Wall clock time and date at job start Tue Mar 31 2020 03:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.95759 * 2 1 4 4 O 1.43429 * 109.85698 * 238.97362 * 2 1 3 5 5 C 1.43712 * 109.93180 * 238.35604 * 4 2 1 6 6 C 1.55062 * 105.20817 * 24.30579 * 5 4 2 7 7 C 1.53652 * 109.85881 * 121.02459 * 2 1 3 8 8 C 1.52038 * 110.75916 * 341.24933 * 7 2 1 9 9 N 1.47314 * 108.62187 * 185.92723 * 8 7 2 10 10 C 1.34772 * 121.07794 * 229.24607 * 9 8 7 11 11 O 1.21281 * 119.99720 * 359.72078 * 10 9 8 12 12 C 1.50694 * 120.00401 * 179.72229 * 10 9 8 13 13 S 1.81005 * 109.47415 * 179.97438 * 12 10 9 14 14 C 1.76198 * 99.99931 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00293 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99843 * 180.02562 * 14 13 12 17 17 N 1.31624 * 120.00253 * 180.02562 * 16 14 13 18 18 Si 1.86805 * 119.99752 * 359.71878 * 16 14 13 19 19 H 1.48498 * 109.46603 * 90.00499 * 18 16 14 20 20 H 1.48496 * 109.47225 * 210.00416 * 18 16 14 21 21 H 1.48494 * 109.47296 * 330.00427 * 18 16 14 22 22 C 1.47173 * 117.84881 * 48.97805 * 9 8 7 23 23 C 1.53278 * 108.56245 * 309.06715 * 22 9 8 24 24 O 1.41971 * 111.02273 * 216.99195 * 7 2 1 25 25 H 1.08997 * 109.46737 * 298.97962 * 1 2 3 26 26 H 1.09005 * 109.46642 * 58.97395 * 1 2 3 27 27 H 1.08997 * 109.47191 * 178.97289 * 1 2 3 28 28 H 1.08998 * 110.29677 * 143.24492 * 5 4 2 29 29 H 1.09003 * 110.29616 * 265.37370 * 5 4 2 30 30 H 1.09007 * 111.13963 * 206.32752 * 6 5 4 31 31 H 1.08998 * 111.13439 * 82.13615 * 6 5 4 32 32 H 1.09001 * 109.62017 * 66.10137 * 8 7 2 33 33 H 1.09001 * 109.51490 * 305.69930 * 8 7 2 34 34 H 1.09002 * 109.47362 * 59.99907 * 12 10 9 35 35 H 1.09005 * 109.46865 * 300.00021 * 12 10 9 36 36 H 0.97000 * 120.00481 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.62250 * 68.79320 * 22 9 8 38 38 H 1.09002 * 109.61631 * 189.15800 * 22 9 8 39 39 H 1.08996 * 109.50992 * 172.87242 * 23 22 9 40 40 H 1.09003 * 109.51274 * 293.02607 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9021 1.0245 0.0000 4 8 2.0173 -0.6953 -1.1560 5 6 2.8503 -1.7943 -0.7517 6 6 2.3869 -2.1491 0.6849 7 6 2.0520 -0.7448 1.2384 8 6 0.9689 -0.8501 2.3002 9 7 1.5568 -1.4410 3.5148 10 6 0.9609 -2.4724 4.1453 11 8 -0.0792 -2.9258 3.7167 12 6 1.5868 -3.0624 5.3826 13 16 0.5564 -4.4204 5.9912 14 6 1.4964 -4.9107 7.3986 15 1 2.4133 -4.3946 7.6421 16 6 1.0590 -5.9610 8.1937 17 7 1.7608 -6.3270 9.2453 18 14 -0.5303 -6.8495 7.7761 19 1 -0.2374 -7.9867 6.8672 20 1 -1.1541 -7.3604 9.0231 21 1 -1.4627 -5.9078 7.1061 22 6 2.8191 -0.8725 4.0143 23 6 3.8193 -0.8113 2.8544 24 8 3.2206 -0.1231 1.7518 25 1 -0.3633 0.4979 0.8990 26 1 -0.3633 0.5297 -0.8807 27 1 -0.3633 -1.0275 -0.0184 28 1 2.7035 -2.6449 -1.4173 29 1 3.8979 -1.4931 -0.7475 30 1 3.1919 -2.6142 1.2540 31 1 1.5023 -2.7856 0.6666 32 1 0.1610 -1.4853 1.9371 33 1 0.5821 0.1437 2.5255 34 1 1.6657 -2.2940 6.1516 35 1 2.5809 -3.4395 5.1424 36 1 1.4550 -7.0607 9.8012 37 1 2.6416 0.1321 4.3980 38 1 3.2152 -1.5036 4.8099 39 1 4.7147 -0.2780 3.1737 40 1 4.0864 -1.8233 2.5502 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366384698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:36 Heat of formation + Delta-G solvation = -135.477888 kcal Electronic energy + Delta-G solvation = -23341.208216 eV Core-core repulsion = 19860.873688 eV Total energy + Delta-G solvation = -3480.334528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24736 -40.43720 -38.67074 -35.95113 -34.68542 -34.30578 -32.29356 -31.22599 -30.38777 -27.93966 -27.35743 -26.21326 -24.62605 -22.79689 -21.48290 -20.27985 -19.65856 -18.64596 -18.20734 -17.46244 -17.15992 -16.99881 -16.72500 -16.39506 -16.28295 -15.77285 -15.44186 -15.19503 -14.94805 -14.87166 -14.63262 -13.98707 -13.82748 -13.69829 -13.44104 -13.35958 -13.03799 -12.98467 -12.69510 -12.62223 -12.51415 -12.31743 -12.01514 -11.89384 -11.61350 -11.18670 -11.15945 -10.97622 -10.63598 -10.54580 -9.70065 -9.02382 -8.52897 -6.24168 0.93028 1.30102 1.42029 1.42951 1.50429 1.89546 2.23356 2.38509 2.64578 2.72220 2.85696 3.25530 3.37107 3.56281 3.73291 3.80968 3.96013 4.05983 4.09796 4.15320 4.16821 4.30127 4.34406 4.38422 4.42203 4.53632 4.60864 4.70389 4.71815 4.77360 4.87028 4.92223 5.00651 5.20101 5.29919 5.69392 5.85889 6.07124 6.09241 6.10502 6.92417 6.96153 8.59388 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.028397 B = 0.003618 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.767331 B = 7736.408748 C = 8089.539265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 H 0.098 0.902 4 O -0.392 6.392 5 C 0.057 3.943 6 C -0.182 4.182 7 C 0.082 3.918 8 C 0.098 3.902 9 N -0.610 5.610 10 C 0.539 3.461 11 O -0.557 6.557 12 C -0.107 4.107 13 S -0.175 6.175 14 C -0.528 4.528 15 H 0.064 0.936 16 C 0.048 3.952 17 N -0.916 5.916 18 Si 0.912 3.088 19 H -0.262 1.262 20 H -0.259 1.259 21 H -0.237 1.237 22 C 0.064 3.936 23 C 0.044 3.956 24 O -0.366 6.366 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.277 0.723 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.141 0.859 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.943 15.041 -17.820 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.116 0.884 4 O -0.312 6.312 5 C -0.019 4.019 6 C -0.219 4.219 7 C 0.041 3.959 8 C -0.025 4.025 9 N -0.345 5.345 10 C 0.326 3.674 11 O -0.435 6.435 12 C -0.257 4.257 13 S 0.052 5.948 14 C -0.676 4.676 15 H 0.082 0.918 16 C -0.157 4.157 17 N -0.554 5.554 18 Si 0.734 3.266 19 H -0.187 1.187 20 H -0.184 1.184 21 H -0.161 1.161 22 C -0.059 4.059 23 C -0.033 4.033 24 O -0.284 6.284 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.125 0.875 39 H 0.159 0.841 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.469 14.494 -18.565 23.682 hybrid contribution 0.844 -0.579 1.319 1.669 sum 3.313 13.915 -17.246 22.406 Atomic orbital electron populations 1.22223 0.92737 1.03064 1.04054 1.22544 0.95132 0.96593 0.81786 0.88402 1.88463 1.67482 1.44964 1.30264 1.23422 0.94785 0.89377 0.94267 1.23767 1.03172 0.97271 0.97726 1.22547 0.86681 0.92944 0.93747 1.22199 0.96159 1.00068 0.84047 1.48144 1.25484 1.33085 1.27781 1.20013 0.84040 0.79119 0.84185 1.90684 1.24474 1.61355 1.66976 1.23270 1.03262 1.01009 0.98205 1.84753 1.35529 1.41269 1.33264 1.22440 1.11274 1.21513 1.12369 0.91758 1.25519 1.00078 0.96456 0.93683 1.70004 1.40235 1.28931 1.16213 0.85908 0.80746 0.80642 0.79342 1.18705 1.18366 1.16123 1.22767 0.83282 1.01450 0.98356 1.23283 0.96088 0.98919 0.84985 1.87828 1.40591 1.50652 1.49342 0.89622 0.90258 0.92521 0.88522 0.91071 0.89051 0.90451 0.88819 0.88887 0.86842 0.86835 0.91341 0.88411 0.87505 0.84102 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 8.38 71.98 0.60 -1.99 16 2 C 0.10 1.77 3.89 30.82 0.12 1.89 16 3 H 0.10 1.66 8.06 -2.39 -0.02 1.64 16 4 O -0.39 -8.36 11.03 -148.98 -1.64 -10.00 16 5 C 0.06 1.04 7.78 72.69 0.57 1.61 16 6 C -0.18 -3.60 6.00 31.85 0.19 -3.41 16 7 C 0.08 1.56 0.79 -10.34 -0.01 1.55 16 8 C 0.10 2.10 4.00 85.91 0.34 2.44 16 9 N -0.61 -14.79 2.93 -819.33 -2.40 -17.19 16 10 C 0.54 18.09 7.73 87.66 0.68 18.77 16 11 O -0.56 -23.08 15.35 -3.03 -0.05 -23.13 16 12 C -0.11 -3.86 4.53 71.23 0.32 -3.54 16 13 S -0.17 -8.62 18.55 -56.49 -1.05 -9.66 16 14 C -0.53 -30.02 10.04 67.96 0.68 -29.34 16 15 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 16 C 0.05 2.78 5.50 84.86 0.47 3.25 16 17 N -0.92 -54.87 13.97 21.65 0.30 -54.56 16 18 Si 0.91 44.26 27.73 68.60 1.90 46.16 16 19 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.24 -11.52 6.74 99.48 0.67 -10.85 16 22 C 0.06 1.08 6.53 86.34 0.56 1.64 16 23 C 0.04 0.63 6.77 72.08 0.49 1.12 16 24 O -0.37 -6.63 10.23 -148.97 -1.52 -8.15 16 25 H 0.09 1.15 6.47 -2.39 -0.02 1.13 16 26 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.06 1.02 7.53 -2.39 -0.02 1.00 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.76 6.02 -2.38 -0.01 1.75 16 31 H 0.08 1.76 7.82 -2.39 -0.02 1.74 16 32 H 0.09 2.35 5.73 -2.39 -0.01 2.34 16 33 H 0.09 1.71 7.12 -2.39 -0.02 1.70 16 34 H 0.11 3.77 8.00 -2.39 -0.02 3.75 16 35 H 0.11 3.72 7.68 -2.39 -0.02 3.70 16 36 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.11 1.73 6.05 -2.39 -0.01 1.72 16 39 H 0.14 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.06 0.91 6.16 -2.39 -0.01 0.90 16 Total: -1.00 -71.71 326.41 1.57 -70.15 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.01 Total: 12.40 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.02 Total: -6.01 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -2.10 Total: -71.75 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -3.21 Total: -41.28 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.05 Total: -9.66 kcal Total: -71.71 1.57 -70.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366384698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.332 kcal (2) G-P(sol) polarization free energy of solvation -71.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds