Wall clock time and date at job start Tue Mar 31 2020 04:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47641 * 333.99753 * 3 2 1 5 5 C 1.36936 * 120.00021 * 270.00620 * 4 3 2 6 6 H 1.08001 * 119.99920 * 189.76642 * 5 4 3 7 7 C 1.38816 * 120.00068 * 9.75597 * 5 4 3 8 8 N 1.31625 * 119.99456 * 27.45570 * 7 5 4 9 9 Si 1.86801 * 120.00269 * 207.44849 * 7 5 4 10 10 H 1.48496 * 109.46674 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46658 * 120.00398 * 9 7 5 12 12 H 1.48495 * 109.46963 * 240.00489 * 9 7 5 13 13 C 1.46496 * 119.99691 * 89.99623 * 4 3 2 14 14 C 1.50704 * 109.47161 * 265.05987 * 13 4 3 15 15 O 1.21273 * 119.99911 * 0.02562 * 14 13 4 16 16 N 1.34777 * 119.99748 * 180.02562 * 14 13 4 17 17 N 1.40095 * 119.99941 * 179.97438 * 16 14 13 18 18 C 1.34774 * 120.00398 * 179.97438 * 17 16 14 19 19 O 1.21557 * 119.99913 * 0.02562 * 18 17 16 20 20 C 1.47841 * 120.00555 * 180.02562 * 18 17 16 21 21 C 1.39578 * 120.14995 * 180.02562 * 20 18 17 22 22 C 1.37950 * 119.85537 * 179.97438 * 21 20 18 23 23 C 1.38357 * 120.14767 * 359.97438 * 22 21 20 24 24 C 1.38363 * 120.29007 * 0.02562 * 23 22 21 25 25 C 1.37956 * 120.14546 * 0.02562 * 24 23 22 26 26 H 4.40646 * 5.51471 * 179.97438 * 4 1 2 27 27 H 1.09007 * 109.47237 * 214.00066 * 3 2 1 28 28 H 1.09003 * 109.47441 * 94.00060 * 3 2 1 29 29 H 0.97003 * 119.99618 * 179.97438 * 8 7 5 30 30 H 1.09008 * 109.46886 * 145.06473 * 13 4 3 31 31 H 1.08992 * 109.47565 * 25.06135 * 13 4 3 32 32 H 0.97005 * 119.99866 * 359.97438 * 16 14 13 33 33 H 0.97005 * 120.00192 * 359.97438 * 17 16 14 34 34 H 1.08004 * 120.06802 * 359.69768 * 21 20 18 35 35 H 1.08006 * 119.92893 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.85439 * 179.97438 * 23 22 21 37 37 H 1.08000 * 119.92391 * 180.02562 * 24 23 22 38 38 H 1.07998 * 120.07276 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2405 0.6055 5 6 3.3631 -1.3007 1.9544 6 1 3.8693 -2.1552 2.3789 7 6 2.9441 -0.2634 2.7762 8 7 1.9120 0.4757 2.4285 9 14 3.8448 0.0833 4.3756 10 1 4.9616 -0.8825 4.5341 11 1 4.3863 1.4657 4.3489 12 1 2.9026 -0.0574 5.5148 13 6 3.3796 -2.4173 -0.2320 14 6 2.1645 -3.3085 -0.2135 15 8 1.1900 -2.9917 0.4351 16 7 2.1608 -4.4577 -0.9177 17 7 1.0315 -5.2865 -0.9000 18 6 1.0276 -6.4354 -1.6046 19 8 2.0042 -6.7528 -2.2550 20 6 -0.1644 -7.3097 -1.5864 21 6 -0.1715 -8.5005 -2.3145 22 6 -1.2869 -9.3121 -2.2928 23 6 -2.3966 -8.9482 -1.5511 24 6 -2.3962 -7.7692 -0.8270 25 6 -1.2877 -6.9480 -0.8410 26 1 -1.0498 -0.0003 0.0004 27 1 3.0089 0.8528 0.5747 28 1 3.0093 0.0725 -1.0252 29 1 1.6189 1.2004 3.0029 30 1 4.2386 -2.9660 0.1544 31 1 3.5815 -2.0996 -1.2549 32 1 2.9402 -4.7109 -1.4367 33 1 0.2522 -5.0335 -0.3806 34 1 0.6926 -8.7837 -2.8972 35 1 -1.2938 -10.2336 -2.8562 36 1 -3.2674 -9.5869 -1.5378 37 1 -3.2655 -7.4911 -0.2497 38 1 -1.2887 -6.0278 -0.2757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491660000.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:19 Heat of formation + Delta-G solvation = 88.117875 kcal Electronic energy + Delta-G solvation = -23286.818376 eV Core-core repulsion = 19713.028487 eV Total energy + Delta-G solvation = -3573.789888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.39366 -39.03694 -38.05829 -35.89621 -34.75517 -32.28423 -31.50554 -31.33035 -31.20062 -30.08278 -27.05616 -25.94978 -24.09759 -22.81188 -22.11274 -21.09644 -20.18069 -18.14241 -17.57295 -17.48929 -16.58971 -16.25939 -15.62776 -15.40825 -15.27235 -14.95851 -14.67654 -14.32096 -13.99911 -13.77126 -13.61654 -13.31189 -13.20516 -12.81831 -12.49150 -11.94792 -11.61620 -11.43047 -11.37274 -11.13961 -10.80686 -10.70237 -10.30366 -10.20249 -10.00539 -9.40854 -9.30000 -9.25901 -8.79298 -8.72353 -8.35200 -7.93692 -7.19992 -5.84603 -3.19785 0.60142 1.08566 2.13051 2.67914 3.35045 3.39517 3.43771 3.45954 3.67958 4.13647 4.25421 4.48774 4.55251 4.60367 4.65204 4.65653 4.90666 5.08421 5.20268 5.26952 5.49382 5.52432 5.63604 5.69679 5.90565 5.99076 6.03394 6.09885 6.15152 6.17150 6.57887 6.60402 7.00876 7.03580 7.17350 7.47319 7.69688 7.92485 8.13975 8.15917 8.94993 9.01538 9.37632 9.65793 10.06875 11.16364 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.003149 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.642230 B = 8888.836457 C = 9006.652625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.095 4.095 3 C 0.265 3.735 4 N -0.549 5.549 5 C -0.268 4.268 6 H 0.080 0.920 7 C 0.010 3.990 8 N -0.870 5.870 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.292 1.292 13 C 0.138 3.862 14 C 0.465 3.535 15 O -0.500 6.500 16 N -0.542 5.542 17 N -0.517 5.517 18 C 0.551 3.449 19 O -0.549 6.549 20 C -0.124 4.124 21 C -0.059 4.059 22 C -0.129 4.129 23 C -0.096 4.096 24 C -0.125 4.125 25 C -0.086 4.086 26 H 0.185 0.815 27 H 0.097 0.903 28 H 0.041 0.959 29 H 0.255 0.745 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.421 0.579 33 H 0.427 0.573 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 -14.463 -9.529 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.098 4.098 3 C 0.141 3.859 4 N -0.266 5.266 5 C -0.397 4.397 6 H 0.098 0.902 7 C -0.191 4.191 8 N -0.511 5.511 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.219 1.219 13 C 0.003 3.997 14 C 0.249 3.751 15 O -0.369 6.369 16 N -0.296 5.296 17 N -0.261 5.261 18 C 0.338 3.662 19 O -0.427 6.427 20 C -0.128 4.128 21 C -0.078 4.078 22 C -0.147 4.147 23 C -0.114 4.114 24 C -0.143 4.143 25 C -0.105 4.105 26 H 0.202 0.798 27 H 0.115 0.885 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.262 0.738 33 H 0.269 0.731 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.789 -14.165 -9.330 17.625 hybrid contribution -0.421 0.007 1.138 1.214 sum -5.211 -14.158 -8.192 17.168 Atomic orbital electron populations 1.23976 0.95167 1.04073 1.07608 1.23842 0.94953 0.96851 0.94115 1.18043 0.83368 0.90132 0.94396 1.44617 1.72281 1.04613 1.05047 1.19249 1.32036 1.05720 0.82651 0.90184 1.24889 0.96308 0.99891 0.98036 1.70274 1.21177 1.21512 1.38133 0.86262 0.79616 0.78036 0.83112 1.20152 1.21357 1.21928 1.21197 0.93082 0.88245 0.97132 1.24658 0.93498 0.78931 0.78032 1.90752 1.35042 1.71158 1.39982 1.46413 1.10079 1.19100 1.54037 1.44939 1.12860 1.18402 1.49934 1.18324 0.87929 0.80183 0.79745 1.90758 1.35226 1.73308 1.43439 1.19781 0.94077 0.96842 1.02142 1.21270 0.98501 0.92001 0.96012 1.21164 0.93301 1.00138 1.00137 1.21399 0.98235 0.96318 0.95480 1.21144 0.98423 0.94807 0.99965 1.21437 0.92633 0.99473 0.96954 0.79814 0.88497 0.94054 0.93486 0.89663 0.90160 0.73842 0.73062 0.84490 0.85234 0.85526 0.85181 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.04 19.25 29.55 0.57 -6.47 16 2 C -0.09 -2.37 10.42 -37.13 -0.39 -2.76 16 3 C 0.27 6.13 5.50 -6.83 -0.04 6.09 16 4 N -0.55 -12.86 2.04 -177.94 -0.36 -13.22 16 5 C -0.27 -7.02 9.55 -15.06 -0.14 -7.16 16 6 H 0.08 2.07 7.96 -52.49 -0.42 1.65 16 7 C 0.01 0.26 4.80 -17.43 -0.08 0.17 16 8 N -0.87 -24.57 9.33 55.49 0.52 -24.05 16 9 Si 0.90 21.12 29.63 -169.99 -5.04 16.09 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 C 0.14 2.54 6.20 -5.19 -0.03 2.51 16 14 C 0.47 9.16 7.99 -10.98 -0.09 9.07 16 15 O -0.50 -12.21 15.21 5.56 0.08 -12.13 16 16 N -0.54 -8.87 6.26 31.22 0.20 -8.67 16 17 N -0.52 -8.03 6.21 30.53 0.19 -7.84 16 18 C 0.55 8.21 7.89 -12.33 -0.10 8.11 16 19 O -0.55 -9.37 16.19 5.32 0.09 -9.28 16 20 C -0.12 -1.52 5.87 -104.97 -0.62 -2.13 16 21 C -0.06 -0.63 9.60 -39.19 -0.38 -1.00 16 22 C -0.13 -1.07 10.03 -39.64 -0.40 -1.47 16 23 C -0.10 -0.75 10.04 -39.49 -0.40 -1.14 16 24 C -0.13 -1.09 10.03 -39.64 -0.40 -1.49 16 25 C -0.09 -0.91 9.54 -39.18 -0.37 -1.29 16 26 H 0.18 3.91 7.80 -54.10 -0.42 3.49 16 27 H 0.10 2.41 6.47 -51.92 -0.34 2.07 16 28 H 0.04 0.80 7.86 -51.93 -0.41 0.39 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.09 1.40 8.08 -51.92 -0.42 0.98 16 31 H 0.08 1.21 7.84 -51.93 -0.41 0.80 16 32 H 0.42 6.03 8.00 -182.60 -1.46 4.57 16 33 H 0.43 6.48 6.04 -182.60 -1.10 5.38 16 34 H 0.14 1.43 7.65 -52.48 -0.40 1.03 16 35 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.13 1.29 6.41 -52.49 -0.34 0.95 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -34.67 339.51 -8.18 -42.85 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.11 Total: 10.10 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -2.86 Total: 1.05 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.54 Total: -53.79 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.17 Total: -21.41 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.04 Total: 16.09 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.67 -8.18 -42.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491660000.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.966 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds