Wall clock time and date at job start Tue Mar 31 2020 04:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37952 * 119.84591 * 179.67802 * 4 3 2 6 6 C 1.38365 * 120.14802 * 0.61944 * 5 4 3 7 7 C 1.50696 * 119.84884 * 179.69659 * 6 5 4 8 8 C 1.52998 * 109.47235 * 269.98146 * 7 6 5 9 9 C 1.50707 * 109.47241 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99804 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00302 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00509 * 180.02562 * 11 9 8 13 13 C 1.50692 * 109.47493 * 180.02562 * 12 11 9 14 14 O 1.21292 * 120.00130 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00015 * 179.97438 * 13 12 11 16 16 C 1.37095 * 119.99804 * 179.97438 * 15 13 12 17 17 H 1.08002 * 120.00508 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99916 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00160 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99778 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47124 * 90.00366 * 20 18 16 22 22 H 1.48504 * 109.47044 * 209.99840 * 20 18 16 23 23 H 1.48492 * 109.47377 * 329.99976 * 20 18 16 24 24 C 1.38366 * 120.30592 * 359.68013 * 6 5 4 25 25 C 1.37947 * 120.14940 * 359.97438 * 24 6 5 26 26 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.92876 * 180.29624 * 5 4 3 28 28 H 1.09004 * 109.46695 * 29.98272 * 7 6 5 29 29 H 1.08997 * 109.47414 * 149.97949 * 7 6 5 30 30 H 1.08996 * 109.47541 * 299.99980 * 8 7 6 31 31 H 1.09002 * 109.47189 * 60.00332 * 8 7 6 32 32 H 0.97009 * 119.99682 * 0.02562 * 11 9 8 33 33 H 1.09004 * 109.46481 * 300.00233 * 12 11 9 34 34 H 1.09001 * 109.47332 * 59.99294 * 12 11 9 35 35 H 0.96995 * 119.99917 * 0.02562 * 15 13 12 36 36 H 0.97001 * 119.99774 * 180.02562 * 19 18 16 37 37 H 1.07993 * 119.92703 * 180.02562 * 24 6 5 38 38 H 1.08003 * 120.07687 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1976 1.1841 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 6 7.3542 1.4246 -0.2361 9 6 8.8613 1.4249 -0.2355 10 8 9.4677 0.3888 -0.0633 11 7 9.5350 2.5762 -0.4271 12 6 11.0000 2.5765 -0.4270 13 6 11.5022 3.9781 -0.6597 14 8 10.7139 4.8876 -0.8103 15 7 12.8273 4.2213 -0.6994 16 6 13.2841 5.4963 -0.9117 17 1 12.5822 6.3060 -1.0466 18 6 14.6502 5.7470 -0.9532 19 7 15.0881 6.9692 -1.1561 20 14 15.8642 4.3464 -0.7204 21 1 16.1861 3.7460 -2.0400 22 1 17.1074 4.8674 -0.0972 23 1 15.2643 3.3127 0.1608 24 6 4.6489 -0.1954 -1.1838 25 6 3.2694 -0.1976 -1.1909 26 1 2.7328 0.3633 2.1140 27 1 5.1923 0.3506 2.1046 28 1 7.2076 -0.3594 0.9625 29 1 7.2078 -0.6511 -0.7934 30 1 6.9909 1.7856 -1.1983 31 1 6.9908 2.0773 0.5576 32 1 9.0499 3.4049 -0.5652 33 1 11.3632 2.2158 0.5354 34 1 11.3635 1.9234 -1.2204 35 1 13.4576 3.4941 -0.5786 36 1 16.0418 7.1441 -1.1854 37 1 5.1926 -0.3483 -2.1042 38 1 2.7332 -0.3517 -2.1157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344182727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:28 Heat of formation + Delta-G solvation = -28.147301 kcal Electronic energy + Delta-G solvation = -21802.900291 eV Core-core repulsion = 18224.068766 eV Total energy + Delta-G solvation = -3578.831525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.21340 -39.59867 -38.36372 -36.94535 -34.65653 -34.28782 -33.79826 -31.85211 -31.55829 -30.64937 -28.07945 -25.58032 -24.13509 -23.24448 -22.05581 -20.22922 -19.65316 -19.36250 -18.66667 -17.33839 -16.34033 -15.92026 -15.86566 -15.58556 -15.27196 -14.95588 -14.80953 -14.54665 -14.45290 -13.98367 -13.89644 -13.40214 -13.29449 -13.18264 -12.99343 -12.93197 -12.52984 -12.24069 -12.10201 -12.04845 -11.70758 -11.65669 -11.27567 -11.19211 -10.68218 -10.10681 -9.91241 -9.74283 -9.50102 -9.16418 -8.96310 -8.82572 -8.34959 -6.44826 -3.97669 0.30386 0.87397 2.26658 2.50693 2.67499 2.95880 3.00598 3.08932 3.20877 3.44724 3.46683 3.51139 3.99671 4.33709 4.34219 4.41475 4.50889 4.72494 4.81402 4.87667 5.02233 5.03410 5.09937 5.27049 5.39041 5.43819 5.61339 5.63400 5.72453 5.75715 5.76838 5.82748 5.85681 6.14529 6.35325 6.49614 7.07585 7.39461 7.65556 7.95796 8.28199 8.41251 8.77409 9.25356 9.58497 10.67232 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.040335 B = 0.001984 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.012326 B =14106.106061 C =14482.119960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.256 3.744 3 C -0.039 4.039 4 C -0.067 4.067 5 C -0.117 4.117 6 C -0.047 4.047 7 C -0.071 4.071 8 C -0.134 4.134 9 C 0.511 3.489 10 O -0.551 6.551 11 N -0.708 5.708 12 C 0.106 3.894 13 C 0.436 3.564 14 O -0.579 6.579 15 N -0.575 5.575 16 C -0.311 4.311 17 H 0.122 0.878 18 C 0.046 3.954 19 N -0.873 5.873 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.267 1.267 24 C -0.117 4.117 25 C -0.067 4.067 26 H 0.132 0.868 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.413 0.587 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.374 0.626 36 H 0.276 0.724 37 H 0.135 0.865 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.161 -15.955 2.629 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.059 4.059 3 C -0.042 4.042 4 C -0.087 4.087 5 C -0.135 4.135 6 C -0.048 4.048 7 C -0.109 4.109 8 C -0.174 4.174 9 C 0.297 3.703 10 O -0.430 6.430 11 N -0.362 5.362 12 C -0.022 4.022 13 C 0.222 3.778 14 O -0.464 6.464 15 N -0.213 5.213 16 C -0.440 4.440 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.512 5.512 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.192 1.192 24 C -0.135 4.135 25 C -0.087 4.087 26 H 0.150 0.850 27 H 0.153 0.847 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.251 0.749 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.208 0.792 36 H 0.087 0.913 37 H 0.153 0.847 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.804 -15.890 2.620 24.757 hybrid contribution 1.389 -0.459 0.092 1.465 sum -17.415 -16.349 2.712 24.040 Atomic orbital electron populations 1.81268 1.12152 1.08973 1.07319 1.25773 0.92727 0.93640 0.93786 1.16007 0.84200 1.08471 0.95553 1.21185 0.94315 0.96586 0.96653 1.21076 0.93406 1.00494 0.98494 1.20243 0.96213 0.95255 0.93122 1.20444 0.89202 0.96225 1.05008 1.21623 0.92031 0.98739 1.05047 1.20580 0.90045 0.83296 0.76363 1.90694 1.70523 1.31859 1.49923 1.45745 1.06796 1.11301 1.72377 1.20973 0.81266 0.96854 1.03128 1.19648 0.83317 0.89540 0.85258 1.90541 1.54700 1.45677 1.55472 1.42129 1.05346 1.10064 1.63758 1.19443 0.92855 0.84741 1.46949 0.86068 1.25072 0.96984 0.96744 0.97078 1.69617 1.15387 1.18980 1.47204 0.86669 0.81764 0.81890 0.79146 1.19382 1.19952 1.19241 1.21073 0.93407 1.00577 0.98411 1.21185 0.94314 0.96621 0.96622 0.84976 0.84665 0.89552 0.89553 0.88423 0.88434 0.74911 0.89748 0.89730 0.79242 0.91345 0.84666 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.68 18.54 41.83 0.78 -3.91 16 2 C 0.26 2.19 15.33 -22.47 -0.34 1.85 16 3 C -0.04 -0.25 5.73 -106.93 -0.61 -0.87 16 4 C -0.07 -0.37 9.76 -39.17 -0.38 -0.75 16 5 C -0.12 -0.63 9.68 -39.64 -0.38 -1.01 16 6 C -0.05 -0.28 5.14 -104.53 -0.54 -0.82 16 7 C -0.07 -0.50 4.63 -27.89 -0.13 -0.63 16 8 C -0.13 -1.06 5.68 -27.88 -0.16 -1.22 16 9 C 0.51 6.37 7.83 -10.99 -0.09 6.28 16 10 O -0.55 -8.56 15.98 5.56 0.09 -8.47 16 11 N -0.71 -9.94 5.53 -61.48 -0.34 -10.28 16 12 C 0.11 1.69 6.15 -5.20 -0.03 1.66 16 13 C 0.44 9.16 7.85 -10.99 -0.09 9.07 16 14 O -0.58 -14.06 15.24 5.55 0.08 -13.97 16 15 N -0.58 -12.93 5.09 -10.96 -0.06 -12.99 16 16 C -0.31 -8.38 10.16 -14.93 -0.15 -8.53 16 17 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 18 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 19 N -0.87 -24.48 13.96 55.50 0.77 -23.71 16 20 Si 0.88 18.53 27.74 -169.99 -4.71 13.81 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.27 -5.13 6.52 56.52 0.37 -4.76 16 24 C -0.12 -0.63 9.68 -39.64 -0.38 -1.01 16 25 C -0.07 -0.37 9.76 -39.17 -0.38 -0.75 16 26 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 27 H 0.14 0.55 8.06 -52.48 -0.42 0.12 16 28 H 0.09 0.65 8.04 -51.93 -0.42 0.24 16 29 H 0.09 0.65 8.04 -51.93 -0.42 0.24 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.41 5.71 7.44 -40.82 -0.30 5.41 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.37 7.40 5.76 -40.82 -0.24 7.16 16 36 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -33.24 345.45 -6.26 -39.50 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -4.31 Total: 10.44 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -3.77 Total: 4.37 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 1.15 Total: -50.88 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.17 Total: -22.44 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -4.71 Total: 13.81 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.24 -6.26 -39.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344182727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.353 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds