Wall clock time and date at job start Tue Mar 31 2020 03:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.95759 * 2 1 4 4 O 1.43429 * 109.85698 * 238.97362 * 2 1 3 5 5 C 1.43712 * 109.93180 * 238.35604 * 4 2 1 6 6 C 1.55062 * 105.20817 * 24.30579 * 5 4 2 7 7 C 1.53652 * 109.85881 * 121.02459 * 2 1 3 8 8 C 1.52038 * 110.75916 * 341.24933 * 7 2 1 9 9 N 1.47314 * 108.62187 * 185.92723 * 8 7 2 10 10 C 1.34772 * 121.07794 * 229.24607 * 9 8 7 11 11 O 1.21281 * 119.99720 * 359.72078 * 10 9 8 12 12 C 1.50694 * 120.00401 * 179.72229 * 10 9 8 13 13 S 1.81005 * 109.47415 * 179.97438 * 12 10 9 14 14 C 1.76198 * 99.99931 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00293 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99843 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00253 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99752 * 359.71878 * 16 14 13 19 19 H 1.48498 * 109.46603 * 90.00499 * 18 16 14 20 20 H 1.48496 * 109.47225 * 210.00416 * 18 16 14 21 21 H 1.48494 * 109.47296 * 330.00427 * 18 16 14 22 22 C 1.47173 * 117.84881 * 48.97805 * 9 8 7 23 23 C 1.53278 * 108.56245 * 309.06715 * 22 9 8 24 24 O 1.41971 * 111.02273 * 216.99195 * 7 2 1 25 25 H 1.08997 * 109.46737 * 298.97962 * 1 2 3 26 26 H 1.09005 * 109.46642 * 58.97395 * 1 2 3 27 27 H 1.08997 * 109.47191 * 178.97289 * 1 2 3 28 28 H 1.08998 * 110.29677 * 143.24492 * 5 4 2 29 29 H 1.09003 * 110.29616 * 265.37370 * 5 4 2 30 30 H 1.09007 * 111.13963 * 206.32752 * 6 5 4 31 31 H 1.08998 * 111.13439 * 82.13615 * 6 5 4 32 32 H 1.09001 * 109.62017 * 66.10137 * 8 7 2 33 33 H 1.09001 * 109.51490 * 305.69930 * 8 7 2 34 34 H 1.09002 * 109.47362 * 59.99907 * 12 10 9 35 35 H 1.09005 * 109.46865 * 300.00021 * 12 10 9 36 36 H 0.97000 * 120.00481 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.62250 * 68.79320 * 22 9 8 38 38 H 1.09002 * 109.61631 * 189.15800 * 22 9 8 39 39 H 1.08996 * 109.50992 * 172.87242 * 23 22 9 40 40 H 1.09003 * 109.51274 * 293.02607 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9021 1.0245 0.0000 4 8 2.0173 -0.6953 -1.1560 5 6 2.8503 -1.7943 -0.7517 6 6 2.3869 -2.1491 0.6849 7 6 2.0520 -0.7448 1.2384 8 6 0.9689 -0.8501 2.3002 9 7 1.5568 -1.4410 3.5148 10 6 0.9609 -2.4724 4.1453 11 8 -0.0792 -2.9258 3.7167 12 6 1.5868 -3.0624 5.3826 13 16 0.5564 -4.4204 5.9912 14 6 1.4964 -4.9107 7.3986 15 1 2.4133 -4.3946 7.6421 16 6 1.0590 -5.9610 8.1937 17 7 1.7608 -6.3270 9.2453 18 14 -0.5303 -6.8495 7.7761 19 1 -0.2374 -7.9867 6.8672 20 1 -1.1541 -7.3604 9.0231 21 1 -1.4627 -5.9078 7.1061 22 6 2.8191 -0.8725 4.0143 23 6 3.8193 -0.8113 2.8544 24 8 3.2206 -0.1231 1.7518 25 1 -0.3633 0.4979 0.8990 26 1 -0.3633 0.5297 -0.8807 27 1 -0.3633 -1.0275 -0.0184 28 1 2.7035 -2.6449 -1.4173 29 1 3.8979 -1.4931 -0.7475 30 1 3.1919 -2.6142 1.2540 31 1 1.5023 -2.7856 0.6666 32 1 0.1610 -1.4853 1.9371 33 1 0.5821 0.1437 2.5255 34 1 1.6657 -2.2940 6.1516 35 1 2.5809 -3.4395 5.1424 36 1 1.4550 -7.0607 9.8012 37 1 2.6416 0.1321 4.3980 38 1 3.2152 -1.5036 4.8099 39 1 4.7147 -0.2780 3.1737 40 1 4.0864 -1.8233 2.5502 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366384698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:38 Heat of formation + Delta-G solvation = -111.779535 kcal Electronic energy + Delta-G solvation = -23340.180579 eV Core-core repulsion = 19860.873688 eV Total energy + Delta-G solvation = -3479.306890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.34968 -39.25763 -37.74107 -34.85819 -33.46717 -32.49568 -31.51016 -29.83665 -29.54628 -26.48433 -25.69399 -25.31451 -23.78309 -21.97540 -20.40012 -19.22171 -17.92204 -17.61461 -17.01599 -16.47545 -15.96063 -15.82506 -15.45792 -15.25923 -15.01733 -14.57934 -14.36048 -13.99381 -13.82709 -13.51938 -13.14573 -12.99508 -12.84538 -12.70868 -12.22107 -12.14473 -11.77257 -11.75074 -11.56727 -11.31396 -11.25716 -11.05729 -10.76667 -10.63128 -10.29885 -9.91575 -9.84993 -9.60349 -9.05809 -8.65864 -8.56827 -6.99233 -6.34378 -4.07052 2.53070 2.78522 3.03802 3.15380 3.28647 3.45807 3.48511 3.51989 4.06997 4.26491 4.29313 4.46678 4.55246 4.59765 4.72404 4.82867 4.89183 4.92253 5.00824 5.04760 5.06122 5.16092 5.23861 5.33196 5.37472 5.45274 5.49482 5.51999 5.63504 5.63889 5.71990 5.75161 5.87604 5.90900 6.28870 6.63594 6.85358 7.27173 7.88432 8.27465 8.35431 9.11654 10.74789 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.028397 B = 0.003618 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.767331 B = 7736.408748 C = 8089.539265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.098 3.902 3 H 0.092 0.908 4 O -0.375 6.375 5 C 0.057 3.943 6 C -0.181 4.181 7 C 0.076 3.924 8 C 0.099 3.901 9 N -0.622 5.622 10 C 0.536 3.464 11 O -0.515 6.515 12 C -0.122 4.122 13 S -0.140 6.140 14 C -0.523 4.523 15 H 0.088 0.912 16 C 0.097 3.903 17 N -0.879 5.879 18 Si 0.856 3.144 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.235 1.235 22 C 0.071 3.929 23 C 0.044 3.956 24 O -0.361 6.361 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.271 0.729 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.558 13.732 -16.840 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.109 0.891 4 O -0.295 6.295 5 C -0.019 4.019 6 C -0.219 4.219 7 C 0.035 3.965 8 C -0.024 4.024 9 N -0.359 5.359 10 C 0.324 3.676 11 O -0.389 6.389 12 C -0.272 4.272 13 S 0.086 5.914 14 C -0.670 4.670 15 H 0.106 0.894 16 C -0.112 4.112 17 N -0.516 5.516 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 C -0.052 4.052 23 C -0.033 4.033 24 O -0.280 6.280 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.046 13.147 -17.577 22.044 hybrid contribution 0.833 -0.314 1.072 1.394 sum 2.879 12.833 -16.504 21.103 Atomic orbital electron populations 1.22230 0.93511 1.03478 1.03101 1.22453 0.94498 0.96578 0.82450 0.89050 1.88482 1.67091 1.44468 1.29436 1.23350 0.94646 0.89327 0.94622 1.23796 1.03730 0.97346 0.96985 1.22632 0.86933 0.92890 0.94027 1.22071 0.96027 0.99843 0.84486 1.48179 1.24945 1.34712 1.28045 1.20326 0.84436 0.78291 0.84512 1.90696 1.22641 1.59633 1.65921 1.23306 1.03849 1.03010 0.97084 1.84816 1.33953 1.38084 1.34538 1.22294 1.11787 1.21777 1.11182 0.89383 1.24702 0.97152 0.95613 0.93721 1.69929 1.38511 1.27991 1.15132 0.86747 0.84300 0.81812 0.79072 1.19176 1.19854 1.15938 1.22450 0.84565 1.00642 0.97581 1.23115 0.95727 0.98425 0.86057 1.87819 1.40831 1.50438 1.48871 0.90666 0.91097 0.91442 0.89526 0.91825 0.89182 0.89018 0.87384 0.90572 0.88388 0.88566 0.91870 0.90284 0.87989 0.87085 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 8.38 37.16 0.31 -1.12 16 2 C 0.10 0.98 3.89 -26.39 -0.10 0.88 16 3 H 0.09 0.88 8.06 -51.93 -0.42 0.46 16 4 O -0.38 -4.28 11.03 -35.23 -0.39 -4.67 16 5 C 0.06 0.56 7.78 38.25 0.30 0.85 16 6 C -0.18 -1.90 6.00 -24.80 -0.15 -2.05 16 7 C 0.08 0.80 0.79 -89.93 -0.07 0.73 16 8 C 0.10 1.14 4.00 -4.09 -0.02 1.13 16 9 N -0.62 -8.14 2.93 -172.90 -0.51 -8.65 16 10 C 0.54 9.31 7.73 -10.99 -0.08 9.22 16 11 O -0.51 -10.72 15.35 5.56 0.09 -10.63 16 12 C -0.12 -2.28 4.53 36.00 0.16 -2.12 16 13 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 14 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 15 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 16 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 17 N -0.88 -26.13 13.97 55.49 0.78 -25.35 16 18 Si 0.86 21.44 27.73 -169.99 -4.71 16.73 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 22 C 0.07 0.71 6.53 -3.53 -0.02 0.69 16 23 C 0.04 0.38 6.77 37.30 0.25 0.64 16 24 O -0.36 -3.79 10.23 -35.23 -0.36 -4.16 16 25 H 0.07 0.57 6.47 -51.93 -0.34 0.24 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.63 7.53 -51.93 -0.39 0.24 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.93 6.02 -51.93 -0.31 0.62 16 31 H 0.09 1.05 7.82 -51.93 -0.41 0.64 16 32 H 0.11 1.39 5.73 -51.93 -0.30 1.09 16 33 H 0.08 0.79 7.12 -51.93 -0.37 0.42 16 34 H 0.10 1.71 8.00 -51.91 -0.42 1.29 16 35 H 0.10 1.65 7.68 -51.91 -0.40 1.25 16 36 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.98 6.05 -51.93 -0.31 0.67 16 39 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.55 6.16 -51.93 -0.32 0.23 16 LS Contribution 326.41 15.07 4.92 4.92 Total: -1.00 -33.36 326.41 -7.06 -40.42 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.67 Total: -0.26 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 0.79 Total: -2.89 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.27 Total: -34.00 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.66 Total: -19.45 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.73 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.36 -7.06 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366384698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.359 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds