Wall clock time and date at job start Tue Mar 31 2020 04:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37706 * 120.15465 * 2 1 4 4 C 1.38844 * 120.81785 * 179.70802 * 3 2 1 5 5 C 1.37796 * 120.56686 * 0.24242 * 4 3 2 6 6 C 1.39299 * 119.51749 * 0.03025 * 5 4 3 7 7 C 1.39595 * 120.15669 * 180.24723 * 2 1 3 8 8 N 1.35660 * 121.65776 * 359.97438 * 7 2 1 9 9 C 1.29843 * 121.61616 * 180.31739 * 8 7 2 10 10 N 1.35861 * 123.37182 * 0.02562 * 9 8 7 11 11 C 1.46499 * 119.69216 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47277 * 90.00118 * 11 10 9 13 13 O 1.21297 * 119.99714 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00242 * 179.97438 * 12 11 10 15 15 C 1.46500 * 119.99914 * 0.02562 * 14 12 11 16 16 C 1.37097 * 120.00174 * 179.97438 * 14 12 11 17 17 H 1.08007 * 119.99618 * 24.39474 * 16 14 12 18 18 C 1.38949 * 119.99998 * 204.39612 * 16 14 12 19 19 N 1.31405 * 119.99892 * 12.64443 * 18 16 14 20 20 Si 1.86799 * 119.99822 * 192.64569 * 18 16 14 21 21 H 1.48501 * 109.47433 * 89.99896 * 20 18 16 22 22 H 1.48494 * 109.47122 * 210.00036 * 20 18 16 23 23 H 1.48509 * 109.47183 * 330.00081 * 20 18 16 24 24 C 1.35341 * 120.60968 * 359.97438 * 10 9 8 25 25 O 1.21723 * 121.30103 * 180.02562 * 24 10 9 26 26 H 1.08994 * 109.47554 * 89.99875 * 1 2 3 27 27 H 1.09000 * 109.47527 * 210.00350 * 1 2 3 28 28 H 1.09006 * 109.47118 * 329.99913 * 1 2 3 29 29 H 1.07998 * 119.59210 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.71224 * 180.27649 * 4 3 2 31 31 H 1.08006 * 120.24423 * 180.02562 * 5 4 3 32 32 H 1.07997 * 118.30894 * 180.02562 * 9 8 7 33 33 H 1.09004 * 109.47117 * 210.00093 * 11 10 9 34 34 H 1.08995 * 109.47245 * 329.99962 * 11 10 9 35 35 H 1.08999 * 109.47081 * 85.86299 * 15 14 12 36 36 H 1.09002 * 109.46998 * 205.86418 * 15 14 12 37 37 H 1.09003 * 109.46780 * 325.86037 * 15 14 12 38 38 H 0.97008 * 119.99409 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1907 0.0000 4 6 3.5871 1.2068 0.0061 5 6 4.3015 0.0285 0.0072 6 6 3.6209 -1.1868 0.0016 7 6 2.2083 -1.2070 -0.0052 8 7 1.5675 -2.4027 -0.0099 9 6 2.2206 -3.5250 -0.0086 10 7 3.5771 -3.6002 -0.0021 11 6 4.2312 -4.9111 -0.0017 12 6 4.4625 -5.3575 -1.4223 13 8 4.1147 -4.6504 -2.3445 14 7 5.0558 -6.5424 -1.6683 15 6 5.4754 -7.3966 -0.5545 16 6 5.2657 -6.9488 -2.9607 17 1 5.3363 -6.2171 -3.7521 18 6 5.3877 -8.3018 -3.2524 19 7 5.0591 -9.2003 -2.3516 20 14 6.0187 -8.8434 -4.9251 21 1 7.4972 -8.9746 -4.8777 22 1 5.4167 -10.1534 -5.2808 23 1 5.6439 -7.8327 -5.9466 24 6 4.3297 -2.4753 0.0030 25 8 5.5458 -2.5280 0.0084 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 1.6546 2.1236 -0.0004 30 1 4.1115 2.1509 0.0105 31 1 5.3814 0.0471 0.0124 32 1 1.6564 -4.4458 -0.0129 33 1 5.1873 -4.8399 0.5170 34 1 3.5946 -5.6346 0.5075 35 1 4.6370 -8.0161 -0.2359 36 1 6.2976 -8.0356 -0.8765 37 1 5.8037 -6.7736 0.2775 38 1 5.1446 -10.1449 -2.5552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357532905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:21 Heat of formation + Delta-G solvation = -6.709932 kcal Electronic energy + Delta-G solvation = -24038.259191 eV Core-core repulsion = 20460.357261 eV Total energy + Delta-G solvation = -3577.901930 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.46384 -39.02688 -38.05447 -37.21479 -34.88841 -33.95129 -32.87196 -31.76793 -30.16065 -28.37804 -26.98447 -26.27195 -24.63039 -24.41867 -23.46128 -20.97162 -19.61021 -18.70445 -18.30498 -17.11492 -16.84931 -16.48103 -15.36475 -15.29749 -15.08352 -14.85223 -14.65555 -14.33446 -13.92074 -13.83095 -13.70237 -13.42373 -12.69562 -12.48584 -12.41202 -12.34363 -11.92305 -11.75897 -11.66484 -11.60685 -11.38789 -11.37203 -10.95463 -10.41618 -10.39261 -10.09305 -9.98930 -9.81324 -9.11690 -8.95235 -8.59398 -7.83481 -7.80587 -6.44043 -4.00431 0.64663 0.86680 2.33991 2.57899 2.92133 3.10353 3.20672 3.26376 3.67214 4.00101 4.09410 4.15864 4.34804 4.68202 4.71579 4.81123 4.93868 4.98680 5.15239 5.22233 5.34241 5.44790 5.54021 5.57381 5.60433 5.69018 5.74412 6.09766 6.12008 6.19428 6.24271 6.39801 6.43557 6.69327 6.74043 6.86569 7.05649 7.47021 7.88208 7.99968 8.01872 8.34791 9.05011 9.26234 9.79237 10.60503 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.027101 B = 0.003525 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.930030 B = 7941.219995 C = 8055.209156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.084 4.084 3 C -0.082 4.082 4 C -0.143 4.143 5 C -0.046 4.046 6 C -0.190 4.190 7 C 0.160 3.840 8 N -0.535 5.535 9 C 0.398 3.602 10 N -0.521 5.521 11 C 0.081 3.919 12 C 0.429 3.571 13 O -0.580 6.580 14 N -0.436 5.436 15 C 0.105 3.895 16 C -0.307 4.307 17 H 0.098 0.902 18 C 0.034 3.966 19 N -0.879 5.879 20 Si 0.928 3.072 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.268 1.268 24 C 0.552 3.448 25 O -0.509 6.509 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.199 0.801 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.027 0.973 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.190 12.236 9.429 16.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.086 4.086 3 C -0.101 4.101 4 C -0.162 4.162 5 C -0.066 4.066 6 C -0.196 4.196 7 C 0.050 3.950 8 N -0.256 5.256 9 C 0.111 3.889 10 N -0.241 5.241 11 C -0.045 4.045 12 C 0.215 3.785 13 O -0.464 6.464 14 N -0.155 5.155 15 C -0.038 4.038 16 C -0.435 4.435 17 H 0.116 0.884 18 C -0.170 4.170 19 N -0.518 5.518 20 Si 0.754 3.246 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.193 1.193 24 C 0.346 3.654 25 O -0.383 6.383 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.215 0.785 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.045 0.955 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.381 12.509 8.989 16.673 hybrid contribution 1.252 -0.684 -0.823 1.647 sum -5.130 11.825 8.166 15.259 Atomic orbital electron populations 1.20612 0.89967 1.02789 1.02466 1.19592 0.96688 0.90468 1.01832 1.21116 0.94173 0.97337 0.97479 1.21074 0.94028 0.97887 1.03209 1.20978 1.00506 0.90486 0.94588 1.20575 0.93990 0.93932 1.11081 1.18647 0.89012 0.92082 0.95269 1.68636 1.35553 0.96300 1.25086 1.24722 0.80385 0.98394 0.85415 1.46203 1.07605 1.08826 1.61448 1.21875 1.00811 0.82271 0.99527 1.20044 0.83915 0.85203 0.89351 1.90577 1.55287 1.55252 1.45285 1.43524 1.49278 1.15678 1.06974 1.21587 1.01537 0.93542 0.87168 1.19669 1.47478 0.91812 0.84510 0.88379 1.25355 0.96600 0.95555 0.99510 1.69973 1.45188 1.01617 1.35024 0.85892 0.78860 0.78083 0.81722 1.20230 1.20806 1.19295 1.18330 0.87121 0.83695 0.76303 1.90839 1.12386 1.86498 1.48603 0.91257 0.90327 0.92030 0.85286 0.85276 0.84730 0.78507 0.86896 0.86930 0.92514 0.90281 0.95464 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 9.81 36.01 0.35 -0.69 16 2 C -0.08 -1.09 5.91 -104.31 -0.62 -1.70 16 3 C -0.08 -0.89 9.66 -39.55 -0.38 -1.27 16 4 C -0.14 -1.63 10.02 -39.52 -0.40 -2.03 16 5 C -0.05 -0.67 9.68 -39.35 -0.38 -1.05 16 6 C -0.19 -3.23 5.89 -104.77 -0.62 -3.85 16 7 C 0.16 2.52 6.60 -84.51 -0.56 1.96 16 8 N -0.53 -8.27 9.48 -12.02 -0.11 -8.38 16 9 C 0.40 5.97 11.40 -90.17 -1.03 4.94 16 10 N -0.52 -9.11 2.09 -120.14 -0.25 -9.36 16 11 C 0.08 1.41 4.45 -5.19 -0.02 1.39 16 12 C 0.43 10.12 7.69 -10.99 -0.08 10.04 16 13 O -0.58 -16.07 16.14 5.54 0.09 -15.98 16 14 N -0.44 -10.78 3.01 -122.19 -0.37 -11.15 16 15 C 0.11 2.19 8.44 59.85 0.51 2.70 16 16 C -0.31 -8.41 9.24 -14.93 -0.14 -8.55 16 17 H 0.10 2.87 7.45 -52.48 -0.39 2.48 16 18 C 0.03 0.87 5.04 -17.47 -0.09 0.78 16 19 N -0.88 -22.49 10.83 55.50 0.60 -21.89 16 20 Si 0.93 20.44 29.57 -169.99 -5.03 15.42 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C 0.55 10.67 7.66 -12.43 -0.10 10.58 16 25 O -0.51 -11.08 16.32 5.17 0.08 -10.99 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.86 7.58 -51.93 -0.39 0.46 16 28 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 29 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.13 1.88 7.83 -52.48 -0.41 1.46 16 32 H 0.20 2.21 7.99 -52.49 -0.42 1.79 16 33 H 0.11 1.91 6.73 -51.93 -0.35 1.56 16 34 H 0.11 1.48 7.96 -51.93 -0.41 1.07 16 35 H 0.06 1.16 7.82 -51.93 -0.41 0.76 16 36 H 0.08 1.77 6.80 -51.93 -0.35 1.42 16 37 H 0.03 0.46 6.61 -51.93 -0.34 0.12 16 38 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -34.28 327.68 -7.90 -42.18 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.30 Total: 1.98 kcal Atomic # 6 Polarization: 16.78 SS G_CDS: -3.55 Total: 13.23 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.13 Total: -50.78 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: 0.17 Total: -26.97 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.28 -7.90 -42.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357532905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.474 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds