Wall clock time and date at job start Tue Mar 31 2020 04:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48496 * 109.46930 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46717 * 299.99873 * 3 2 1 6 6 H 1.48499 * 109.47285 * 59.99711 * 3 2 1 7 7 C 1.37877 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99745 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00182 * 0.02562 * 7 2 1 10 10 O 1.42901 * 113.28082 * 46.92958 * 9 7 2 11 11 C 1.53499 * 114.20505 * 179.97438 * 9 7 2 12 12 N 1.47072 * 87.98256 * 139.85374 * 11 9 7 13 13 C 1.34777 * 136.05745 * 152.84894 * 12 11 9 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27198 * 13 12 11 16 16 N 1.46491 * 109.46957 * 179.72354 * 15 13 12 17 17 C 1.36045 * 126.34879 * 265.02458 * 16 15 13 18 18 N 1.30113 * 110.09839 * 180.02562 * 17 16 15 19 19 C 1.35777 * 109.64641 * 359.97438 * 18 17 16 20 20 C 1.39742 * 133.60375 * 180.02562 * 19 18 17 21 21 C 1.36613 * 119.88378 * 179.22622 * 20 19 18 22 22 C 1.38775 * 120.67033 * 0.63461 * 21 20 19 23 23 C 1.37860 * 120.44937 * 359.59352 * 22 21 20 24 24 C 1.38055 * 126.35115 * 84.71260 * 16 15 13 25 25 C 1.47067 * 87.88518 * 333.09734 * 12 11 9 26 26 H 0.97003 * 119.99686 * 0.02562 * 1 2 3 27 27 H 0.96703 * 114.00237 * 313.06216 * 10 9 7 28 28 H 1.08991 * 113.46673 * 25.07174 * 11 9 7 29 29 H 1.08997 * 113.46614 * 254.62641 * 11 9 7 30 30 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 31 31 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 32 32 H 1.08003 * 124.94778 * 0.02562 * 17 16 15 33 33 H 1.08002 * 120.05390 * 359.95060 * 20 19 18 34 34 H 1.08000 * 119.65987 * 180.22870 * 21 20 19 35 35 H 1.08001 * 119.77438 * 179.61967 * 22 21 20 36 36 H 1.07993 * 120.15051 * 180.02562 * 23 22 21 37 37 H 1.09000 * 113.46426 * 141.67517 * 25 12 11 38 38 H 1.08998 * 113.47159 * 272.12208 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.1927 -2.5403 -0.9588 11 6 2.1488 -3.7442 0.0005 12 7 1.2072 -4.3594 0.9482 13 6 0.8310 -5.6139 1.2661 14 8 1.3262 -6.5597 0.6906 15 6 -0.2099 -5.8411 2.3320 16 7 -0.4464 -7.2787 2.4849 17 6 -1.4261 -8.0035 1.8803 18 7 -1.3458 -9.2513 2.2401 19 6 -0.3078 -9.4125 3.1004 20 6 0.2194 -10.5146 3.7788 21 6 1.3108 -10.3588 4.5856 22 6 1.8970 -9.1118 4.7507 23 6 1.3910 -8.0097 4.0950 24 6 0.2873 -8.1502 3.2647 25 6 0.8522 -3.0029 1.3918 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3711 -1.7546 -0.9565 28 1 3.1372 -3.5666 0.4242 29 1 2.1876 -4.2513 -0.9635 30 1 0.1420 -5.4281 3.2774 31 1 -1.1386 -5.3487 2.0437 32 1 -2.1631 -7.6017 1.2008 33 1 -0.2280 -11.4899 3.6564 34 1 1.7175 -11.2137 5.1054 35 1 2.7556 -9.0041 5.3968 36 1 1.8512 -7.0417 4.2266 37 1 -0.2091 -2.8808 1.6082 38 1 1.4918 -2.6258 2.1898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356868574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:53 Heat of formation + Delta-G solvation = 39.335725 kcal Electronic energy + Delta-G solvation = -23750.469627 eV Core-core repulsion = 20174.564386 eV Total energy + Delta-G solvation = -3575.905241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12114 -39.77142 -37.80275 -37.13072 -34.18646 -34.06758 -32.32122 -30.72754 -29.39348 -29.28398 -27.28007 -25.34580 -25.12099 -23.24322 -22.11666 -21.10593 -20.16310 -18.60573 -17.67263 -17.25070 -17.19547 -16.66942 -15.80204 -15.54937 -15.21605 -15.18304 -14.57625 -14.31612 -14.00106 -13.95035 -13.60038 -13.41509 -12.94683 -12.67987 -12.37335 -12.08060 -11.91052 -11.75120 -11.69499 -11.49143 -11.18786 -11.14263 -10.64417 -10.57552 -10.39987 -9.93084 -9.81765 -9.39405 -8.91514 -8.59376 -8.31543 -8.11341 -8.04827 -6.53359 -4.63873 0.98285 1.53847 2.43859 2.82869 2.85339 3.05260 3.15646 3.18901 3.39349 3.91925 4.07912 4.29703 4.55519 4.60214 4.64193 4.75219 4.95854 4.99793 5.05825 5.40987 5.43140 5.44358 5.54343 5.70240 5.73181 5.97916 6.11710 6.21631 6.28919 6.39132 6.44568 6.49532 6.50133 6.54360 6.87043 6.94531 7.10279 7.50502 7.66183 7.89245 8.23059 8.40121 8.44045 9.08204 9.34222 10.53487 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.032245 B = 0.003147 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.145068 B = 8895.989313 C = 9261.572608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.242 3.758 10 O -0.572 6.572 11 C 0.109 3.891 12 N -0.632 5.632 13 C 0.515 3.485 14 O -0.545 6.545 15 C 0.099 3.901 16 N -0.473 5.473 17 C 0.274 3.726 18 N -0.500 5.500 19 C 0.045 3.955 20 C -0.067 4.067 21 C -0.132 4.132 22 C -0.107 4.107 23 C -0.104 4.104 24 C 0.059 3.941 25 C 0.068 3.932 26 H 0.274 0.726 27 H 0.395 0.605 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.213 0.787 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.851 -9.139 9.282 13.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.092 0.908 9 C 0.200 3.800 10 O -0.385 6.385 11 C -0.013 4.013 12 N -0.366 5.366 13 C 0.302 3.698 14 O -0.423 6.423 15 C -0.027 4.027 16 N -0.162 5.162 17 C -0.012 4.012 18 N -0.219 5.219 19 C -0.073 4.073 20 C -0.086 4.086 21 C -0.152 4.152 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.050 4.050 25 C -0.055 4.055 26 H 0.085 0.915 27 H 0.252 0.748 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.229 0.771 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.085 0.915 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.079 -10.827 8.622 13.882 hybrid contribution 0.618 2.315 0.359 2.422 sum -0.461 -8.512 8.981 12.382 Atomic orbital electron populations 1.69257 1.06223 1.28274 1.50086 1.25084 0.95051 1.00033 0.92849 0.86240 0.80089 0.82038 0.77966 1.19370 1.20534 1.20602 1.21452 0.94009 0.89611 1.52183 0.90799 1.19477 0.85434 0.91084 0.84047 1.86051 1.45156 1.48429 1.58863 1.23387 0.93774 0.91977 0.92186 1.49721 1.42135 1.04382 1.40314 1.20079 0.83825 0.81780 0.84118 1.90735 1.57188 1.40637 1.53764 1.21556 1.01475 0.78948 1.00755 1.44936 1.25915 1.07693 1.37697 1.25338 0.92456 0.86666 0.96704 1.70450 1.20348 1.15770 1.15306 1.19047 0.95509 0.92868 0.99849 1.19975 0.95970 0.96662 0.96032 1.20594 0.96709 0.97525 1.00402 1.20834 0.99991 0.92012 0.99833 1.19969 0.94863 0.99736 0.97904 1.18844 0.97066 0.90809 0.98239 1.24284 1.00591 0.77516 1.03142 0.91517 0.74846 0.89465 0.91401 0.86692 0.85717 0.77094 0.85585 0.85579 0.85474 0.86354 0.91503 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.35 11.01 55.43 0.61 -20.74 16 2 C 0.07 1.70 5.39 -17.82 -0.10 1.60 16 3 Si 0.91 18.42 29.54 -169.99 -5.02 13.40 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.53 -12.55 8.70 -34.44 -0.30 -12.85 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.24 5.36 1.57 -91.39 -0.14 5.22 16 10 O -0.57 -13.80 13.53 -35.23 -0.48 -14.27 16 11 C 0.11 2.22 8.03 -8.50 -0.07 2.15 16 12 N -0.63 -12.03 3.69 -185.36 -0.68 -12.71 16 13 C 0.52 9.49 8.15 -10.98 -0.09 9.40 16 14 O -0.54 -12.18 17.21 5.55 0.10 -12.08 16 15 C 0.10 1.35 6.47 -5.20 -0.03 1.31 16 16 N -0.47 -7.08 2.29 -117.08 -0.27 -7.35 16 17 C 0.27 3.94 12.49 -89.77 -1.12 2.82 16 18 N -0.50 -8.18 11.27 -12.04 -0.14 -8.31 16 19 C 0.05 0.73 7.23 -84.70 -0.61 0.11 16 20 C -0.07 -0.89 10.05 -39.61 -0.40 -1.28 16 21 C -0.13 -1.48 9.96 -39.97 -0.40 -1.88 16 22 C -0.11 -1.24 10.03 -39.52 -0.40 -1.63 16 23 C -0.10 -1.43 10.05 -39.50 -0.40 -1.82 16 24 C 0.06 0.93 6.87 -83.99 -0.58 0.36 16 25 C 0.07 1.28 7.83 -8.63 -0.07 1.21 16 26 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 27 H 0.39 9.64 6.33 45.56 0.29 9.93 16 28 H 0.09 1.63 8.10 -51.93 -0.42 1.21 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.12 1.39 8.13 -51.93 -0.42 0.96 16 32 H 0.21 2.19 8.06 -52.48 -0.42 1.76 16 33 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -30.34 334.19 -9.45 -39.78 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -3.90 Total: 12.54 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -4.70 Total: 4.71 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.48 Total: -49.11 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.38 Total: -26.36 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.34 -9.45 -39.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356868574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.120 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds