Wall clock time and date at job start Tue Mar 31 2020 03:53:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31002 * 1
3 3 C 1.50702 * 119.99760 * 2 1
4 4 N 1.46501 * 109.47148 * 125.00047 * 3 2 1
5 5 C 1.34776 * 119.99499 * 269.99699 * 4 3 2
6 6 O 1.21281 * 119.99807 * 180.02562 * 5 4 3
7 7 C 1.50700 * 120.00157 * 359.97438 * 5 4 3
8 8 C 1.53002 * 109.47061 * 180.02562 * 7 5 4
9 9 C 1.50700 * 109.47061 * 179.97438 * 8 7 5
10 10 H 1.07995 * 120.00177 * 0.02562 * 9 8 7
11 11 C 1.37876 * 119.99852 * 180.02562 * 9 8 7
12 12 N 1.31515 * 120.00107 * 359.97438 * 11 9 8
13 13 Si 1.86801 * 119.99969 * 179.97438 * 11 9 8
14 14 H 1.48499 * 109.47283 * 0.02562 * 13 11 9
15 15 H 1.48508 * 109.46965 * 120.00045 * 13 11 9
16 16 H 1.48499 * 109.47469 * 239.99765 * 13 11 9
17 17 C 1.46500 * 120.00215 * 89.99605 * 4 3 2
18 18 H 1.08999 * 109.53447 * 0.36310 * 17 4 3
19 19 C 1.53879 * 109.64362 * 240.00116 * 17 4 3
20 20 C 1.55051 * 106.66190 * 192.99089 * 19 17 4
21 21 S 1.83288 * 102.56496 * 42.40758 * 20 19 17
22 22 O 1.42112 * 109.35169 * 90.18765 * 21 20 19
23 23 O 1.42098 * 109.35379 * 223.38487 * 21 20 19
24 24 C 1.54187 * 109.68876 * 120.71552 * 17 4 3
25 25 H 1.08000 * 120.00098 * 0.02562 * 1 2 3
26 26 H 1.08000 * 120.00193 * 179.97438 * 1 2 3
27 27 H 1.07994 * 120.00178 * 179.97438 * 2 1 3
28 28 H 1.08998 * 109.47087 * 4.99458 * 3 2 1
29 29 H 1.09000 * 109.46841 * 244.99831 * 3 2 1
30 30 H 1.08995 * 109.47253 * 299.99579 * 7 5 4
31 31 H 1.09001 * 109.47049 * 60.00084 * 7 5 4
32 32 H 1.09008 * 109.47003 * 299.99921 * 8 7 5
33 33 H 1.09001 * 109.47156 * 60.00107 * 8 7 5
34 34 H 0.97000 * 119.99664 * 179.97438 * 12 11 9
35 35 H 1.09002 * 110.02983 * 73.67605 * 19 17 4
36 36 H 1.09000 * 110.02705 * 312.30775 * 19 17 4
37 37 H 1.08996 * 110.78938 * 160.67598 * 20 19 17
38 38 H 1.08995 * 110.78952 * 283.95063 * 20 19 17
39 39 H 1.08998 * 110.27559 * 28.81209 * 24 17 4
40 40 H 1.09002 * 110.34274 * 266.63185 * 24 17 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3052 0.0000
4 7 2.9938 1.3320 1.1314
5 6 2.5935 1.8224 2.3213
6 8 3.3638 1.8451 3.2578
7 6 1.1894 2.3437 2.4877
8 6 0.9958 2.8387 3.9224
9 6 -0.4081 3.3606 4.0886
10 1 -1.0939 3.3407 3.2546
11 6 -0.8171 3.8634 5.3056
12 7 0.0178 3.8871 6.3214
13 14 -2.5572 4.5109 5.5114
14 1 -3.2919 4.3726 4.2284
15 1 -3.2536 3.7318 6.5666
16 1 -2.5096 5.9424 5.9033
17 6 4.3589 0.8257 0.9695
18 1 4.5000 0.4790 -0.0542
19 6 4.5986 -0.3379 1.9475
20 6 6.1270 -0.5984 1.9626
21 16 6.8202 1.0980 1.9997
22 8 6.9853 1.5097 3.3498
23 8 7.9119 1.1805 1.0939
24 6 5.3694 1.9482 1.2798
25 1 -0.5400 0.9353 -0.0004
26 1 -0.5400 -0.9353 -0.0004
27 1 1.8500 -0.9352 0.0004
28 1 1.3585 2.1316 0.0895
29 1 2.6213 1.4026 -0.9314
30 1 1.0232 3.1678 1.7939
31 1 0.4781 1.5444 2.2796
32 1 1.1622 2.0149 4.6166
33 1 1.7071 3.6381 4.1300
34 1 -0.2699 4.2411 7.1774
35 1 4.0715 -1.2283 1.6047
36 1 4.2568 -0.0631 2.9454
37 1 6.4159 -1.1540 2.8546
38 1 6.4382 -1.1269 1.0616
39 1 4.9461 2.6493 1.9991
40 1 5.6513 2.4681 0.3642
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000360390601.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:53:23
Heat of formation + Delta-G solvation = -112.610043 kcal
Electronic energy + Delta-G solvation = -23207.477044 eV
Core-core repulsion = 19728.134140 eV
Total energy + Delta-G solvation = -3479.342904 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 301.118 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.37468 -38.09218 -37.77406 -37.07581 -36.33243 -35.42210 -33.38343 -32.83790
-30.56337 -27.99002 -27.03751 -25.89170 -23.89904 -22.35978 -20.96459 -19.88589
-19.65707 -18.81196 -18.03777 -17.87387 -17.16167 -16.85275 -16.60731 -16.52488
-16.34241 -15.50318 -15.17424 -14.92165 -14.59834 -14.58838 -14.21903 -14.07581
-13.73314 -13.35198 -13.25074 -13.21107 -13.11127 -12.98923 -12.78939 -12.69338
-12.44662 -12.35130 -12.12343 -11.92491 -11.68520 -11.56353 -11.28337 -11.22836
-10.58558 -10.55382 -10.20752 -9.74898 -8.17762 -6.31654 -0.91840 1.30461
1.41889 1.42895 1.55012 1.55986 1.72050 2.16928 2.43144 2.64262
3.07066 3.15731 3.38394 3.56349 3.68111 3.91029 4.00332 4.05792
4.13141 4.25336 4.45488 4.50179 4.53480 4.55221 4.63437 4.78667
4.86603 4.89665 5.06661 5.09357 5.17604 5.49548 5.61642 5.64161
5.81919 5.86049 5.89040 6.18030 6.36375 6.87527 7.26312 7.38983
8.94993
Molecular weight = 301.12amu
Principal moments of inertia in cm(-1)
A = 0.017312 B = 0.004184 C = 0.003544
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1617.008076 B = 6690.760077 C = 7898.195564
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.183 4.183
3 C 0.128 3.872
4 N -0.597 5.597
5 C 0.510 3.490
6 O -0.569 6.569
7 C -0.118 4.118
8 C 0.042 3.958
9 C -0.539 4.539
10 H 0.075 0.925
11 C -0.006 4.006
12 N -0.938 5.938
13 Si 0.971 3.029
14 H -0.251 1.251
15 H -0.281 1.281
16 H -0.282 1.282
17 C 0.155 3.845
18 H 0.164 0.836
19 C -0.147 4.147
20 C -0.549 4.549
21 S 2.386 3.614
22 O -0.991 6.991
23 O -0.970 6.970
24 C -0.606 4.606
25 H 0.098 0.902
26 H 0.106 0.894
27 H 0.124 0.876
28 H 0.087 0.913
29 H 0.125 0.875
30 H 0.099 0.901
31 H 0.100 0.900
32 H -0.018 1.018
33 H -0.020 1.020
34 H 0.262 0.738
35 H 0.128 0.872
36 H 0.068 0.932
37 H 0.147 0.853
38 H 0.182 0.818
39 H 0.118 0.882
40 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.225 -11.829 -20.581 24.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.202 4.202
3 C 0.006 3.994
4 N -0.330 5.330
5 C 0.301 3.699
6 O -0.448 6.448
7 C -0.157 4.157
8 C 0.005 3.995
9 C -0.577 4.577
10 H 0.093 0.907
11 C -0.204 4.204
12 N -0.578 5.578
13 Si 0.795 3.205
14 H -0.174 1.174
15 H -0.207 1.207
16 H -0.208 1.208
17 C 0.050 3.950
18 H 0.182 0.818
19 C -0.186 4.186
20 C -0.683 4.683
21 S 2.574 3.426
22 O -0.988 6.988
23 O -0.967 6.967
24 C -0.737 4.737
25 H 0.116 0.884
26 H 0.124 0.876
27 H 0.142 0.858
28 H 0.105 0.895
29 H 0.143 0.857
30 H 0.117 0.883
31 H 0.118 0.882
32 H 0.000 1.000
33 H -0.001 1.001
34 H 0.071 0.929
35 H 0.146 0.854
36 H 0.087 0.913
37 H 0.165 0.835
38 H 0.200 0.800
39 H 0.137 0.863
40 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges 7.564 -11.369 -19.621 23.905
hybrid contribution -1.384 0.437 0.924 1.721
sum 6.180 -10.933 -18.697 22.523
Atomic orbital electron populations
1.24103 0.96284 1.02737 0.98569 1.23360 0.96254 0.99041 1.01509
1.21097 0.92603 0.96489 0.89164 1.48048 1.12214 1.61815 1.10884
1.21304 0.90307 0.76360 0.81958 1.90677 1.56310 1.56506 1.41300
1.21665 0.92374 1.01953 0.99716 1.18694 0.95306 0.94202 0.91335
1.21718 0.98227 1.40516 0.97194 0.90653 1.26112 1.02312 0.96229
0.95705 1.70190 1.37692 1.47325 1.02642 0.85318 0.78758 0.77596
0.78846 1.17413 1.20723 1.20815 1.21747 0.80468 0.89467 1.03275
0.81849 1.22730 0.93451 1.00365 1.02043 1.30367 1.04740 1.18793
1.14352 1.08824 0.77582 0.81796 0.74372 1.93584 1.86558 1.82040
1.36661 1.93551 1.50706 1.86791 1.65634 1.30869 1.17162 1.11162
1.14541 0.88360 0.87571 0.85795 0.89468 0.85669 0.88327 0.88205
0.99991 1.00149 0.92949 0.85411 0.91341 0.83456 0.80037 0.86345
0.81325
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.77 13.86 67.78 0.94 -1.83 16
2 C -0.18 -2.55 9.74 25.65 0.25 -2.30 16
3 C 0.13 1.85 5.62 85.63 0.48 2.33 16
4 N -0.60 -13.13 2.43 -798.26 -1.94 -15.07 16
5 C 0.51 17.95 6.84 87.66 0.60 18.55 16
6 O -0.57 -25.42 12.40 -3.03 -0.04 -25.46 16
7 C -0.12 -4.52 4.19 29.85 0.13 -4.39 16
8 C 0.04 2.32 4.26 29.85 0.13 2.44 16
9 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16
10 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16
11 C -0.01 -0.36 5.46 84.65 0.46 0.10 16
12 N -0.94 -59.71 13.29 21.45 0.28 -59.42 16
13 Si 0.97 44.01 29.54 68.60 2.03 46.03 16
14 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16
15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16
17 C 0.15 2.56 2.98 45.69 0.14 2.70 16
18 H 0.16 0.87 7.80 -2.39 -0.02 0.85 16
19 C -0.15 -2.59 5.80 31.59 0.18 -2.41 16
20 C -0.55 -7.41 7.31 72.68 0.53 -6.88 16
21 S 2.39 55.18 6.11 -56.49 -0.34 54.84 16
22 O -0.99 -35.83 18.15 -127.49 -2.31 -38.14 16
23 O -0.97 -25.44 18.15 -127.49 -2.31 -27.75 16
24 C -0.61 -12.58 6.54 72.38 0.47 -12.11 16
25 H 0.10 1.60 7.84 -2.91 -0.02 1.57 16
26 H 0.11 1.46 8.06 -2.91 -0.02 1.44 16
27 H 0.12 1.36 8.06 -2.91 -0.02 1.34 16
28 H 0.09 1.39 6.09 -2.39 -0.01 1.38 16
29 H 0.13 0.88 7.92 -2.39 -0.02 0.86 16
30 H 0.10 3.35 7.40 -2.39 -0.02 3.34 16
31 H 0.10 3.45 7.54 -2.39 -0.02 3.43 16
32 H -0.02 -1.14 8.10 -2.38 -0.02 -1.16 16
33 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16
34 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16
35 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16
36 H 0.07 1.91 6.02 -2.39 -0.01 1.89 16
37 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16
38 H 0.18 0.85 8.14 -2.39 -0.02 0.83 16
39 H 0.12 3.55 6.08 -2.39 -0.01 3.54 16
40 H 0.17 2.26 8.14 -2.39 -0.02 2.24 16
Total: -1.00 -90.88 340.69 0.93 -89.95
By element:
Atomic # 1 Polarization: 7.80 SS G_CDS: 1.03 Total: 8.83 kcal
Atomic # 6 Polarization: -38.34 SS G_CDS: 4.54 Total: -33.79 kcal
Atomic # 7 Polarization: -72.84 SS G_CDS: -1.65 Total: -74.49 kcal
Atomic # 8 Polarization: -86.69 SS G_CDS: -4.66 Total: -91.36 kcal
Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal
Atomic # 16 Polarization: 55.18 SS G_CDS: -0.34 Total: 54.84 kcal
Total: -90.88 0.93 -89.95 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000360390601.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.664 kcal
(2) G-P(sol) polarization free energy of solvation -90.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.539 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.946 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.610 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds