.34 1.06 16
38 H 0.14 2.05 5.51 -52.49 -0.29 1.76 16
LS Contribution 318.75 15.07 4.80 4.80
Total: -1.00 -35.41 318.75 -7.73 -43.14
By element:
Atomic # 1 Polarization: 15.40 SS G_CDS: -5.12 Total: 10.28 kcal
Atomic # 6 Polarization: 4.43 SS G_CDS: -3.68 Total: 0.75 kcal
Atomic # 7 Polarization: -47.11 SS G_CDS: 0.78 Total: -46.33 kcal
Atomic # 8 Polarization: -26.85 SS G_CDS: -0.38 Total: -27.23 kcal
Atomic # 14 Polarization: 18.72 SS G_CDS: -4.13 Total: 14.59 kcal
Total LS contribution 4.80 Total: 4.80 kcal
Total: -35.41 -7.73 -43.14 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000329392216.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.612 kcal
(2) G-P(sol) polarization free energy of solvation -35.409 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.203 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.473 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds