Wall clock time and date at job start Tue Mar 31 2020 04:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48496 * 109.46930 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46717 * 299.99873 * 3 2 1 6 6 H 1.48499 * 109.47285 * 59.99711 * 3 2 1 7 7 C 1.37877 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99745 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00182 * 0.02562 * 7 2 1 10 10 O 1.42901 * 113.28082 * 46.92958 * 9 7 2 11 11 C 1.53499 * 114.20505 * 179.97438 * 9 7 2 12 12 N 1.47072 * 87.98256 * 139.85374 * 11 9 7 13 13 C 1.34777 * 136.05745 * 152.84894 * 12 11 9 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27198 * 13 12 11 16 16 N 1.46491 * 109.46957 * 179.72354 * 15 13 12 17 17 C 1.36045 * 126.34879 * 265.02458 * 16 15 13 18 18 N 1.30113 * 110.09839 * 180.02562 * 17 16 15 19 19 C 1.35777 * 109.64641 * 359.97438 * 18 17 16 20 20 C 1.39742 * 133.60375 * 180.02562 * 19 18 17 21 21 C 1.36613 * 119.88378 * 179.22622 * 20 19 18 22 22 C 1.38775 * 120.67033 * 0.63461 * 21 20 19 23 23 C 1.37860 * 120.44937 * 359.59352 * 22 21 20 24 24 C 1.38055 * 126.35115 * 84.71260 * 16 15 13 25 25 C 1.47067 * 87.88518 * 333.09734 * 12 11 9 26 26 H 0.97003 * 119.99686 * 0.02562 * 1 2 3 27 27 H 0.96703 * 114.00237 * 313.06216 * 10 9 7 28 28 H 1.08991 * 113.46673 * 25.07174 * 11 9 7 29 29 H 1.08997 * 113.46614 * 254.62641 * 11 9 7 30 30 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 31 31 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 32 32 H 1.08003 * 124.94778 * 0.02562 * 17 16 15 33 33 H 1.08002 * 120.05390 * 359.95060 * 20 19 18 34 34 H 1.08000 * 119.65987 * 180.22870 * 21 20 19 35 35 H 1.08001 * 119.77438 * 179.61967 * 22 21 20 36 36 H 1.07993 * 120.15051 * 180.02562 * 23 22 21 37 37 H 1.09000 * 113.46426 * 141.67517 * 25 12 11 38 38 H 1.08998 * 113.47159 * 272.12208 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.1927 -2.5403 -0.9588 11 6 2.1488 -3.7442 0.0005 12 7 1.2072 -4.3594 0.9482 13 6 0.8310 -5.6139 1.2661 14 8 1.3262 -6.5597 0.6906 15 6 -0.2099 -5.8411 2.3320 16 7 -0.4464 -7.2787 2.4849 17 6 -1.4261 -8.0035 1.8803 18 7 -1.3458 -9.2513 2.2401 19 6 -0.3078 -9.4125 3.1004 20 6 0.2194 -10.5146 3.7788 21 6 1.3108 -10.3588 4.5856 22 6 1.8970 -9.1118 4.7507 23 6 1.3910 -8.0097 4.0950 24 6 0.2873 -8.1502 3.2647 25 6 0.8522 -3.0029 1.3918 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3711 -1.7546 -0.9565 28 1 3.1372 -3.5666 0.4242 29 1 2.1876 -4.2513 -0.9635 30 1 0.1420 -5.4281 3.2774 31 1 -1.1386 -5.3487 2.0437 32 1 -2.1631 -7.6017 1.2008 33 1 -0.2280 -11.4899 3.6564 34 1 1.7175 -11.2137 5.1054 35 1 2.7556 -9.0041 5.3968 36 1 1.8512 -7.0417 4.2266 37 1 -0.2091 -2.8808 1.6082 38 1 1.4918 -2.6258 2.1898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356868574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:52 Heat of formation + Delta-G solvation = 20.411416 kcal Electronic energy + Delta-G solvation = -23751.290247 eV Core-core repulsion = 20174.564386 eV Total energy + Delta-G solvation = -3576.725861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = -0.56 seconds Orbital eigenvalues (eV) -43.17441 -41.31659 -39.30096 -38.17169 -35.92885 -35.20640 -34.12558 -31.82114 -30.79152 -30.28805 -28.64525 -26.95046 -26.67083 -24.23190 -23.14726 -22.45154 -21.49453 -20.10547 -19.36373 -18.36319 -18.25257 -18.10791 -17.17140 -16.75260 -16.73033 -16.58757 -15.95347 -15.79914 -15.18155 -15.01649 -14.88298 -14.61436 -14.43973 -14.21057 -13.84760 -13.43155 -13.36853 -12.87004 -12.83082 -12.78296 -12.72966 -12.44220 -12.24140 -12.15915 -11.84408 -11.36126 -11.01923 -10.97909 -10.66957 -10.26733 -9.68364 -9.34321 -9.11309 -8.28997 -6.45133 -0.01410 0.53503 1.32957 1.41165 1.45704 1.52248 1.61004 1.78739 2.03625 2.40394 2.90959 2.93516 3.28538 3.31742 3.59311 3.63165 3.74462 3.99242 4.06632 4.12008 4.17870 4.39956 4.46891 4.48767 4.58125 4.60994 4.74332 4.80786 4.84963 4.91522 5.17206 5.23303 5.44580 5.55599 5.56308 5.72756 5.90074 5.94489 6.07150 6.60662 6.75525 6.81679 6.95685 7.28964 7.48982 8.77130 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.032245 B = 0.003147 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.145068 B = 8895.989313 C = 9261.572608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.036 3.964 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.219 3.781 10 O -0.587 6.587 11 C 0.106 3.894 12 N -0.630 5.630 13 C 0.513 3.487 14 O -0.589 6.589 15 C 0.109 3.891 16 N -0.479 5.479 17 C 0.266 3.734 18 N -0.529 5.529 19 C 0.011 3.989 20 C -0.083 4.083 21 C -0.124 4.124 22 C -0.101 4.101 23 C -0.124 4.124 24 C 0.034 3.966 25 C 0.085 3.915 26 H 0.277 0.723 27 H 0.390 0.610 28 H 0.103 0.897 29 H 0.049 0.951 30 H 0.142 0.858 31 H 0.154 0.846 32 H 0.243 0.757 33 H 0.138 0.862 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.321 -8.973 11.136 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.165 4.165 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.590 4.590 8 H 0.091 0.909 9 C 0.178 3.822 10 O -0.400 6.400 11 C -0.017 4.017 12 N -0.364 5.364 13 C 0.302 3.698 14 O -0.471 6.471 15 C -0.016 4.016 16 N -0.168 5.168 17 C -0.019 4.019 18 N -0.249 5.249 19 C -0.106 4.106 20 C -0.103 4.103 21 C -0.143 4.143 22 C -0.120 4.120 23 C -0.145 4.145 24 C -0.074 4.074 25 C -0.037 4.037 26 H 0.087 0.913 27 H 0.247 0.753 28 H 0.121 0.879 29 H 0.067 0.933 30 H 0.159 0.841 31 H 0.172 0.828 32 H 0.259 0.741 33 H 0.156 0.844 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.550 -10.668 10.499 14.978 hybrid contribution 0.508 2.191 -0.239 2.262 sum -0.042 -8.477 10.260 13.309 Atomic orbital electron populations 1.69305 1.06988 1.28926 1.50288 1.25696 0.95752 1.02451 0.92618 0.85359 0.78962 0.78760 0.77657 1.19285 1.21032 1.20113 1.21663 0.94153 0.90530 1.52634 0.90943 1.19747 0.85523 0.91388 0.85591 1.86038 1.45660 1.48209 1.60078 1.23379 0.94726 0.91438 0.92114 1.49721 1.41805 1.04893 1.39935 1.20927 0.83914 0.80621 0.84307 1.90714 1.58909 1.41801 1.55646 1.21655 1.01067 0.78878 1.00042 1.45041 1.25986 1.08035 1.37774 1.25997 0.92839 0.86421 0.96656 1.70401 1.21262 1.16953 1.16254 1.19543 0.96131 0.94120 1.00831 1.20330 0.96864 0.96669 0.96428 1.21042 0.95441 0.98697 0.99161 1.21310 1.00274 0.91416 0.98984 1.20286 0.94805 1.01039 0.98379 1.19237 0.97987 0.91046 0.99158 1.24057 1.01424 0.76811 1.01417 0.91305 0.75344 0.87871 0.93286 0.84062 0.82816 0.74109 0.84422 0.81980 0.82191 0.85547 0.90568 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -42.85 11.01 21.45 0.24 -42.62 16 2 C 0.04 1.64 5.39 84.65 0.46 2.09 16 3 Si 0.97 37.07 29.54 68.60 2.03 39.10 16 4 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.28 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.55 -25.59 8.70 25.60 0.22 -25.37 16 8 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.22 9.62 1.57 -11.29 -0.02 9.60 16 10 O -0.59 -28.47 13.53 -148.98 -2.02 -30.49 16 11 C 0.11 4.32 8.03 83.18 0.67 4.99 16 12 N -0.63 -23.36 3.69 -859.21 -3.17 -26.53 16 13 C 0.51 18.42 8.15 87.66 0.71 19.14 16 14 O -0.59 -26.46 17.21 -3.04 -0.05 -26.52 16 15 C 0.11 2.76 6.47 85.64 0.55 3.31 16 16 N -0.48 -13.90 2.29 -524.33 -1.20 -15.11 16 17 C 0.27 7.55 12.49 180.05 2.25 9.80 16 18 N -0.53 -17.44 11.27 -192.02 -2.16 -19.61 16 19 C 0.01 0.35 7.23 39.45 0.29 0.64 16 20 C -0.08 -2.14 10.05 22.25 0.22 -1.91 16 21 C -0.12 -2.46 9.96 22.02 0.22 -2.24 16 22 C -0.10 -2.06 10.03 22.31 0.22 -1.84 16 23 C -0.12 -3.24 10.05 22.32 0.22 -3.01 16 24 C 0.03 1.05 6.87 38.86 0.27 1.32 16 25 C 0.09 3.09 7.83 83.10 0.65 3.74 16 26 H 0.28 12.30 8.31 -92.71 -0.77 11.53 16 27 H 0.39 19.21 6.33 -74.06 -0.47 18.74 16 28 H 0.10 3.80 8.10 -2.39 -0.02 3.78 16 29 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.14 2.84 8.14 -2.38 -0.02 2.82 16 31 H 0.15 2.99 8.13 -2.39 -0.02 2.97 16 32 H 0.24 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 37 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.10 3.34 8.10 -2.39 -0.02 3.32 16 Total: -1.00 -66.22 334.19 1.22 -65.00 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.63 Total: 36.52 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 6.94 Total: 20.25 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -6.30 Total: -103.86 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -2.07 Total: -57.00 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -66.22 1.22 -65.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356868574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.411 kcal (2) G-P(sol) polarization free energy of solvation -66.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.56 seconds