Wall clock time and date at job start Tue Mar 31 2020 04:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00222 * 2 1 4 4 H 1.48494 * 109.47391 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47076 * 300.00652 * 3 2 1 6 6 H 1.48503 * 109.46756 * 60.00053 * 3 2 1 7 7 C 1.37879 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00159 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99442 * 359.97438 * 7 2 1 10 10 O 1.42897 * 113.41824 * 46.80377 * 9 7 2 11 11 C 1.53503 * 114.20491 * 180.02562 * 9 7 2 12 12 N 1.47066 * 87.98596 * 139.65156 * 11 9 7 13 13 C 1.34772 * 136.05397 * 152.84244 * 12 11 9 14 14 O 1.21286 * 120.00434 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00116 * 179.97438 * 13 12 11 16 16 C 1.50700 * 109.47363 * 180.02562 * 15 13 12 17 17 C 1.39680 * 119.09196 * 90.00057 * 16 15 13 18 18 C 1.35665 * 121.72457 * 179.97438 * 17 16 15 19 19 C 1.41124 * 119.53759 * 0.02562 * 18 17 16 20 20 C 1.38245 * 134.82193 * 179.97438 * 19 18 17 21 21 N 1.33989 * 107.90877 * 179.97438 * 20 19 18 22 22 H 0.97000 * 125.02441 * 180.02562 * 21 20 19 23 23 N 1.39962 * 109.95318 * 359.97438 * 21 20 19 24 24 C 1.32055 * 108.96479 * 0.02562 * 23 21 20 25 25 C 1.35634 * 119.09145 * 269.73078 * 16 15 13 26 26 C 1.47060 * 87.88602 * 332.87796 * 12 11 9 27 27 H 0.97003 * 119.99434 * 359.97438 * 1 2 3 28 28 H 0.96701 * 113.99865 * 313.19612 * 10 9 7 29 29 H 1.09000 * 113.46355 * 24.87108 * 11 9 7 30 30 H 1.09003 * 113.46309 * 254.43554 * 11 9 7 31 31 H 1.09004 * 109.46813 * 300.00157 * 15 13 12 32 32 H 1.08998 * 109.47087 * 60.00096 * 15 13 12 33 33 H 1.07996 * 119.13983 * 0.02562 * 17 16 15 34 34 H 1.07999 * 120.22984 * 180.02562 * 18 17 16 35 35 H 1.07995 * 126.04417 * 359.97438 * 20 19 18 36 36 H 1.08005 * 120.20466 * 0.02562 * 25 16 15 37 37 H 1.09007 * 113.46761 * 141.90148 * 26 12 11 38 38 H 1.09003 * 113.46830 * 272.34116 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.1894 -2.5419 -0.9561 11 6 2.1487 -3.7442 -0.0005 12 7 1.2099 -4.3574 0.9510 13 6 0.8346 -5.6113 1.2725 14 8 1.3287 -6.5583 0.6981 15 6 -0.1983 -5.8367 2.3465 16 6 -0.4368 -7.3155 2.5116 17 6 0.3399 -8.0308 3.4261 18 6 0.1701 -9.3630 3.6178 19 6 -0.8141 -10.0526 2.8780 20 6 -1.2469 -11.3641 2.8174 21 7 -2.2333 -11.4312 1.9130 22 1 -2.7157 -12.2381 1.6742 23 7 -2.4653 -10.1645 1.3646 24 6 -1.6333 -9.2995 1.9153 25 6 -1.4035 -7.9142 1.7721 26 6 0.8603 -3.0003 1.3968 27 1 -0.4849 0.8401 0.0004 28 1 -0.3743 -1.7562 -0.9531 29 1 3.1384 -3.5658 0.4200 30 1 2.1849 -4.2532 -0.9638 31 1 0.1594 -5.4194 3.2878 32 1 -1.1301 -5.3475 2.0628 33 1 1.0947 -7.5094 3.9960 34 1 0.7840 -9.8922 4.3317 35 1 -0.8587 -12.1888 3.3966 36 1 -1.9915 -7.3352 1.0754 37 1 -0.1991 -2.8767 1.6217 38 1 1.5068 -2.6237 2.1895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527003766.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:01 Heat of formation + Delta-G solvation = 25.932310 kcal Electronic energy + Delta-G solvation = -23340.346829 eV Core-core repulsion = 19763.860372 eV Total energy + Delta-G solvation = -3576.486457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.19169 -41.26659 -39.47390 -38.02640 -35.85209 -34.10449 -33.47462 -32.95367 -30.79859 -29.75021 -28.81369 -26.94375 -26.72998 -24.40596 -22.63092 -21.73928 -21.58869 -19.90073 -19.23587 -18.96402 -17.91513 -17.66882 -17.22499 -16.76871 -16.55145 -16.14920 -15.86697 -15.77992 -15.45772 -14.93352 -14.81240 -14.47896 -14.07268 -13.79641 -13.73279 -13.39055 -12.99534 -12.83671 -12.77591 -12.68451 -12.60409 -12.45018 -12.21223 -12.11299 -11.36720 -11.29399 -11.25484 -10.92472 -10.63045 -10.20662 -9.61023 -9.53178 -8.58392 -8.25319 -6.42136 -0.30906 0.81364 1.47563 1.48653 1.52420 1.62588 1.68028 1.89009 2.04069 2.42758 2.87265 2.97396 3.29678 3.61886 3.67504 3.84335 3.93528 4.12187 4.19848 4.31967 4.36470 4.50573 4.55460 4.61673 4.64721 4.67495 4.77113 4.84839 4.97050 4.98182 5.20682 5.27650 5.44915 5.55516 5.72121 5.75420 5.93539 5.96936 6.32044 6.61104 6.64097 6.92799 7.19255 7.32064 7.51496 8.80959 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.039769 B = 0.002792 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.891078 B =10024.855633 C =10230.322294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.031 3.969 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.216 3.784 10 O -0.588 6.588 11 C 0.106 3.894 12 N -0.638 5.638 13 C 0.534 3.466 14 O -0.591 6.591 15 C -0.091 4.091 16 C -0.014 4.014 17 C -0.166 4.166 18 C -0.028 4.028 19 C -0.242 4.242 20 C 0.121 3.879 21 N -0.416 5.416 22 H 0.460 0.540 23 N -0.362 5.362 24 C 0.084 3.916 25 C -0.133 4.133 26 C 0.087 3.913 27 H 0.276 0.724 28 H 0.389 0.611 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.165 0.835 35 H 0.248 0.752 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.828 -17.506 12.119 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.169 4.169 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.587 4.587 8 H 0.093 0.907 9 C 0.174 3.826 10 O -0.401 6.401 11 C -0.017 4.017 12 N -0.372 5.372 13 C 0.325 3.675 14 O -0.473 6.473 15 C -0.130 4.130 16 C -0.019 4.019 17 C -0.186 4.186 18 C -0.048 4.048 19 C -0.251 4.251 20 C -0.038 4.038 21 N -0.117 5.117 22 H 0.308 0.692 23 N -0.192 5.192 24 C -0.068 4.068 25 C -0.155 4.155 26 C -0.036 4.036 27 H 0.086 0.914 28 H 0.245 0.755 29 H 0.122 0.878 30 H 0.065 0.935 31 H 0.149 0.851 32 H 0.125 0.875 33 H 0.156 0.844 34 H 0.182 0.818 35 H 0.264 0.736 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.554 -18.829 10.848 21.880 hybrid contribution 0.218 1.362 -0.054 1.381 sum -2.336 -17.466 10.794 20.665 Atomic orbital electron populations 1.69335 1.07179 1.28865 1.50484 1.25780 0.95769 1.02711 0.92681 0.85297 0.78961 0.78462 0.77625 1.19052 1.21010 1.20092 1.21682 0.94180 0.90459 1.52411 0.90716 1.19860 0.85479 0.91686 0.85539 1.86040 1.45567 1.48140 1.60362 1.23323 0.94772 0.91468 0.92119 1.49777 1.42328 1.05159 1.39897 1.20616 0.83088 0.80028 0.83773 1.90642 1.59042 1.41521 1.56104 1.20685 0.98841 0.94474 0.99014 1.18949 0.93809 0.94075 0.95038 1.20623 1.01577 0.95414 1.00941 1.20584 0.94359 0.93209 0.96606 1.20136 1.05154 0.94014 1.05844 1.23560 0.89540 0.98079 0.92597 1.46370 1.27051 1.09770 1.28513 0.69239 1.77602 1.26565 0.89859 1.25129 1.21021 0.94946 0.94778 0.96087 1.19684 1.02097 0.91036 1.02636 1.24019 1.00788 0.77460 1.01326 0.91385 0.75505 0.87766 0.93451 0.85090 0.87502 0.84445 0.81779 0.73615 0.87356 0.91643 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.98 11.01 21.45 0.24 -45.74 16 2 C 0.03 1.50 5.40 84.65 0.46 1.96 16 3 Si 0.97 38.90 29.54 68.60 2.03 40.92 16 4 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.55 -27.08 8.69 25.60 0.22 -26.86 16 8 H 0.07 3.57 7.81 -2.92 -0.02 3.54 16 9 C 0.22 10.37 1.58 -11.20 -0.02 10.35 16 10 O -0.59 -31.24 13.54 -148.98 -2.02 -33.26 16 11 C 0.11 4.71 8.03 83.18 0.67 5.37 16 12 N -0.64 -26.93 3.69 -858.75 -3.17 -30.09 16 13 C 0.53 21.87 8.07 87.66 0.71 22.58 16 14 O -0.59 -28.44 16.81 -3.05 -0.05 -28.49 16 15 C -0.09 -2.83 5.60 29.10 0.16 -2.66 16 16 C -0.01 -0.44 4.33 -20.12 -0.09 -0.52 16 17 C -0.17 -4.30 9.51 22.02 0.21 -4.09 16 18 C -0.03 -0.59 10.09 22.38 0.23 -0.36 16 19 C -0.24 -5.64 6.33 -20.23 -0.13 -5.77 16 20 C 0.12 1.62 12.08 84.37 1.02 2.64 16 21 N -0.42 -6.93 7.18 -56.35 -0.40 -7.34 16 22 H 0.46 3.53 8.96 -213.41 -1.91 1.62 16 23 N -0.36 -10.69 12.70 -48.70 -0.62 -11.31 16 24 C 0.08 2.66 7.49 42.16 0.32 2.98 16 25 C -0.13 -4.57 9.65 22.38 0.22 -4.35 16 26 C 0.09 3.60 7.83 83.18 0.65 4.25 16 27 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 28 H 0.39 20.84 6.33 -74.06 -0.47 20.37 16 29 H 0.10 4.14 8.10 -2.39 -0.02 4.12 16 30 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.13 3.23 8.07 -2.38 -0.02 3.21 16 32 H 0.11 3.20 8.06 -2.39 -0.02 3.18 16 33 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.25 0.10 8.06 -2.91 -0.02 0.07 16 36 H 0.11 3.86 8.06 -2.91 -0.02 3.83 16 37 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 38 H 0.10 3.74 8.10 -2.39 -0.02 3.73 16 Total: -1.00 -73.89 332.74 -0.64 -74.52 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: -1.26 Total: 35.27 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 4.62 Total: 5.51 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -3.96 Total: -94.48 kcal Atomic # 8 Polarization: -59.67 SS G_CDS: -2.07 Total: -61.74 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.92 kcal Total: -73.89 -0.64 -74.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527003766.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.457 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds