Wall clock time and date at job start Tue Mar 31 2020 04:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47641 * 333.99753 * 3 2 1 5 5 C 1.36936 * 120.00021 * 270.00620 * 4 3 2 6 6 H 1.08001 * 119.99920 * 189.76642 * 5 4 3 7 7 C 1.38816 * 120.00068 * 9.75597 * 5 4 3 8 8 N 1.31625 * 119.99456 * 27.45570 * 7 5 4 9 9 Si 1.86801 * 120.00269 * 207.44849 * 7 5 4 10 10 H 1.48496 * 109.46674 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46658 * 120.00398 * 9 7 5 12 12 H 1.48495 * 109.46963 * 240.00489 * 9 7 5 13 13 C 1.46496 * 119.99691 * 89.99623 * 4 3 2 14 14 C 1.50704 * 109.47161 * 265.05987 * 13 4 3 15 15 O 1.21273 * 119.99911 * 0.02562 * 14 13 4 16 16 N 1.34777 * 119.99748 * 180.02562 * 14 13 4 17 17 N 1.40095 * 119.99941 * 179.97438 * 16 14 13 18 18 C 1.34774 * 120.00398 * 179.97438 * 17 16 14 19 19 O 1.21557 * 119.99913 * 0.02562 * 18 17 16 20 20 C 1.47841 * 120.00555 * 180.02562 * 18 17 16 21 21 C 1.39578 * 120.14995 * 180.02562 * 20 18 17 22 22 C 1.37950 * 119.85537 * 179.97438 * 21 20 18 23 23 C 1.38357 * 120.14767 * 359.97438 * 22 21 20 24 24 C 1.38363 * 120.29007 * 0.02562 * 23 22 21 25 25 C 1.37956 * 120.14546 * 0.02562 * 24 23 22 26 26 H 4.40646 * 5.51471 * 179.97438 * 4 1 2 27 27 H 1.09007 * 109.47237 * 214.00066 * 3 2 1 28 28 H 1.09003 * 109.47441 * 94.00060 * 3 2 1 29 29 H 0.97003 * 119.99618 * 179.97438 * 8 7 5 30 30 H 1.09008 * 109.46886 * 145.06473 * 13 4 3 31 31 H 1.08992 * 109.47565 * 25.06135 * 13 4 3 32 32 H 0.97005 * 119.99866 * 359.97438 * 16 14 13 33 33 H 0.97005 * 120.00192 * 359.97438 * 17 16 14 34 34 H 1.08004 * 120.06802 * 359.69768 * 21 20 18 35 35 H 1.08006 * 119.92893 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.85439 * 179.97438 * 23 22 21 37 37 H 1.08000 * 119.92391 * 180.02562 * 24 23 22 38 38 H 1.07998 * 120.07276 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2405 0.6055 5 6 3.3631 -1.3007 1.9544 6 1 3.8693 -2.1552 2.3789 7 6 2.9441 -0.2634 2.7762 8 7 1.9120 0.4757 2.4285 9 14 3.8448 0.0833 4.3756 10 1 4.9616 -0.8825 4.5341 11 1 4.3863 1.4657 4.3489 12 1 2.9026 -0.0574 5.5148 13 6 3.3796 -2.4173 -0.2320 14 6 2.1645 -3.3085 -0.2135 15 8 1.1900 -2.9917 0.4351 16 7 2.1608 -4.4577 -0.9177 17 7 1.0315 -5.2865 -0.9000 18 6 1.0276 -6.4354 -1.6046 19 8 2.0042 -6.7528 -2.2550 20 6 -0.1644 -7.3097 -1.5864 21 6 -0.1715 -8.5005 -2.3145 22 6 -1.2869 -9.3121 -2.2928 23 6 -2.3966 -8.9482 -1.5511 24 6 -2.3962 -7.7692 -0.8270 25 6 -1.2877 -6.9480 -0.8410 26 1 -1.0498 -0.0003 0.0004 27 1 3.0089 0.8528 0.5747 28 1 3.0093 0.0725 -1.0252 29 1 1.6189 1.2004 3.0029 30 1 4.2386 -2.9660 0.1544 31 1 3.5815 -2.0996 -1.2549 32 1 2.9402 -4.7109 -1.4367 33 1 0.2522 -5.0335 -0.3806 34 1 0.6926 -8.7837 -2.8972 35 1 -1.2938 -10.2336 -2.8562 36 1 -3.2674 -9.5869 -1.5378 37 1 -3.2655 -7.4911 -0.2497 38 1 -1.2887 -6.0278 -0.2757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491660000.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:17 Heat of formation + Delta-G solvation = 65.217866 kcal Electronic energy + Delta-G solvation = -23287.811394 eV Core-core repulsion = 19713.028487 eV Total energy + Delta-G solvation = -3574.782907 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.55358 -40.33100 -39.17586 -37.60415 -36.22441 -33.58707 -33.35362 -32.93877 -31.94059 -31.28857 -28.64535 -27.82950 -25.13289 -23.95064 -23.39960 -22.36117 -21.46726 -19.50045 -19.17195 -18.85005 -18.18374 -17.56040 -16.92344 -16.70693 -16.61566 -16.27698 -15.85831 -15.56385 -15.48390 -15.07653 -14.93959 -14.81973 -14.39511 -14.18468 -13.65082 -13.42164 -13.19698 -12.79288 -12.66570 -12.56925 -12.25034 -12.20243 -12.06979 -11.88595 -11.42413 -11.10671 -10.66980 -10.61691 -10.22623 -10.07338 -9.99735 -9.31082 -9.07468 -7.82884 -5.19153 -0.23335 0.37132 0.85904 1.48779 1.52311 1.57337 1.61575 1.95164 2.38852 2.59004 2.69759 2.84267 2.99422 3.28288 3.54811 3.78167 3.84004 3.96827 4.13170 4.21118 4.27027 4.42334 4.47635 4.58717 4.74653 4.79199 4.89304 5.02273 5.26053 5.32898 5.39286 5.46905 5.62080 5.67941 5.72872 5.77761 5.91306 6.20843 6.60393 6.87108 7.05922 7.49432 7.50078 7.79526 8.16209 9.16882 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.003149 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.642230 B = 8888.836457 C = 9006.652625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.113 4.113 3 C 0.263 3.737 4 N -0.565 5.565 5 C -0.268 4.268 6 H 0.079 0.921 7 C -0.043 4.043 8 N -0.902 5.902 9 Si 0.959 3.041 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.306 1.306 13 C 0.133 3.867 14 C 0.470 3.530 15 O -0.552 6.552 16 N -0.529 5.529 17 N -0.521 5.521 18 C 0.554 3.446 19 O -0.574 6.574 20 C -0.149 4.149 21 C -0.070 4.070 22 C -0.125 4.125 23 C -0.085 4.085 24 C -0.129 4.129 25 C -0.096 4.096 26 H 0.204 0.796 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.245 0.755 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.433 0.567 33 H 0.428 0.572 34 H 0.133 0.867 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 -16.760 -10.548 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.115 4.115 3 C 0.138 3.862 4 N -0.282 5.282 5 C -0.398 4.398 6 H 0.097 0.903 7 C -0.240 4.240 8 N -0.545 5.545 9 Si 0.788 3.212 10 H -0.190 1.190 11 H -0.214 1.214 12 H -0.234 1.234 13 C 0.000 4.000 14 C 0.255 3.745 15 O -0.425 6.425 16 N -0.282 5.282 17 N -0.266 5.266 18 C 0.344 3.656 19 O -0.454 6.454 20 C -0.154 4.154 21 C -0.089 4.089 22 C -0.143 4.143 23 C -0.103 4.103 24 C -0.146 4.146 25 C -0.115 4.115 26 H 0.222 0.778 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.276 0.724 33 H 0.271 0.729 34 H 0.151 0.849 35 H 0.177 0.823 36 H 0.179 0.821 37 H 0.170 0.830 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.127 -16.523 -10.395 20.183 hybrid contribution -0.360 0.478 1.315 1.445 sum -5.487 -16.045 -9.080 19.236 Atomic orbital electron populations 1.24662 0.96234 1.04047 1.07741 1.24499 0.96014 0.96933 0.94101 1.18109 0.82489 0.89568 0.95988 1.44603 1.72629 1.06402 1.04535 1.19488 1.30957 1.05188 0.84122 0.90290 1.25523 0.97147 1.00417 1.00903 1.70425 1.22777 1.22231 1.39117 0.85349 0.78434 0.77868 0.79524 1.18968 1.21376 1.23445 1.21449 0.92676 0.87104 0.98730 1.24408 0.93012 0.79579 0.77466 1.90745 1.36854 1.72552 1.42397 1.45876 1.10792 1.18570 1.53008 1.45012 1.12453 1.18595 1.50533 1.18822 0.88499 0.79737 0.78580 1.90732 1.36421 1.73815 1.44460 1.19678 0.93622 0.97478 1.04585 1.21399 0.99519 0.91952 0.96040 1.21519 0.92364 1.00569 0.99863 1.21851 0.98961 0.95892 0.93598 1.21480 0.98317 0.94810 1.00039 1.21524 0.92999 0.99988 0.96995 0.77848 0.90849 0.90106 0.94536 0.87229 0.86181 0.72396 0.72889 0.84938 0.82283 0.82080 0.82984 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.17 19.25 74.32 1.43 -13.74 16 2 C -0.11 -5.68 10.42 31.12 0.32 -5.36 16 3 C 0.26 12.10 5.50 84.57 0.47 12.56 16 4 N -0.57 -26.03 2.04 -716.89 -1.46 -27.49 16 5 C -0.27 -14.02 9.55 84.03 0.80 -13.21 16 6 H 0.08 4.05 7.96 -2.91 -0.02 4.03 16 7 C -0.04 -2.33 4.80 84.86 0.41 -1.92 16 8 N -0.90 -52.23 9.33 21.65 0.20 -52.03 16 9 Si 0.96 44.24 29.63 68.60 2.03 46.27 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 13 C 0.13 4.65 6.20 85.64 0.53 5.18 16 14 C 0.47 18.15 7.99 87.66 0.70 18.85 16 15 O -0.55 -27.14 15.21 -3.01 -0.05 -27.18 16 16 N -0.53 -16.84 6.26 -173.53 -1.09 -17.93 16 17 N -0.52 -16.11 6.21 -175.61 -1.09 -17.20 16 18 C 0.55 16.43 7.89 86.79 0.68 17.11 16 19 O -0.57 -19.46 16.19 -3.90 -0.06 -19.53 16 20 C -0.15 -3.56 5.87 -20.09 -0.12 -3.68 16 21 C -0.07 -1.40 9.60 22.53 0.22 -1.18 16 22 C -0.13 -1.70 10.03 22.23 0.22 -1.47 16 23 C -0.09 -1.00 10.04 22.33 0.22 -0.78 16 24 C -0.13 -1.91 10.03 22.23 0.22 -1.69 16 25 C -0.10 -1.95 9.54 22.53 0.21 -1.74 16 26 H 0.20 8.71 7.80 -4.42 -0.03 8.67 16 27 H 0.07 3.71 6.47 -2.38 -0.02 3.69 16 28 H 0.08 2.98 7.86 -2.39 -0.02 2.96 16 29 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.11 3.30 8.08 -2.38 -0.02 3.28 16 31 H 0.12 3.23 7.84 -2.39 -0.02 3.21 16 32 H 0.43 11.78 8.00 -213.32 -1.71 10.08 16 33 H 0.43 13.19 6.04 -213.32 -1.29 11.90 16 34 H 0.13 2.68 7.65 -2.91 -0.02 2.66 16 35 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 38 H 0.13 2.52 6.41 -2.91 -0.02 2.50 16 Total: -1.00 -76.58 339.51 2.93 -73.65 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -1.89 Total: 32.51 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.33 Total: 8.93 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -3.44 Total: -114.65 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.11 Total: -46.71 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -76.58 2.93 -73.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491660000.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.864 kcal (2) G-P(sol) polarization free energy of solvation -76.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds