Wall clock time and date at job start Tue Mar 31 2020 03:53:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31002 * 1
3 3 C 1.50702 * 119.99760 * 2 1
4 4 N 1.46501 * 109.47148 * 125.00047 * 3 2 1
5 5 C 1.34776 * 119.99499 * 269.99699 * 4 3 2
6 6 O 1.21281 * 119.99807 * 180.02562 * 5 4 3
7 7 C 1.50700 * 120.00157 * 359.97438 * 5 4 3
8 8 C 1.53002 * 109.47061 * 180.02562 * 7 5 4
9 9 C 1.50700 * 109.47061 * 179.97438 * 8 7 5
10 10 H 1.07995 * 120.00177 * 0.02562 * 9 8 7
11 11 C 1.37876 * 119.99852 * 180.02562 * 9 8 7
12 12 N 1.31515 * 120.00107 * 359.97438 * 11 9 8
13 13 Si 1.86801 * 119.99969 * 179.97438 * 11 9 8
14 14 H 1.48499 * 109.47283 * 0.02562 * 13 11 9
15 15 H 1.48508 * 109.46965 * 120.00045 * 13 11 9
16 16 H 1.48499 * 109.47469 * 239.99765 * 13 11 9
17 17 C 1.46500 * 120.00215 * 89.99605 * 4 3 2
18 18 H 1.08999 * 109.53447 * 0.36310 * 17 4 3
19 19 C 1.53879 * 109.64362 * 240.00116 * 17 4 3
20 20 C 1.55051 * 106.66190 * 192.99089 * 19 17 4
21 21 S 1.83288 * 102.56496 * 42.40758 * 20 19 17
22 22 O 1.42112 * 109.35169 * 90.18765 * 21 20 19
23 23 O 1.42098 * 109.35379 * 223.38487 * 21 20 19
24 24 C 1.54187 * 109.68876 * 120.71552 * 17 4 3
25 25 H 1.08000 * 120.00098 * 0.02562 * 1 2 3
26 26 H 1.08000 * 120.00193 * 179.97438 * 1 2 3
27 27 H 1.07994 * 120.00178 * 179.97438 * 2 1 3
28 28 H 1.08998 * 109.47087 * 4.99458 * 3 2 1
29 29 H 1.09000 * 109.46841 * 244.99831 * 3 2 1
30 30 H 1.08995 * 109.47253 * 299.99579 * 7 5 4
31 31 H 1.09001 * 109.47049 * 60.00084 * 7 5 4
32 32 H 1.09008 * 109.47003 * 299.99921 * 8 7 5
33 33 H 1.09001 * 109.47156 * 60.00107 * 8 7 5
34 34 H 0.97000 * 119.99664 * 179.97438 * 12 11 9
35 35 H 1.09002 * 110.02983 * 73.67605 * 19 17 4
36 36 H 1.09000 * 110.02705 * 312.30775 * 19 17 4
37 37 H 1.08996 * 110.78938 * 160.67598 * 20 19 17
38 38 H 1.08995 * 110.78952 * 283.95063 * 20 19 17
39 39 H 1.08998 * 110.27559 * 28.81209 * 24 17 4
40 40 H 1.09002 * 110.34274 * 266.63185 * 24 17 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3052 0.0000
4 7 2.9938 1.3320 1.1314
5 6 2.5935 1.8224 2.3213
6 8 3.3638 1.8451 3.2578
7 6 1.1894 2.3437 2.4877
8 6 0.9958 2.8387 3.9224
9 6 -0.4081 3.3606 4.0886
10 1 -1.0939 3.3407 3.2546
11 6 -0.8171 3.8634 5.3056
12 7 0.0178 3.8871 6.3214
13 14 -2.5572 4.5109 5.5114
14 1 -3.2919 4.3726 4.2284
15 1 -3.2536 3.7318 6.5666
16 1 -2.5096 5.9424 5.9033
17 6 4.3589 0.8257 0.9695
18 1 4.5000 0.4790 -0.0542
19 6 4.5986 -0.3379 1.9475
20 6 6.1270 -0.5984 1.9626
21 16 6.8202 1.0980 1.9997
22 8 6.9853 1.5097 3.3498
23 8 7.9119 1.1805 1.0939
24 6 5.3694 1.9482 1.2798
25 1 -0.5400 0.9353 -0.0004
26 1 -0.5400 -0.9353 -0.0004
27 1 1.8500 -0.9352 0.0004
28 1 1.3585 2.1316 0.0895
29 1 2.6213 1.4026 -0.9314
30 1 1.0232 3.1678 1.7939
31 1 0.4781 1.5444 2.2796
32 1 1.1622 2.0149 4.6166
33 1 1.7071 3.6381 4.1300
34 1 -0.2699 4.2411 7.1774
35 1 4.0715 -1.2283 1.6047
36 1 4.2568 -0.0631 2.9454
37 1 6.4159 -1.1540 2.8546
38 1 6.4382 -1.1269 1.0616
39 1 4.9461 2.6493 1.9991
40 1 5.6513 2.4681 0.3642
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000360390601.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:53:24
Heat of formation + Delta-G solvation = -83.748235 kcal
Electronic energy + Delta-G solvation = -23206.225502 eV
Core-core repulsion = 19728.134140 eV
Total energy + Delta-G solvation = -3478.091362 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 301.118 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.20883 -37.05570 -36.62082 -36.02779 -35.45486 -33.43794 -32.50194 -31.01212
-29.64356 -26.36607 -26.13086 -24.69065 -22.54443 -20.92915 -20.20832 -18.91472
-18.50487 -17.44946 -16.94487 -16.52879 -15.87850 -15.80260 -15.52290 -15.36131
-14.52427 -14.43569 -14.30702 -13.94370 -13.53401 -13.34593 -13.05572 -12.73624
-12.47289 -12.21491 -12.19679 -12.03714 -11.97037 -11.79435 -11.59945 -11.40535
-11.11743 -10.97739 -10.78195 -10.60520 -10.41623 -10.03347 -9.67559 -9.61305
-9.17312 -9.02061 -8.72551 -8.35135 -5.98735 -4.03477 -0.02823 2.04099
2.43536 2.99417 3.14010 3.30286 3.37789 3.40291 3.52025 3.94875
4.22178 4.39549 4.45425 4.46384 4.63263 4.75150 4.76990 4.94254
5.13628 5.17388 5.35810 5.36455 5.39082 5.50974 5.54425 5.72952
5.80698 5.90032 6.13195 6.17429 6.45691 6.53717 6.57408 6.81022
7.51020 7.70939 7.81580 8.03318 8.33411 8.55743 9.04752 9.60419
11.12120
Molecular weight = 301.12amu
Principal moments of inertia in cm(-1)
A = 0.017312 B = 0.004184 C = 0.003544
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1617.008076 B = 6690.760077 C = 7898.195564
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.184 4.184
3 C 0.137 3.863
4 N -0.614 5.614
5 C 0.513 3.487
6 O -0.521 6.521
7 C -0.129 4.129
8 C 0.036 3.964
9 C -0.527 4.527
10 H 0.055 0.945
11 C 0.059 3.941
12 N -0.888 5.888
13 Si 0.891 3.109
14 H -0.273 1.273
15 H -0.284 1.284
16 H -0.284 1.284
17 C 0.163 3.837
18 H 0.104 0.896
19 C -0.141 4.141
20 C -0.584 4.584
21 S 2.393 3.607
22 O -0.923 6.923
23 O -0.947 6.947
24 C -0.610 4.610
25 H 0.103 0.897
26 H 0.098 0.902
27 H 0.108 0.892
28 H 0.092 0.908
29 H 0.084 0.916
30 H 0.079 0.921
31 H 0.082 0.918
32 H 0.024 0.976
33 H 0.024 0.976
34 H 0.261 0.739
35 H 0.095 0.905
36 H 0.112 0.888
37 H 0.138 0.862
38 H 0.134 0.866
39 H 0.156 0.844
40 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.554 -10.118 -16.816 21.029
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.203 4.203
3 C 0.014 3.986
4 N -0.349 5.349
5 C 0.304 3.696
6 O -0.396 6.396
7 C -0.169 4.169
8 C -0.001 4.001
9 C -0.565 4.565
10 H 0.074 0.926
11 C -0.143 4.143
12 N -0.526 5.526
13 Si 0.719 3.281
14 H -0.198 1.198
15 H -0.210 1.210
16 H -0.210 1.210
17 C 0.057 3.943
18 H 0.122 0.878
19 C -0.180 4.180
20 C -0.714 4.714
21 S 2.576 3.424
22 O -0.920 6.920
23 O -0.945 6.945
24 C -0.740 4.740
25 H 0.121 0.879
26 H 0.117 0.883
27 H 0.126 0.874
28 H 0.111 0.889
29 H 0.102 0.898
30 H 0.097 0.903
31 H 0.100 0.900
32 H 0.042 0.958
33 H 0.042 0.958
34 H 0.070 0.930
35 H 0.114 0.886
36 H 0.130 0.870
37 H 0.157 0.843
38 H 0.153 0.847
39 H 0.174 0.826
40 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges 8.875 -9.671 -15.792 20.535
hybrid contribution -1.799 -0.033 -0.186 1.809
sum 7.076 -9.704 -15.979 19.989
Atomic orbital electron populations
1.23969 0.95835 1.02467 0.98223 1.23278 0.96362 0.98719 1.01946
1.20746 0.92528 0.96272 0.89009 1.48212 1.10765 1.63779 1.12102
1.21708 0.91424 0.75874 0.80636 1.90668 1.55487 1.54388 1.39091
1.21949 0.90035 1.00721 1.04172 1.18925 0.96652 0.97028 0.87536
1.21212 0.97466 1.41258 0.96574 0.92638 1.25017 0.97304 0.95940
0.96042 1.70005 1.34913 1.45844 1.01885 0.86559 0.84808 0.78640
0.78074 1.19777 1.21018 1.21010 1.21251 0.82559 0.90215 1.00256
0.87830 1.22697 0.92183 0.99076 1.04037 1.30546 1.06815 1.22589
1.11482 1.08912 0.77412 0.80022 0.76092 1.93666 1.85298 1.79835
1.33220 1.93591 1.49162 1.85776 1.65922 1.30966 1.17676 1.11129
1.14277 0.87877 0.88320 0.87417 0.88949 0.89794 0.90314 0.89953
0.95772 0.95784 0.92956 0.88634 0.86992 0.84350 0.84741 0.82634
0.84533
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.54 13.86 29.01 0.40 -1.14 16
2 C -0.18 -1.66 9.74 -36.03 -0.35 -2.01 16
3 C 0.14 1.28 5.62 -5.19 -0.03 1.25 16
4 N -0.61 -7.53 2.43 -166.24 -0.40 -7.93 16
5 C 0.51 8.92 6.84 -10.99 -0.08 8.84 16
6 O -0.52 -10.91 12.40 5.56 0.07 -10.84 16
7 C -0.13 -2.46 4.19 -27.88 -0.12 -2.58 16
8 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16
9 C -0.53 -14.53 9.11 -34.44 -0.31 -14.84 16
10 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16
11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
12 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16
13 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16
14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
17 C 0.16 1.63 2.98 -66.85 -0.20 1.44 16
18 H 0.10 0.65 7.80 -51.93 -0.40 0.24 16
19 C -0.14 -1.44 5.80 -25.19 -0.15 -1.58 16
20 C -0.58 -4.85 7.31 38.24 0.28 -4.57 16
21 S 2.39 27.85 6.11 -107.50 -0.66 27.19 16
22 O -0.92 -15.44 18.15 -57.71 -1.05 -16.48 16
23 O -0.95 -12.84 18.15 -57.71 -1.05 -13.89 16
24 C -0.61 -6.68 6.54 37.78 0.25 -6.43 16
25 H 0.10 0.96 7.84 -52.49 -0.41 0.55 16
26 H 0.10 0.82 8.06 -52.49 -0.42 0.39 16
27 H 0.11 0.87 8.06 -52.49 -0.42 0.45 16
28 H 0.09 0.89 6.09 -51.93 -0.32 0.58 16
29 H 0.08 0.56 7.92 -51.93 -0.41 0.15 16
30 H 0.08 1.37 7.40 -51.93 -0.38 0.99 16
31 H 0.08 1.46 7.54 -51.93 -0.39 1.07 16
32 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16
33 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16
34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16
36 H 0.11 1.55 6.02 -51.93 -0.31 1.23 16
37 H 0.14 1.05 8.14 -51.93 -0.42 0.62 16
38 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.16 2.21 6.08 -51.93 -0.32 1.89 16
40 H 0.14 1.10 8.14 -51.93 -0.42 0.67 16
LS Contribution 340.69 15.07 5.13 5.13
Total: -1.00 -37.86 340.69 -8.62 -46.48
By element:
Atomic # 1 Polarization: 5.47 SS G_CDS: -5.87 Total: -0.40 kcal
Atomic # 6 Polarization: -18.71 SS G_CDS: -0.52 Total: -19.23 kcal
Atomic # 7 Polarization: -34.59 SS G_CDS: 0.33 Total: -34.26 kcal
Atomic # 8 Polarization: -39.19 SS G_CDS: -2.03 Total: -41.22 kcal
Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal
Atomic # 16 Polarization: 27.85 SS G_CDS: -0.66 Total: 27.19 kcal
Total LS contribution 5.13 Total: 5.13 kcal
Total: -37.86 -8.62 -46.48 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000360390601.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.268 kcal
(2) G-P(sol) polarization free energy of solvation -37.859 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.127 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.480 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.748 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds