Wall clock time and date at job start Tue Mar 31 2020 04:31:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.35828 * 118.69634 * 2 1
4 4 C 1.40838 * 120.55488 * 180.02562 * 3 2 1
5 5 C 1.38430 * 134.90087 * 180.02562 * 4 3 2
6 6 N 1.33886 * 107.84552 * 179.97438 * 5 4 3
7 7 H 0.97007 * 125.01999 * 179.97438 * 6 5 4
8 8 N 1.39983 * 109.96206 * 359.97438 * 6 5 4
9 9 C 1.31470 * 109.01738 * 359.97438 * 8 6 5
10 10 C 1.46666 * 134.99174 * 180.02562 * 9 8 6
11 11 C 1.47163 * 120.72456 * 359.97438 * 10 9 8
12 12 O 1.21646 * 120.00265 * 335.86320 * 11 10 9
13 13 N 1.34776 * 120.00005 * 155.86199 * 11 10 9
14 14 C 1.47584 * 134.49693 * 174.54552 * 13 11 10
15 15 C 1.53940 * 86.11959 * 155.36155 * 14 13 11
16 16 O 1.42900 * 113.74216 * 269.15746 * 15 14 13
17 17 C 1.50698 * 113.74395 * 137.95695 * 15 14 13
18 18 H 1.08002 * 119.99306 * 1.92686 * 17 15 14
19 19 C 1.37876 * 120.00204 * 181.92368 * 17 15 14
20 20 N 1.31519 * 119.99483 * 179.97438 * 19 17 15
21 21 Si 1.86797 * 120.00057 * 0.02562 * 19 17 15
22 22 H 1.48498 * 109.46913 * 269.99765 * 21 19 17
23 23 H 1.48497 * 109.47136 * 29.99740 * 21 19 17
24 24 H 1.48495 * 109.47220 * 149.99838 * 21 19 17
25 25 C 1.47815 * 134.45782 * 354.42062 * 13 11 10
26 26 C 1.38594 * 118.54706 * 180.25068 * 10 9 8
27 27 H 1.09003 * 109.47250 * 89.99927 * 1 2 3
28 28 H 1.09008 * 109.47337 * 209.99511 * 1 2 3
29 29 H 1.09003 * 109.47543 * 329.99913 * 1 2 3
30 30 H 1.08001 * 119.72328 * 0.02562 * 3 2 1
31 31 H 1.08000 * 126.07431 * 359.97438 * 5 4 3
32 32 H 1.09006 * 113.76132 * 41.06247 * 14 13 11
33 33 H 1.08998 * 113.87381 * 269.68067 * 14 13 11
34 34 H 0.96703 * 114.00170 * 178.07475 * 16 15 14
35 35 H 0.97004 * 119.99364 * 179.97438 * 20 19 17
36 36 H 1.08995 * 113.77234 * 90.37590 * 25 13 11
37 37 H 1.09009 * 113.83314 * 318.91072 * 25 13 11
38 38 H 1.08001 * 119.31496 * 179.71100 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1592 1.1915 0.0000
4 6 3.5668 1.2371 -0.0005
5 6 4.5117 2.2488 -0.0003
6 7 5.7231 1.6789 -0.0006
7 1 6.5651 2.1607 -0.0008
8 7 5.5954 0.2849 -0.0005
9 6 4.3186 -0.0284 0.0005
10 6 3.5586 -1.2828 0.0015
11 6 4.2510 -2.5813 0.0011
12 8 5.3851 -2.6659 -0.4308
13 7 3.6286 -3.6770 0.4792
14 6 3.9635 -5.1131 0.5399
15 6 3.0047 -5.1788 1.7425
16 8 3.6441 -4.9562 3.0009
17 6 2.1143 -6.3945 1.7429
18 1 2.2101 -7.1342 0.9618
19 6 1.1775 -6.5626 2.7405
20 7 0.4002 -7.6235 2.7405
21 14 1.0116 -5.2830 4.0912
22 1 1.9114 -5.6343 5.2191
23 1 1.3848 -3.9485 3.5574
24 1 -0.3933 -5.2490 4.5710
25 6 2.3373 -3.9218 1.1555
26 6 2.1742 -1.2184 -0.0030
27 1 -0.3634 0.0000 -1.0277
28 1 -0.3634 -0.8901 0.5138
29 1 -0.3634 0.8900 0.5138
30 1 1.5936 2.1115 0.0004
31 1 4.3077 3.3094 0.0001
32 1 5.0043 -5.3109 0.7965
33 1 3.6231 -5.6824 -0.3250
34 1 3.0405 -4.9674 3.7563
35 1 -0.2586 -7.7419 3.4426
36 1 1.5171 -4.1389 0.4712
37 1 2.0820 -3.1704 1.9028
38 1 1.6022 -2.1345 -0.0071
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000329392216.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:31:34
Heat of formation + Delta-G solvation = 37.356995 kcal
Electronic energy + Delta-G solvation = -24289.096568 eV
Core-core repulsion = 20713.105523 eV
Total energy + Delta-G solvation = -3575.991045 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 301.121 amu
Computer time = 1.74 seconds
Orbital eigenvalues (eV)
-42.27216 -41.35511 -39.25611 -38.29724 -36.24428 -34.54819 -33.56542 -32.29301
-31.46552 -30.16366 -27.57328 -27.20205 -27.19075 -25.22764 -22.94407 -22.01443
-21.55662 -20.01794 -19.36887 -19.13932 -18.35957 -18.16660 -17.37188 -16.88360
-16.52192 -15.85610 -15.73646 -15.66059 -15.29881 -15.17659 -14.80452 -14.54495
-14.23777 -14.08161 -13.99133 -13.88414 -13.05159 -12.99552 -12.84740 -12.66324
-12.50988 -12.44912 -12.22899 -11.92342 -11.66089 -11.31893 -11.20904 -11.07949
-10.84468 -10.45078 -9.87696 -9.67429 -8.55470 -8.41620 -6.54258 -0.64136
0.78319 1.13938 1.27179 1.29658 1.40890 1.72467 1.90475 1.95498
2.18920 2.76696 2.80069 3.16883 3.23835 3.48817 3.70727 3.82312
4.07674 4.15970 4.28557 4.36585 4.41456 4.44370 4.54977 4.60874
4.62942 4.68816 4.83892 4.88548 5.01022 5.08997 5.18849 5.29129
5.32076 5.37397 5.63876 5.90249 6.05576 6.27948 6.53242 6.59091
6.66128 6.74225 7.11433 7.15157 8.73663
Molecular weight = 301.12amu
Principal moments of inertia in cm(-1)
A = 0.018791 B = 0.004750 C = 0.004210
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1489.755664 B = 5892.824148 C = 6649.624326
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C -0.162 4.162
3 C 0.014 3.986
4 C -0.245 4.245
5 C 0.139 3.861
6 N -0.421 5.421
7 H 0.460 0.540
8 N -0.350 5.350
9 C 0.108 3.892
10 C -0.165 4.165
11 C 0.569 3.431
12 O -0.590 6.590
13 N -0.634 5.634
14 C 0.124 3.876
15 C 0.187 3.813
16 O -0.564 6.564
17 C -0.543 4.543
18 H 0.059 0.941
19 C 0.034 3.966
20 N -0.921 5.921
21 Si 0.912 3.088
22 H -0.261 1.261
23 H -0.231 1.231
24 H -0.275 1.275
25 C 0.077 3.923
26 C -0.012 4.012
27 H 0.077 0.923
28 H 0.061 0.939
29 H 0.089 0.911
30 H 0.176 0.824
31 H 0.258 0.742
32 H 0.064 0.936
33 H 0.107 0.893
34 H 0.357 0.643
35 H 0.274 0.726
36 H 0.113 0.887
37 H 0.083 0.917
38 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.116 26.002 -3.439 26.313
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C -0.164 4.164
3 C -0.006 4.006
4 C -0.255 4.255
5 C -0.020 4.020
6 N -0.122 5.122
7 H 0.308 0.692
8 N -0.177 5.177
9 C -0.049 4.049
10 C -0.172 4.172
11 C 0.363 3.637
12 O -0.473 6.473
13 N -0.367 5.367
14 C 0.002 3.998
15 C 0.146 3.854
16 O -0.375 6.375
17 C -0.581 4.581
18 H 0.077 0.923
19 C -0.167 4.167
20 N -0.558 5.558
21 Si 0.736 3.264
22 H -0.187 1.187
23 H -0.155 1.155
24 H -0.201 1.201
25 C -0.045 4.045
26 C -0.034 4.034
27 H 0.096 0.904
28 H 0.080 0.920
29 H 0.108 0.892
30 H 0.193 0.807
31 H 0.274 0.726
32 H 0.083 0.917
33 H 0.125 0.875
34 H 0.209 0.791
35 H 0.084 0.916
36 H 0.131 0.869
37 H 0.102 0.898
38 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 0.212 25.559 -4.030 25.876
hybrid contribution -0.508 -0.225 0.884 1.044
sum -0.296 25.334 -3.146 25.530
Atomic orbital electron populations
1.20805 0.88283 1.03880 1.03188 1.19406 0.98107 0.91529 1.07361
1.20635 0.90175 0.98950 0.90825 1.20076 0.96144 0.90591 1.18708
1.23775 0.83092 1.00899 0.94273 1.46562 1.09873 1.04692 1.51024
0.69224 1.77720 1.17825 0.90795 1.31394 1.21748 0.90984 0.94308
0.97846 1.19703 0.93421 0.88414 1.15617 1.18235 0.85152 0.83794
0.76545 1.90713 1.19875 1.86412 1.50279 1.50036 1.21748 1.06704
1.58238 1.23291 0.99834 0.79369 0.97351 1.20605 0.90566 0.92290
0.81947 1.86484 1.39562 1.95019 1.16459 1.21299 1.17674 1.06541
1.12588 0.92308 1.25741 0.94265 0.97139 0.99589 1.69991 1.21991
1.28930 1.34913 0.86429 0.78607 0.81172 0.80143 1.18704 1.15469
1.20089 1.24598 0.86860 0.97511 0.95506 1.21598 0.91199 1.00114
0.90474 0.90436 0.91977 0.89179 0.80651 0.72603 0.91745 0.87481
0.79121 0.91601 0.86886 0.89845 0.84667
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.52 9.92 71.24 0.71 -0.82 16
2 C -0.16 -3.48 5.82 -20.26 -0.12 -3.60 16
3 C 0.01 0.24 9.58 22.35 0.21 0.46 16
4 C -0.25 -5.39 6.34 -20.24 -0.13 -5.52 16
5 C 0.14 1.73 12.08 84.43 1.02 2.75 16
6 N -0.42 -7.90 7.18 -56.29 -0.40 -8.30 16
7 H 0.46 4.63 8.96 -213.39 -1.91 2.72 16
8 N -0.35 -12.26 12.47 -45.23 -0.56 -12.82 16
9 C 0.11 3.77 7.29 43.75 0.32 4.09 16
10 C -0.17 -6.30 5.99 -18.65 -0.11 -6.42 16
11 C 0.57 26.29 7.84 86.59 0.68 26.97 16
12 O -0.59 -31.55 17.37 -4.18 -0.07 -31.62 16
13 N -0.63 -27.92 3.58 -843.75 -3.02 -30.94 16
14 C 0.12 5.60 8.23 86.48 0.71 6.31 16
15 C 0.19 8.77 1.06 -10.88 -0.01 8.76 16
16 O -0.56 -27.41 13.35 -148.98 -1.99 -29.40 16
17 C -0.54 -28.79 9.19 25.60 0.24 -28.55 16
18 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16
19 C 0.03 1.80 5.47 84.65 0.46 2.27 16
20 N -0.92 -52.28 13.96 21.45 0.30 -51.98 16
21 Si 0.91 38.06 24.31 68.60 1.67 39.73 16
22 H -0.26 -10.65 7.05 99.48 0.70 -9.94 16
23 H -0.23 -8.70 5.16 99.48 0.51 -8.19 16
24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16
25 C 0.08 3.12 4.77 86.44 0.41 3.53 16
26 C -0.01 -0.35 8.39 22.52 0.19 -0.16 16
27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
28 H 0.06 0.99 8.06 -2.38 -0.02 0.97 16
29 H 0.09 0.85 8.04 -2.39 -0.02 0.83 16
30 H 0.18 1.22 8.04 -2.91 -0.02 1.20 16
31 H 0.26 -0.51 8.06 -2.91 -0.02 -0.53 16
32 H 0.06 3.02 8.14 -2.38 -0.02 3.00 16
33 H 0.11 4.49 8.09 -2.39 -0.02 4.47 16
34 H 0.36 15.96 3.57 -74.06 -0.26 15.69 16
35 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16
36 H 0.11 4.12 7.72 -2.39 -0.02 4.10 16
37 H 0.08 3.16 6.56 -2.38 -0.02 3.14 16
38 H 0.14 3.93 5.51 -2.91 -0.02 3.91 16
Total: -1.00 -85.56 318.75 -0.75 -86.31
By element:
Atomic # 1 Polarization: 30.20 SS G_CDS: -1.24 Total: 28.96 kcal
Atomic # 6 Polarization: 5.48 SS G_CDS: 4.58 Total: 10.06 kcal
Atomic # 7 Polarization: -100.36 SS G_CDS: -3.69 Total: -104.04 kcal
Atomic # 8 Polarization: -58.96 SS G_CDS: -2.06 Total: -61.02 kcal
Atomic # 14 Polarization: 38.06 SS G_CDS: 1.67 Total: 39.73 kcal
Total: -85.56 -0.75 -86.31 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000329392216.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.662 kcal
(2) G-P(sol) polarization free energy of solvation -85.560 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.102 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.305 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.357 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.75 seconds